Wall clock time and date at job start Tue Mar 31 2020 22:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00101 * 2 1 4 4 H 1.48500 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47046 * 299.99578 * 3 2 1 6 6 H 1.48499 * 109.47024 * 60.00082 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00298 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00198 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00422 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47166 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.46971 * 64.99989 * 11 10 9 13 13 N 1.46505 * 109.47197 * 305.00028 * 11 10 9 14 14 C 1.34771 * 119.99973 * 155.00219 * 13 11 10 15 15 O 1.21281 * 119.99995 * 359.97438 * 14 13 11 16 16 C 1.50701 * 120.00042 * 180.02562 * 14 13 11 17 17 C 1.52997 * 110.43371 * 59.29689 * 16 14 13 18 18 F 1.39892 * 109.47185 * 60.70339 * 17 16 14 19 19 F 1.39902 * 109.47005 * 180.70276 * 17 16 14 20 20 F 1.39906 * 109.47366 * 300.69930 * 17 16 14 21 21 C 1.54892 * 110.48312 * 296.75577 * 16 14 13 22 22 C 1.55239 * 102.58870 * 279.18738 * 21 16 14 23 23 C 1.54267 * 104.23059 * 322.08557 * 22 21 16 24 24 C 1.53879 * 106.59936 * 23.60819 * 23 22 21 25 25 C 1.52996 * 109.47023 * 185.00337 * 11 10 9 26 26 C 1.53000 * 117.49997 * 185.00174 * 25 11 10 27 27 C 1.53002 * 60.02940 * 252.49592 * 26 25 11 28 28 H 0.97006 * 119.99369 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99991 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.46819 * 59.99898 * 10 9 7 31 31 H 1.08998 * 109.47039 * 300.00005 * 10 9 7 32 32 H 0.97007 * 119.99871 * 335.00018 * 13 11 10 33 33 H 1.09000 * 110.75580 * 37.58172 * 21 16 14 34 34 H 1.09000 * 110.75394 * 160.94958 * 21 16 14 35 35 H 1.09002 * 110.46883 * 203.39913 * 22 21 16 36 36 H 1.08997 * 110.58306 * 80.82820 * 22 21 16 37 37 H 1.09002 * 110.03394 * 264.32677 * 23 22 21 38 38 H 1.08997 * 110.03251 * 142.89542 * 23 22 21 39 39 H 1.08994 * 110.03707 * 240.71622 * 24 23 22 40 40 H 1.09001 * 110.07030 * 119.30791 * 24 23 22 41 41 H 1.09007 * 115.55004 * 330.66846 * 25 11 10 42 42 H 1.09002 * 117.49833 * 359.97438 * 26 25 11 43 43 H 1.09002 * 117.49953 * 144.99738 * 26 25 11 44 44 H 1.09000 * 117.49996 * 107.50493 * 27 26 25 45 45 H 1.08999 * 117.49664 * 252.51862 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.4971 -4.8138 -0.9299 13 7 0.1446 -4.6758 1.1330 14 6 -1.0798 -5.2366 1.0822 15 8 -1.4210 -5.8600 0.0995 16 6 -2.0255 -5.0880 2.2462 17 6 -2.3101 -3.6095 2.5178 18 9 -2.9041 -3.0340 1.3896 19 9 -3.1760 -3.4945 3.6106 20 9 -1.1104 -2.9481 2.8019 21 6 -1.4417 -5.7687 3.5091 22 6 -1.7883 -7.2642 3.2783 23 6 -3.1884 -7.2335 2.6313 24 6 -3.3392 -5.8498 1.9751 25 6 1.8245 -6.1411 0.1270 26 6 1.0140 -7.4351 0.0285 27 6 1.5740 -6.9849 1.3793 28 1 -0.4849 0.8401 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6846 -3.7146 0.8905 31 1 2.6846 -3.7146 -0.8894 32 1 0.4174 -4.1768 1.9189 33 1 -0.3628 -5.6234 3.5625 34 1 -1.9280 -5.3938 4.4097 35 1 -1.8183 -7.7994 4.2273 36 1 -1.0666 -7.7252 2.6039 37 1 -3.9552 -7.3706 3.3938 38 1 -3.2681 -8.0155 1.8762 39 1 -4.1791 -5.3155 2.4192 40 1 -3.4925 -5.9596 0.9016 41 1 2.8317 -6.1452 -0.2897 42 1 -0.0613 -7.3450 -0.1255 43 1 1.4880 -8.2905 -0.4529 44 1 0.8671 -6.5986 2.1137 45 1 2.4166 -7.5438 1.7863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716631898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:15 Heat of formation + Delta-G solvation = -174.436765 kcal Electronic energy + Delta-G solvation = -32222.208224 eV Core-core repulsion = 27631.759514 eV Total energy + Delta-G solvation = -4590.448709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 19.68 seconds Orbital eigenvalues (eV) -51.25595 -48.74116 -48.72334 -41.83833 -39.24071 -37.74074 -36.55697 -34.93087 -33.16479 -31.65735 -30.10052 -29.46048 -26.06425 -25.81410 -24.08114 -23.40979 -22.93062 -21.74089 -21.05686 -20.98254 -19.76991 -19.28907 -19.22568 -19.07914 -17.51657 -17.49312 -17.08756 -16.67945 -15.98368 -15.75710 -15.59737 -15.48205 -15.28612 -15.20205 -15.09397 -14.97677 -14.86673 -14.75173 -14.44020 -14.36662 -14.34107 -13.66923 -13.14389 -12.97162 -12.79626 -12.69109 -12.61551 -12.51675 -12.38030 -12.26864 -12.13951 -12.11377 -12.04519 -11.83844 -11.41672 -11.22897 -11.00940 -10.94853 -10.76866 -10.07409 -9.00980 -7.92818 -5.23048 1.07194 1.47206 1.47751 1.57789 1.80062 1.87881 2.55458 2.64761 2.71310 2.91098 2.99214 3.41227 3.43492 3.46071 3.53859 3.66913 3.96061 4.09720 4.10888 4.18908 4.20438 4.30652 4.37028 4.41335 4.48689 4.59080 4.62690 4.72132 4.83556 4.87675 4.92337 4.98557 5.06697 5.11158 5.15773 5.20549 5.30202 5.39880 5.42480 5.48027 5.52133 6.26236 6.37022 7.02073 7.33868 8.06985 8.30367 9.29840 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.005179 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.120895 B = 5404.762058 C = 6954.168715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.148 3.852 11 C 0.176 3.824 12 H 0.063 0.937 13 N -0.700 5.700 14 C 0.532 3.468 15 O -0.541 6.541 16 C -0.130 4.130 17 C 0.458 3.542 18 F -0.192 7.192 19 F -0.170 7.170 20 F -0.181 7.181 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.111 4.111 24 C -0.109 4.109 25 C -0.171 4.171 26 C -0.183 4.183 27 C -0.162 4.162 28 H 0.248 0.752 29 H 0.372 0.628 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.407 0.593 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 -18.807 9.959 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.225 1.225 6 H -0.223 1.223 7 C -0.374 4.374 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.021 3.979 11 C 0.072 3.928 12 H 0.081 0.919 13 N -0.351 5.351 14 C 0.316 3.684 15 O -0.418 6.418 16 C -0.135 4.135 17 C 0.404 3.596 18 F -0.174 7.174 19 F -0.152 7.152 20 F -0.162 7.162 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.149 4.149 24 C -0.147 4.147 25 C -0.190 4.190 26 C -0.219 4.219 27 C -0.199 4.199 28 H 0.057 0.943 29 H 0.204 0.796 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.245 0.755 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.144 0.856 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.017 -19.108 9.247 21.441 hybrid contribution -0.067 2.190 -0.118 2.194 sum -3.085 -16.918 9.129 19.470 Atomic orbital electron populations 1.69863 1.06670 1.25715 1.59364 1.25546 0.96242 1.01031 1.03701 0.85104 0.78405 0.80009 0.76398 1.18725 1.22479 1.22270 1.19643 0.91560 0.85021 1.41139 0.90181 1.42518 1.05552 1.00988 1.89500 1.21074 0.93406 0.83850 0.99531 1.20592 0.89601 0.93914 0.88741 0.91895 1.46100 1.14423 1.53617 1.20991 1.19750 0.82121 0.79161 0.87320 1.90610 1.76002 1.42151 1.33072 1.23149 1.01000 0.89616 0.99706 1.20460 0.74452 0.90540 0.74164 1.93217 1.84416 1.87154 1.52581 1.93157 1.70429 1.96743 1.54840 1.93205 1.45980 1.83568 1.93442 1.22892 1.01998 0.96809 0.93180 1.22433 0.96658 0.93626 1.02503 1.22072 0.98168 0.94385 1.00226 1.22240 0.92036 0.97090 1.03353 1.22615 1.00783 0.90340 1.05301 1.23237 1.00725 0.97092 1.00878 1.23045 1.03622 1.02408 0.90811 0.94316 0.79589 0.94213 0.94148 0.75521 0.89388 0.87467 0.87691 0.91554 0.88874 0.90911 0.89539 0.90541 0.85649 0.88809 0.87802 0.89081 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 3 Si 0.97 46.57 29.55 68.60 2.03 48.59 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 7 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.74 -37.41 5.43 -343.46 -1.87 -39.28 16 10 C 0.15 5.69 5.78 86.38 0.50 6.19 16 11 C 0.18 5.88 2.57 44.99 0.12 5.99 16 12 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 13 N -0.70 -22.46 2.69 -442.54 -1.19 -23.65 16 14 C 0.53 16.78 4.77 87.66 0.42 17.20 16 15 O -0.54 -19.38 12.41 -3.03 -0.04 -19.42 16 16 C -0.13 -3.40 0.32 -51.85 -0.02 -3.42 16 17 C 0.46 14.75 2.23 71.98 0.16 14.91 16 18 F -0.19 -7.59 16.88 44.97 0.76 -6.83 16 19 F -0.17 -4.78 15.78 44.97 0.71 -4.07 16 20 F -0.18 -6.61 14.97 44.97 0.67 -5.94 16 21 C -0.11 -2.03 5.52 32.01 0.18 -1.86 16 22 C -0.11 -1.68 6.62 31.79 0.21 -1.47 16 23 C -0.11 -1.76 6.80 31.32 0.21 -1.55 16 24 C -0.11 -2.49 5.50 31.32 0.17 -2.32 16 25 C -0.17 -4.37 5.74 -10.77 -0.06 -4.43 16 26 C -0.18 -4.37 9.84 30.60 0.30 -4.07 16 27 C -0.16 -3.42 9.68 30.62 0.30 -3.12 16 28 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 29 H 0.37 20.64 7.33 -92.71 -0.68 19.96 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.41 13.20 6.54 -92.70 -0.61 12.59 16 33 H 0.09 1.56 6.68 -2.39 -0.02 1.54 16 34 H 0.11 1.67 7.42 -2.39 -0.02 1.65 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.10 7.73 -2.39 -0.02 1.08 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.81 7.29 -2.39 -0.02 1.80 16 40 H 0.08 2.09 6.86 -2.39 -0.02 2.07 16 41 H 0.13 2.85 8.08 -2.38 -0.02 2.83 16 42 H 0.09 2.74 5.26 -2.39 -0.01 2.72 16 43 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.09 1.95 4.91 -2.39 -0.01 1.94 16 45 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -68.72 361.75 4.91 -63.81 By element: Atomic # 1 Polarization: 41.28 SS G_CDS: -0.24 Total: 41.04 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 3.79 Total: 5.79 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -2.77 Total: -122.97 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.04 Total: -19.42 kcal Atomic # 9 Polarization: -18.98 SS G_CDS: 2.14 Total: -16.84 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -68.72 4.91 -63.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716631898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.626 kcal (2) G-P(sol) polarization free energy of solvation -68.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.68 seconds