Wall clock time and date at job start Tue Mar 31 2020 22:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00131 * 2 1 4 4 H 1.48500 * 109.46824 * 269.99893 * 3 2 1 5 5 H 1.48502 * 109.46883 * 29.99654 * 3 2 1 6 6 H 1.48498 * 109.47117 * 149.99747 * 3 2 1 7 7 C 1.38817 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.36928 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99801 * 186.07861 * 9 7 2 11 11 C 1.53005 * 110.54293 * 58.16143 * 10 9 7 12 12 N 1.46500 * 109.46726 * 57.86435 * 11 10 9 13 13 C 1.34774 * 119.99779 * 175.18506 * 12 11 10 14 14 O 1.21276 * 120.00260 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00188 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47416 * 183.74380 * 15 13 12 17 17 C 1.52999 * 115.54848 * 272.88231 * 16 15 13 18 18 F 1.39902 * 109.47201 * 64.79932 * 17 16 15 19 19 F 1.39899 * 109.47028 * 184.79659 * 17 16 15 20 20 F 1.39901 * 109.47451 * 304.79744 * 17 16 15 21 21 C 1.52995 * 117.49717 * 127.17598 * 16 15 13 22 22 C 1.52998 * 117.49815 * 58.55314 * 16 15 13 23 23 C 1.54897 * 110.48706 * 295.54927 * 10 9 7 24 24 C 1.54889 * 102.74807 * 279.26688 * 23 10 9 25 25 C 1.54268 * 104.19621 * 322.05840 * 24 23 10 26 26 C 1.53873 * 106.59928 * 23.60596 * 25 24 23 27 27 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 28 28 H 0.97006 * 120.00387 * 6.06828 * 9 7 2 29 29 H 1.08998 * 109.46659 * 177.85975 * 11 10 9 30 30 H 1.08994 * 109.47292 * 297.86357 * 11 10 9 31 31 H 0.97003 * 120.00298 * 355.17830 * 12 11 10 32 32 H 1.08994 * 109.47167 * 303.75108 * 15 13 12 33 33 H 1.09001 * 109.46918 * 63.74540 * 15 13 12 34 34 H 1.08993 * 117.50176 * 0.02562 * 21 16 15 35 35 H 1.09008 * 117.49892 * 145.02182 * 21 16 15 36 36 H 1.08997 * 117.49910 * 214.97870 * 22 16 15 37 37 H 1.08998 * 117.49642 * 359.97438 * 22 16 15 38 38 H 1.09004 * 110.74978 * 37.57944 * 23 10 9 39 39 H 1.08996 * 110.75927 * 160.95069 * 23 10 9 40 40 H 1.08996 * 110.48396 * 203.37300 * 24 23 10 41 41 H 1.09001 * 110.48697 * 80.73372 * 24 23 10 42 42 H 1.09010 * 110.02684 * 264.32562 * 25 24 23 43 43 H 1.08996 * 110.03512 * 142.89863 * 25 24 23 44 44 H 1.08997 * 110.03430 * 240.71453 * 26 25 24 45 45 H 1.09003 * 110.03030 * 119.29180 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0518 -3.6531 0.1355 11 6 2.8586 -3.6731 1.4354 12 7 1.9573 -3.4709 2.5725 13 6 2.4329 -3.5476 3.8312 14 8 3.6069 -3.7844 4.0225 15 6 1.5060 -3.3390 5.0010 16 6 2.3089 -3.3858 6.3026 17 6 2.5065 -4.7776 6.9064 18 9 3.2825 -5.5557 6.0405 19 9 3.1569 -4.6629 8.1396 20 9 1.2608 -5.3871 7.0910 21 6 2.1546 -2.2108 7.2703 22 6 3.4465 -2.3761 6.4675 23 6 2.9815 -3.8771 -1.0830 24 6 2.0100 -4.4241 -2.1582 25 6 1.0468 -5.3351 -1.3695 26 6 1.0734 -4.8450 0.0889 27 1 -0.4850 0.8400 -0.0004 28 1 0.3596 -2.3904 -0.0886 29 1 3.3608 -4.6352 1.5364 30 1 3.6014 -2.8758 1.4142 31 1 1.0183 -3.2817 2.4195 32 1 1.0182 -2.3686 4.9096 33 1 0.7513 -4.1255 5.0112 34 1 1.4809 -1.4047 6.9799 35 1 2.1938 -2.4292 8.3375 36 1 4.3356 -2.7033 7.0064 37 1 3.6233 -1.6789 5.6485 38 1 3.4266 -2.9364 -1.4073 39 1 3.7531 -4.6110 -0.8505 40 1 2.5542 -5.0009 -2.9060 41 1 1.4629 -3.6073 -2.6290 42 1 1.3849 -6.3701 -1.4218 43 1 0.0380 -5.2506 -1.7735 44 1 1.4243 -5.6420 0.7443 45 1 0.0775 -4.5226 0.3926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715305588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:28 Heat of formation + Delta-G solvation = -165.502993 kcal Electronic energy + Delta-G solvation = -30536.903818 eV Core-core repulsion = 25946.842506 eV Total energy + Delta-G solvation = -4590.061312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 13.23 seconds Orbital eigenvalues (eV) -50.05290 -47.64061 -47.43698 -39.71487 -38.44250 -37.17797 -34.03575 -33.28398 -30.82375 -29.78308 -28.24621 -27.77457 -26.55446 -24.30439 -23.32849 -22.72533 -21.03546 -20.20589 -19.59122 -18.71589 -18.34940 -18.23909 -17.49499 -17.03443 -16.56712 -15.75362 -15.27368 -15.01525 -14.68467 -14.61429 -14.39975 -14.15650 -14.08315 -13.99727 -13.68792 -13.66098 -13.58487 -13.44113 -13.30805 -12.97212 -12.62093 -12.27647 -11.77642 -11.72517 -11.48668 -11.38857 -11.09772 -10.85752 -10.77398 -10.75732 -10.66037 -10.54531 -10.52696 -10.32243 -10.01415 -9.85560 -9.69123 -9.39825 -8.94022 -8.41282 -7.05977 -5.85589 -3.14625 2.70058 3.04993 3.10994 3.37322 3.44450 3.45047 3.71924 3.77774 3.95207 4.35350 4.37720 4.51906 4.76090 4.76996 5.10373 5.12736 5.21737 5.26919 5.40432 5.41258 5.45136 5.53019 5.62431 5.64864 5.77412 5.79435 5.92617 5.94174 5.97422 6.13582 6.22512 6.26227 6.35030 6.45236 6.54314 6.63600 6.77932 6.80269 6.98312 7.08154 7.66225 8.05820 8.33074 8.69761 9.45041 9.99110 10.35030 11.36358 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003884 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.166960 B = 7207.660504 C = 8787.693880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.900 3.100 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.232 4.232 8 H 0.069 0.931 9 N -0.708 5.708 10 C 0.188 3.812 11 C 0.123 3.877 12 N -0.701 5.701 13 C 0.505 3.495 14 O -0.541 6.541 15 C -0.104 4.104 16 C -0.184 4.184 17 C 0.490 3.510 18 F -0.166 7.166 19 F -0.186 7.186 20 F -0.184 7.184 21 C -0.151 4.151 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.123 4.123 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.403 0.597 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 -9.224 10.285 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.731 3.269 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.349 5.349 10 C 0.096 3.904 11 C -0.003 4.003 12 N -0.350 5.350 13 C 0.290 3.710 14 O -0.419 6.419 15 C -0.144 4.144 16 C -0.186 4.186 17 C 0.436 3.564 18 F -0.147 7.147 19 F -0.167 7.167 20 F -0.166 7.166 21 C -0.188 4.188 22 C -0.156 4.156 23 C -0.171 4.171 24 C -0.151 4.151 25 C -0.156 4.156 26 C -0.161 4.161 27 H 0.064 0.936 28 H 0.219 0.781 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.239 0.761 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.231 -9.282 10.435 14.143 hybrid contribution -0.351 0.832 -0.119 0.910 sum 1.880 -8.451 10.317 13.468 Atomic orbital electron populations 1.69647 1.04993 1.25617 1.57701 1.24675 0.95387 0.97442 1.02911 0.86297 0.78799 0.84200 0.77556 1.21790 1.21885 1.20816 1.19086 0.90981 0.83796 1.42407 0.91298 1.42404 1.06144 0.99403 1.86974 1.20638 0.91373 0.87153 0.91251 1.21779 0.92836 0.99903 0.85807 1.45732 1.13670 1.70725 1.04918 1.20265 0.88864 0.77663 0.84237 1.90687 1.17011 1.48785 1.85440 1.21153 0.97676 1.05930 0.89682 1.21998 1.09046 0.87936 0.99634 1.19404 0.73674 0.87670 0.75700 1.93259 1.75190 1.76917 1.69355 1.93136 1.81978 1.96271 1.45314 1.93159 1.42782 1.85332 1.95302 1.23335 1.01455 0.96714 0.97312 1.22997 0.91941 0.98483 1.02168 1.22887 0.97265 1.00518 0.96466 1.22197 0.97105 0.98534 0.97256 1.22057 0.99522 0.98485 0.95575 1.22377 0.99852 0.97417 0.96503 0.93575 0.78088 0.92780 0.91791 0.76148 0.87009 0.88007 0.86825 0.87511 0.87686 0.86838 0.90799 0.92854 0.93070 0.91216 0.92803 0.92440 0.91996 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.84 13.07 55.49 0.73 -25.12 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.41 29.55 -169.99 -5.02 16.38 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -5.75 8.59 -15.06 -0.13 -5.87 16 8 H 0.07 1.73 7.13 -52.48 -0.37 1.36 16 9 N -0.71 -15.22 4.71 -45.69 -0.22 -15.44 16 10 C 0.19 3.30 0.52 -130.15 -0.07 3.23 16 11 C 0.12 2.18 4.29 -4.04 -0.02 2.17 16 12 N -0.70 -11.60 5.24 -60.30 -0.32 -11.92 16 13 C 0.50 8.19 7.53 -10.99 -0.08 8.10 16 14 O -0.54 -10.26 13.94 5.56 0.08 -10.19 16 15 C -0.10 -1.31 5.68 -27.88 -0.16 -1.46 16 16 C -0.18 -2.25 1.35 -154.51 -0.21 -2.45 16 17 C 0.49 6.45 3.06 37.16 0.11 6.56 16 18 F -0.17 -2.59 15.97 2.25 0.04 -2.56 16 19 F -0.19 -2.33 15.90 2.25 0.04 -2.30 16 20 F -0.18 -2.35 16.77 2.25 0.04 -2.32 16 21 C -0.15 -1.45 9.60 -26.73 -0.26 -1.70 16 22 C -0.12 -1.40 8.43 -26.73 -0.23 -1.63 16 23 C -0.13 -2.20 5.90 -24.73 -0.15 -2.35 16 24 C -0.11 -1.74 6.79 -25.07 -0.17 -1.91 16 25 C -0.12 -1.67 6.80 -25.61 -0.17 -1.84 16 26 C -0.12 -1.85 5.69 -25.61 -0.15 -2.00 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.38 8.94 7.49 -40.82 -0.31 8.63 16 29 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.06 1.30 7.47 -51.93 -0.39 0.91 16 31 H 0.40 6.50 8.07 -40.82 -0.33 6.17 16 32 H 0.11 1.25 7.89 -51.93 -0.41 0.84 16 33 H 0.10 1.13 7.60 -51.93 -0.39 0.73 16 34 H 0.11 0.94 8.04 -51.93 -0.42 0.53 16 35 H 0.11 0.90 7.64 -51.92 -0.40 0.51 16 36 H 0.10 1.20 7.92 -51.93 -0.41 0.79 16 37 H 0.11 1.46 8.09 -51.93 -0.42 1.04 16 38 H 0.07 1.40 7.24 -51.93 -0.38 1.02 16 39 H 0.05 0.81 8.06 -51.93 -0.42 0.39 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.87 7.80 -51.93 -0.41 0.46 16 45 H 0.06 0.98 7.76 -51.93 -0.40 0.58 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -28.54 373.36 -7.48 -36.01 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -6.70 Total: 13.28 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.76 Total: -1.48 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.19 Total: -52.48 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.11 Total: -7.17 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.54 -7.48 -36.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715305588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.488 kcal (2) G-P(sol) polarization free energy of solvation -28.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.23 seconds