Wall clock time and date at job start Tue Mar 31 2020 22:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00101 * 2 1 4 4 H 1.48500 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47046 * 299.99578 * 3 2 1 6 6 H 1.48499 * 109.47024 * 60.00082 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00298 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00198 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00422 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47166 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.46971 * 64.99989 * 11 10 9 13 13 N 1.46505 * 109.47197 * 305.00028 * 11 10 9 14 14 C 1.34771 * 119.99973 * 155.00219 * 13 11 10 15 15 O 1.21281 * 119.99995 * 359.97438 * 14 13 11 16 16 C 1.50701 * 120.00042 * 180.02562 * 14 13 11 17 17 C 1.52997 * 110.43371 * 59.29689 * 16 14 13 18 18 F 1.39892 * 109.47185 * 60.70339 * 17 16 14 19 19 F 1.39902 * 109.47005 * 180.70276 * 17 16 14 20 20 F 1.39906 * 109.47366 * 300.69930 * 17 16 14 21 21 C 1.54892 * 110.48312 * 296.75577 * 16 14 13 22 22 C 1.55239 * 102.58870 * 279.18738 * 21 16 14 23 23 C 1.54267 * 104.23059 * 322.08557 * 22 21 16 24 24 C 1.53879 * 106.59936 * 23.60819 * 23 22 21 25 25 C 1.52996 * 109.47023 * 185.00337 * 11 10 9 26 26 C 1.53000 * 117.49997 * 185.00174 * 25 11 10 27 27 C 1.53002 * 60.02940 * 252.49592 * 26 25 11 28 28 H 0.97006 * 119.99369 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99991 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.46819 * 59.99898 * 10 9 7 31 31 H 1.08998 * 109.47039 * 300.00005 * 10 9 7 32 32 H 0.97007 * 119.99871 * 335.00018 * 13 11 10 33 33 H 1.09000 * 110.75580 * 37.58172 * 21 16 14 34 34 H 1.09000 * 110.75394 * 160.94958 * 21 16 14 35 35 H 1.09002 * 110.46883 * 203.39913 * 22 21 16 36 36 H 1.08997 * 110.58306 * 80.82820 * 22 21 16 37 37 H 1.09002 * 110.03394 * 264.32677 * 23 22 21 38 38 H 1.08997 * 110.03251 * 142.89542 * 23 22 21 39 39 H 1.08994 * 110.03707 * 240.71622 * 24 23 22 40 40 H 1.09001 * 110.07030 * 119.30791 * 24 23 22 41 41 H 1.09007 * 115.55004 * 330.66846 * 25 11 10 42 42 H 1.09002 * 117.49833 * 359.97438 * 26 25 11 43 43 H 1.09002 * 117.49953 * 144.99738 * 26 25 11 44 44 H 1.09000 * 117.49996 * 107.50493 * 27 26 25 45 45 H 1.08999 * 117.49664 * 252.51862 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.4971 -4.8138 -0.9299 13 7 0.1446 -4.6758 1.1330 14 6 -1.0798 -5.2366 1.0822 15 8 -1.4210 -5.8600 0.0995 16 6 -2.0255 -5.0880 2.2462 17 6 -2.3101 -3.6095 2.5178 18 9 -2.9041 -3.0340 1.3896 19 9 -3.1760 -3.4945 3.6106 20 9 -1.1104 -2.9481 2.8019 21 6 -1.4417 -5.7687 3.5091 22 6 -1.7883 -7.2642 3.2783 23 6 -3.1884 -7.2335 2.6313 24 6 -3.3392 -5.8498 1.9751 25 6 1.8245 -6.1411 0.1270 26 6 1.0140 -7.4351 0.0285 27 6 1.5740 -6.9849 1.3793 28 1 -0.4849 0.8401 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6846 -3.7146 0.8905 31 1 2.6846 -3.7146 -0.8894 32 1 0.4174 -4.1768 1.9189 33 1 -0.3628 -5.6234 3.5625 34 1 -1.9280 -5.3938 4.4097 35 1 -1.8183 -7.7994 4.2273 36 1 -1.0666 -7.7252 2.6039 37 1 -3.9552 -7.3706 3.3938 38 1 -3.2681 -8.0155 1.8762 39 1 -4.1791 -5.3155 2.4192 40 1 -3.4925 -5.9596 0.9016 41 1 2.8317 -6.1452 -0.2897 42 1 -0.0613 -7.3450 -0.1255 43 1 1.4880 -8.2905 -0.4529 44 1 0.8671 -6.5986 2.1137 45 1 2.4166 -7.5438 1.7863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716631898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:36 Heat of formation + Delta-G solvation = -156.390925 kcal Electronic energy + Delta-G solvation = -32221.425697 eV Core-core repulsion = 27631.759514 eV Total energy + Delta-G solvation = -4589.666183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.93698 -47.45842 -47.31973 -40.65625 -38.16681 -36.61449 -34.93401 -33.41913 -31.41725 -30.48149 -29.09574 -28.01318 -24.72781 -24.12813 -22.87774 -22.28190 -21.49534 -20.91175 -19.86864 -19.78597 -18.47092 -18.03055 -17.89403 -17.22066 -16.43353 -16.26061 -15.79199 -15.13869 -14.81422 -14.40983 -14.24805 -14.17648 -14.11876 -13.76736 -13.58415 -13.49723 -13.44837 -13.36150 -13.28741 -13.19995 -12.87455 -12.23063 -11.86051 -11.68859 -11.61376 -11.43992 -11.42345 -11.33933 -11.27654 -11.12423 -10.88658 -10.82344 -10.63593 -10.25836 -10.07058 -9.81214 -9.70845 -9.60019 -8.90818 -8.77224 -6.93977 -5.74469 -3.05057 2.29885 3.01693 3.09118 3.44086 3.49342 3.51909 3.75723 3.87572 3.98313 4.10236 4.44344 4.56654 4.59115 4.70002 4.86893 4.89180 5.06616 5.11435 5.13255 5.15027 5.19953 5.37921 5.44296 5.54006 5.57034 5.68566 5.71457 5.74567 5.78544 5.89702 5.94176 5.97166 5.98477 6.15297 6.19720 6.28847 6.43209 6.45736 6.65100 6.84266 7.65548 7.70809 8.28007 8.42045 9.54122 10.09197 10.44347 11.47305 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.005179 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.120895 B = 5404.762058 C = 6954.168715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.148 3.852 11 C 0.167 3.833 12 H 0.093 0.907 13 N -0.700 5.700 14 C 0.533 3.467 15 O -0.519 6.519 16 C -0.136 4.136 17 C 0.465 3.535 18 F -0.168 7.168 19 F -0.181 7.181 20 F -0.165 7.165 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.107 4.107 25 C -0.160 4.160 26 C -0.185 4.185 27 C -0.180 4.180 28 H 0.254 0.746 29 H 0.386 0.614 30 H 0.026 0.974 31 H 0.036 0.964 32 H 0.408 0.592 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -17.012 8.306 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.020 3.980 11 C 0.062 3.938 12 H 0.111 0.889 13 N -0.352 5.352 14 C 0.317 3.683 15 O -0.395 6.395 16 C -0.141 4.141 17 C 0.410 3.590 18 F -0.149 7.149 19 F -0.163 7.163 20 F -0.147 7.147 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.180 4.180 26 C -0.221 4.221 27 C -0.217 4.217 28 H 0.064 0.936 29 H 0.220 0.780 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.246 0.754 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.297 -17.275 7.588 19.351 hybrid contribution 0.323 1.657 0.428 1.742 sum -3.973 -15.618 8.017 17.999 Atomic orbital electron populations 1.69689 1.05036 1.25511 1.57151 1.24745 0.95473 0.97631 1.02763 0.86148 0.78763 0.84263 0.77157 1.20589 1.21898 1.21905 1.19215 0.90987 0.83981 1.43293 0.91112 1.42334 1.05973 0.99662 1.89575 1.20921 0.92973 0.85104 0.99043 1.20843 0.90198 0.93123 0.89590 0.88909 1.46116 1.14130 1.53569 1.21370 1.19397 0.82173 0.79787 0.86943 1.90614 1.75662 1.41164 1.32102 1.23071 1.00545 0.91377 0.99070 1.20004 0.74963 0.89431 0.74584 1.93268 1.84012 1.86517 1.51131 1.93147 1.70842 1.96700 1.55569 1.93242 1.45058 1.82979 1.93380 1.22756 1.01757 0.96097 0.94499 1.22431 0.97393 0.94754 1.01322 1.22056 0.97051 0.96483 0.99770 1.22171 0.92669 0.95368 1.04300 1.22716 1.00476 0.91824 1.02976 1.23298 1.01957 0.97156 0.99728 1.22949 1.03300 1.03870 0.91569 0.93556 0.78011 0.95610 0.94660 0.75442 0.89751 0.88968 0.90574 0.90722 0.91238 0.90898 0.90258 0.88333 0.87094 0.86637 0.89672 0.88999 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.14 5.43 -59.91 -0.33 -18.47 16 10 C 0.15 2.86 5.78 -4.04 -0.02 2.84 16 11 C 0.17 2.77 2.57 -67.93 -0.17 2.59 16 12 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 13 N -0.70 -11.14 2.69 -53.81 -0.14 -11.28 16 14 C 0.53 8.30 4.77 -10.99 -0.05 8.25 16 15 O -0.52 -9.03 12.41 5.56 0.07 -8.96 16 16 C -0.14 -1.80 0.32 -154.00 -0.05 -1.85 16 17 C 0.46 7.37 2.23 37.16 0.08 7.45 16 18 F -0.17 -3.17 16.88 2.25 0.04 -3.13 16 19 F -0.18 -2.59 15.78 2.25 0.04 -2.55 16 20 F -0.17 -2.96 14.97 2.25 0.03 -2.93 16 21 C -0.11 -1.15 5.52 -24.55 -0.14 -1.29 16 22 C -0.12 -1.06 6.62 -24.88 -0.16 -1.23 16 23 C -0.12 -1.05 6.80 -25.61 -0.17 -1.23 16 24 C -0.11 -1.25 5.50 -25.61 -0.14 -1.39 16 25 C -0.16 -2.17 5.74 -90.59 -0.52 -2.69 16 26 C -0.18 -2.36 9.84 -26.73 -0.26 -2.62 16 27 C -0.18 -2.13 9.68 -26.69 -0.26 -2.39 16 28 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.39 10.33 7.33 -40.82 -0.30 10.04 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.41 6.58 6.54 -40.82 -0.27 6.32 16 33 H 0.08 0.83 6.68 -51.93 -0.35 0.49 16 34 H 0.09 0.85 7.42 -51.93 -0.39 0.46 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.71 7.73 -51.93 -0.40 0.31 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.86 7.29 -51.93 -0.38 0.48 16 40 H 0.10 1.31 6.86 -51.93 -0.36 0.95 16 41 H 0.11 1.39 8.08 -51.93 -0.42 0.97 16 42 H 0.12 1.71 5.26 -51.93 -0.27 1.44 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 1.09 4.91 -51.93 -0.25 0.83 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -31.16 361.75 -7.54 -38.70 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -6.28 Total: 13.99 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.12 Total: -0.81 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.25 Total: -57.19 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.07 Total: -8.96 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.11 Total: -8.61 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.16 -7.54 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716631898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.692 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds