Wall clock time and date at job start Tue Mar 31 2020 22:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00131 * 2 1 4 4 H 1.48500 * 109.46824 * 269.99893 * 3 2 1 5 5 H 1.48502 * 109.46883 * 29.99654 * 3 2 1 6 6 H 1.48498 * 109.47117 * 149.99747 * 3 2 1 7 7 C 1.38817 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.36928 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99801 * 186.07861 * 9 7 2 11 11 C 1.53005 * 110.54293 * 58.16143 * 10 9 7 12 12 N 1.46500 * 109.46726 * 57.86435 * 11 10 9 13 13 C 1.34774 * 119.99779 * 175.18506 * 12 11 10 14 14 O 1.21276 * 120.00260 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00188 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47416 * 183.74380 * 15 13 12 17 17 C 1.52999 * 115.54848 * 272.88231 * 16 15 13 18 18 F 1.39902 * 109.47201 * 64.79932 * 17 16 15 19 19 F 1.39899 * 109.47028 * 184.79659 * 17 16 15 20 20 F 1.39901 * 109.47451 * 304.79744 * 17 16 15 21 21 C 1.52995 * 117.49717 * 127.17598 * 16 15 13 22 22 C 1.52998 * 117.49815 * 58.55314 * 16 15 13 23 23 C 1.54897 * 110.48706 * 295.54927 * 10 9 7 24 24 C 1.54889 * 102.74807 * 279.26688 * 23 10 9 25 25 C 1.54268 * 104.19621 * 322.05840 * 24 23 10 26 26 C 1.53873 * 106.59928 * 23.60596 * 25 24 23 27 27 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 28 28 H 0.97006 * 120.00387 * 6.06828 * 9 7 2 29 29 H 1.08998 * 109.46659 * 177.85975 * 11 10 9 30 30 H 1.08994 * 109.47292 * 297.86357 * 11 10 9 31 31 H 0.97003 * 120.00298 * 355.17830 * 12 11 10 32 32 H 1.08994 * 109.47167 * 303.75108 * 15 13 12 33 33 H 1.09001 * 109.46918 * 63.74540 * 15 13 12 34 34 H 1.08993 * 117.50176 * 0.02562 * 21 16 15 35 35 H 1.09008 * 117.49892 * 145.02182 * 21 16 15 36 36 H 1.08997 * 117.49910 * 214.97870 * 22 16 15 37 37 H 1.08998 * 117.49642 * 359.97438 * 22 16 15 38 38 H 1.09004 * 110.74978 * 37.57944 * 23 10 9 39 39 H 1.08996 * 110.75927 * 160.95069 * 23 10 9 40 40 H 1.08996 * 110.48396 * 203.37300 * 24 23 10 41 41 H 1.09001 * 110.48697 * 80.73372 * 24 23 10 42 42 H 1.09010 * 110.02684 * 264.32562 * 25 24 23 43 43 H 1.08996 * 110.03512 * 142.89863 * 25 24 23 44 44 H 1.08997 * 110.03430 * 240.71453 * 26 25 24 45 45 H 1.09003 * 110.03030 * 119.29180 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0518 -3.6531 0.1355 11 6 2.8586 -3.6731 1.4354 12 7 1.9573 -3.4709 2.5725 13 6 2.4329 -3.5476 3.8312 14 8 3.6069 -3.7844 4.0225 15 6 1.5060 -3.3390 5.0010 16 6 2.3089 -3.3858 6.3026 17 6 2.5065 -4.7776 6.9064 18 9 3.2825 -5.5557 6.0405 19 9 3.1569 -4.6629 8.1396 20 9 1.2608 -5.3871 7.0910 21 6 2.1546 -2.2108 7.2703 22 6 3.4465 -2.3761 6.4675 23 6 2.9815 -3.8771 -1.0830 24 6 2.0100 -4.4241 -2.1582 25 6 1.0468 -5.3351 -1.3695 26 6 1.0734 -4.8450 0.0889 27 1 -0.4850 0.8400 -0.0004 28 1 0.3596 -2.3904 -0.0886 29 1 3.3608 -4.6352 1.5364 30 1 3.6014 -2.8758 1.4142 31 1 1.0183 -3.2817 2.4195 32 1 1.0182 -2.3686 4.9096 33 1 0.7513 -4.1255 5.0112 34 1 1.4809 -1.4047 6.9799 35 1 2.1938 -2.4292 8.3375 36 1 4.3356 -2.7033 7.0064 37 1 3.6233 -1.6789 5.6485 38 1 3.4266 -2.9364 -1.4073 39 1 3.7531 -4.6110 -0.8505 40 1 2.5542 -5.0009 -2.9060 41 1 1.4629 -3.6073 -2.6290 42 1 1.3849 -6.3701 -1.4218 43 1 0.0380 -5.2506 -1.7735 44 1 1.4243 -5.6420 0.7443 45 1 0.0775 -4.5226 0.3926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715305588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:14 Heat of formation + Delta-G solvation = -181.657620 kcal Electronic energy + Delta-G solvation = -30537.604335 eV Core-core repulsion = 25946.842506 eV Total energy + Delta-G solvation = -4590.761829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 11.61 seconds Orbital eigenvalues (eV) -51.08632 -48.64357 -48.52752 -40.98313 -39.74533 -38.25505 -35.47184 -35.02086 -32.41890 -31.04818 -29.52836 -29.19070 -27.61352 -25.96017 -24.88381 -23.57535 -22.16523 -21.41567 -20.85318 -20.14020 -19.39734 -19.28700 -18.92061 -18.48396 -17.83600 -17.18138 -16.55371 -16.25815 -16.05843 -15.79041 -15.71505 -15.43799 -15.16926 -15.15241 -15.02924 -14.80811 -14.73847 -14.69105 -14.57392 -14.26611 -14.00702 -13.57881 -13.14787 -12.98958 -12.88717 -12.63728 -12.47233 -12.35601 -12.30500 -12.24655 -11.93994 -11.73085 -11.70382 -11.56920 -11.44291 -11.37899 -11.17567 -10.91025 -10.63345 -9.82501 -8.92446 -7.88156 -5.13505 1.45802 1.49062 1.54304 1.69205 1.79400 2.12418 2.55678 2.61267 2.78295 2.95520 3.39405 3.43434 3.45147 3.75698 3.79502 3.80934 3.85917 3.96324 4.13732 4.19651 4.44350 4.50073 4.51058 4.63603 4.64983 4.67669 4.70068 4.83694 4.89128 4.91318 5.01519 5.06955 5.09073 5.15489 5.22181 5.24286 5.41507 5.49772 5.62125 5.64884 5.72863 6.35182 6.74026 7.39615 7.43260 8.16141 8.41843 9.34112 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003884 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.166960 B = 7207.660504 C = 8787.693880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.061 4.061 3 Si 0.948 3.052 4 H -0.294 1.294 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.212 4.212 8 H 0.062 0.938 9 N -0.709 5.709 10 C 0.184 3.816 11 C 0.131 3.869 12 N -0.701 5.701 13 C 0.500 3.500 14 O -0.571 6.571 15 C -0.098 4.098 16 C -0.200 4.200 17 C 0.488 3.512 18 F -0.184 7.184 19 F -0.183 7.183 20 F -0.181 7.181 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.131 4.131 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.116 4.116 27 H 0.248 0.752 28 H 0.376 0.624 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.407 0.593 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 -10.319 11.082 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.253 4.253 3 Si 0.780 3.220 4 H -0.222 1.222 5 H -0.224 1.224 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.080 0.920 9 N -0.349 5.349 10 C 0.093 3.907 11 C 0.005 3.995 12 N -0.351 5.351 13 C 0.287 3.713 14 O -0.451 6.451 15 C -0.138 4.138 16 C -0.201 4.201 17 C 0.434 3.566 18 F -0.166 7.166 19 F -0.164 7.164 20 F -0.163 7.163 21 C -0.156 4.156 22 C -0.170 4.170 23 C -0.171 4.171 24 C -0.148 4.148 25 C -0.151 4.151 26 C -0.154 4.154 27 H 0.057 0.943 28 H 0.210 0.790 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.242 0.758 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.799 -10.406 11.237 15.420 hybrid contribution -0.116 1.086 -0.362 1.151 sum 1.683 -9.320 10.874 14.420 Atomic orbital electron populations 1.69750 1.05831 1.25447 1.60025 1.25168 0.95990 0.99639 1.04547 0.85519 0.77779 0.81690 0.77020 1.22215 1.22391 1.20677 1.19212 0.90728 0.84978 1.39535 0.92018 1.42433 1.05736 0.99989 1.86743 1.20851 0.92053 0.86517 0.91304 1.21591 0.92458 0.99026 0.86432 1.45756 1.13561 1.70839 1.04966 1.20943 0.89038 0.76530 0.84823 1.90672 1.18570 1.50007 1.85868 1.21168 0.97128 1.07414 0.88041 1.22057 1.09722 0.87941 1.00414 1.19553 0.73499 0.87896 0.75609 1.93222 1.75781 1.77544 1.70040 1.93137 1.81971 1.96249 1.45048 1.93161 1.42464 1.85382 1.95275 1.23483 0.99425 0.95164 0.97560 1.22954 0.92898 0.98499 1.02642 1.22865 0.97874 0.99900 0.96479 1.22158 0.96989 0.98271 0.97372 1.22050 0.99451 0.99390 0.94223 1.22324 0.98892 0.96407 0.97804 0.94320 0.79019 0.91958 0.95042 0.75785 0.85372 0.86262 0.85011 0.85904 0.87774 0.88380 0.93571 0.90803 0.90785 0.93826 0.90257 0.92050 0.90389 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.80 13.07 21.65 0.28 -53.52 16 2 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 3 Si 0.95 44.56 29.55 68.60 2.03 46.59 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 7 C -0.21 -10.64 8.59 84.04 0.72 -9.91 16 8 H 0.06 3.16 7.13 -2.91 -0.02 3.14 16 9 N -0.71 -30.54 4.71 -298.48 -1.41 -31.94 16 10 C 0.18 6.29 0.52 4.68 0.00 6.30 16 11 C 0.13 4.63 4.29 86.38 0.37 5.00 16 12 N -0.70 -22.78 5.24 -463.07 -2.43 -25.21 16 13 C 0.50 15.87 7.53 87.66 0.66 16.53 16 14 O -0.57 -21.66 13.94 -3.02 -0.04 -21.70 16 15 C -0.10 -2.28 5.68 29.85 0.17 -2.11 16 16 C -0.20 -4.53 1.35 -52.18 -0.07 -4.60 16 17 C 0.49 12.18 3.06 71.98 0.22 12.40 16 18 F -0.18 -5.66 15.97 44.97 0.72 -4.94 16 19 F -0.18 -4.32 15.90 44.97 0.71 -3.61 16 20 F -0.18 -4.29 16.77 44.97 0.75 -3.54 16 21 C -0.12 -1.97 9.60 30.59 0.29 -1.68 16 22 C -0.13 -3.01 8.43 30.59 0.26 -2.75 16 23 C -0.13 -4.29 5.90 31.89 0.19 -4.10 16 24 C -0.11 -3.21 6.79 31.67 0.22 -2.99 16 25 C -0.11 -2.87 6.80 31.32 0.21 -2.66 16 26 C -0.12 -3.24 5.69 31.32 0.18 -3.06 16 27 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 28 H 0.38 17.54 7.49 -92.70 -0.69 16.84 16 29 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 30 H 0.03 1.30 7.47 -2.39 -0.02 1.28 16 31 H 0.41 12.74 8.07 -92.71 -0.75 11.99 16 32 H 0.13 2.57 7.89 -2.39 -0.02 2.55 16 33 H 0.12 2.36 7.60 -2.39 -0.02 2.34 16 34 H 0.13 1.73 8.04 -2.39 -0.02 1.71 16 35 H 0.12 1.67 7.64 -2.38 -0.02 1.65 16 36 H 0.10 2.32 7.92 -2.39 -0.02 2.31 16 37 H 0.10 2.52 8.09 -2.39 -0.02 2.50 16 38 H 0.05 1.75 7.24 -2.39 -0.02 1.74 16 39 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 1.95 7.80 -2.39 -0.02 1.93 16 45 H 0.06 1.81 7.76 -2.39 -0.02 1.79 16 Total: -1.00 -61.85 373.36 4.10 -57.75 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -0.41 Total: 36.52 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 3.89 Total: 3.61 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -3.55 Total: -110.67 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.04 Total: -21.70 kcal Atomic # 9 Polarization: -14.28 SS G_CDS: 2.19 Total: -12.09 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -61.85 4.10 -57.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715305588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.906 kcal (2) G-P(sol) polarization free energy of solvation -61.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.61 seconds