Wall clock time and date at job start Tue Mar 31 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47068 * 270.00577 * 3 2 1 5 5 H 1.48500 * 109.46934 * 30.00048 * 3 2 1 6 6 H 1.48495 * 109.47301 * 150.00231 * 3 2 1 7 7 C 1.38807 * 120.00496 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00441 * 197.35119 * 7 2 1 9 9 N 1.36940 * 120.00099 * 17.34698 * 7 2 1 10 10 C 1.46927 * 120.62779 * 27.70020 * 9 7 2 11 11 C 1.53188 * 108.76549 * 126.36287 * 10 9 7 12 12 C 1.53037 * 109.31388 * 54.65628 * 11 10 9 13 13 F 1.39900 * 109.46571 * 178.60274 * 12 11 10 14 14 F 1.39903 * 109.46163 * 58.62757 * 12 11 10 15 15 C 1.53042 * 109.52764 * 298.61568 * 12 11 10 16 16 H 1.09000 * 109.49581 * 301.42349 * 15 12 11 17 17 C 1.52997 * 109.50142 * 181.32130 * 15 12 11 18 18 N 1.46498 * 109.47144 * 174.99953 * 17 15 12 19 19 C 1.34784 * 119.99786 * 179.97438 * 18 17 15 20 20 O 1.21281 * 119.99915 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.99649 * 180.02562 * 19 18 17 22 22 F 1.39896 * 110.01941 * 54.30277 * 21 19 18 23 23 C 1.54272 * 110.03300 * 292.90830 * 21 19 18 24 24 C 1.54967 * 104.15949 * 217.13960 * 23 21 19 25 25 C 1.54887 * 102.77761 * 37.88818 * 24 23 21 26 26 C 1.53881 * 110.02917 * 175.69508 * 21 19 18 27 27 C 1.46919 * 120.63335 * 207.68217 * 9 7 2 28 28 H 0.96997 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.58660 * 246.15943 * 10 9 7 30 30 H 1.09005 * 109.58798 * 6.58200 * 10 9 7 31 31 H 1.09007 * 109.50931 * 294.69721 * 11 10 9 32 32 H 1.09003 * 109.48558 * 174.60093 * 11 10 9 33 33 H 1.08996 * 109.47163 * 295.00357 * 17 15 12 34 34 H 1.09000 * 109.46704 * 54.99831 * 17 15 12 35 35 H 0.96997 * 120.00376 * 0.02562 * 18 17 15 36 36 H 1.09001 * 110.48675 * 335.78447 * 23 21 19 37 37 H 1.08998 * 110.48210 * 98.42975 * 23 21 19 38 38 H 1.08998 * 110.72131 * 279.57513 * 24 23 21 39 39 H 1.09000 * 110.92015 * 156.29522 * 24 23 21 40 40 H 1.08998 * 110.48856 * 203.40771 * 25 24 23 41 41 H 1.09000 * 110.59805 * 80.81786 * 25 24 23 42 42 H 1.09001 * 110.02629 * 238.56978 * 26 21 19 43 43 H 1.09002 * 110.03126 * 359.94985 * 26 21 19 44 44 H 1.09001 * 109.58940 * 113.84583 * 27 9 7 45 45 H 1.08998 * 109.59049 * 353.41308 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0534 -1.2234 0.2784 9 7 1.3724 -2.3609 -0.3546 10 6 0.2281 -2.3341 -1.2758 11 6 0.5019 -3.3031 -2.4302 12 6 0.8197 -4.6887 -1.8634 13 9 1.0391 -5.5839 -2.9159 14 9 -0.2573 -5.1341 -1.0895 15 6 2.0752 -4.6091 -0.9918 16 1 2.9090 -4.2384 -1.5880 17 6 2.4114 -6.0007 -0.4522 18 7 3.6776 -5.9468 0.2827 19 6 4.1750 -7.0632 0.8509 20 8 3.5747 -8.1125 0.7533 21 6 5.4772 -7.0076 1.6073 22 9 5.4151 -6.0194 2.5956 23 6 6.6398 -6.7124 0.6371 24 6 7.8132 -7.5663 1.1805 25 6 7.1065 -8.8645 1.6434 26 6 5.7739 -8.3752 2.2472 27 6 1.8196 -3.6547 0.1789 28 1 -0.4850 0.8400 0.0004 29 1 -0.6741 -2.6412 -0.7467 30 1 0.0985 -1.3255 -1.6683 31 1 1.3507 -2.9448 -3.0127 32 1 -0.3787 -3.3649 -3.0696 33 1 1.6171 -6.3328 0.2163 34 1 2.5030 -6.7002 -1.2831 35 1 4.1575 -5.1076 0.3610 36 1 6.3798 -7.0218 -0.3752 37 1 6.8955 -5.6530 0.6594 38 1 8.2956 -7.0682 2.0215 39 1 8.5364 -7.7798 0.3934 40 1 7.7031 -9.3750 2.3994 41 1 6.9217 -9.5238 0.7953 42 1 5.8703 -8.2688 3.3277 43 1 4.9755 -9.0789 2.0113 44 1 1.0472 -4.0696 0.8265 45 1 2.7402 -3.5176 0.7462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716911854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:18 Heat of formation + Delta-G solvation = -179.485147 kcal Electronic energy + Delta-G solvation = -30559.532842 eV Core-core repulsion = 25968.865218 eV Total energy + Delta-G solvation = -4590.667623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 38.03 seconds Orbital eigenvalues (eV) -48.56615 -48.03184 -46.51678 -39.98405 -37.65069 -36.98036 -35.11621 -32.77014 -31.08601 -30.28035 -29.15299 -28.96984 -25.75507 -25.17455 -22.84587 -22.13830 -21.42070 -21.14618 -20.00850 -19.53984 -18.26881 -17.09818 -16.86464 -16.70387 -16.25176 -15.77552 -15.49008 -15.41491 -15.28859 -14.77748 -14.65039 -14.27466 -14.14959 -13.72183 -13.58599 -13.46485 -13.30305 -13.14926 -12.84663 -12.81099 -12.26078 -12.20248 -11.85839 -11.71818 -11.67582 -11.59247 -11.52190 -11.46264 -11.26203 -11.12228 -10.88336 -10.85939 -10.66673 -10.53294 -10.09403 -9.96514 -9.91675 -9.65030 -9.15830 -8.63386 -6.92979 -5.95636 -3.40362 2.32012 2.85929 3.29163 3.36539 3.37928 3.89833 4.00146 4.14140 4.30006 4.34449 4.40834 4.58266 4.63907 4.85435 4.86305 4.93441 5.05134 5.13326 5.16381 5.24455 5.25156 5.36967 5.45895 5.49018 5.56081 5.58278 5.68733 5.80135 5.85656 5.90612 5.94015 5.98230 6.11841 6.23442 6.26840 6.30565 6.40339 6.66017 7.07645 7.30415 7.42456 7.63890 7.95946 8.24498 9.00870 9.63152 10.18226 11.13544 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.003642 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.640479 B = 7685.731692 C = 9311.675163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.263 4.263 8 H 0.070 0.930 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.178 4.178 12 C 0.300 3.700 13 F -0.213 7.213 14 F -0.199 7.199 15 C -0.155 4.155 16 H 0.102 0.898 17 C 0.123 3.877 18 N -0.710 5.710 19 C 0.503 3.497 20 O -0.525 6.525 21 C 0.101 3.899 22 F -0.189 7.189 23 C -0.143 4.143 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.143 4.143 27 C 0.152 3.848 28 H 0.257 0.743 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.407 0.593 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.033 0.967 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.997 -13.240 -0.823 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.192 4.192 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.043 3.957 11 C -0.218 4.218 12 C 0.264 3.736 13 F -0.195 7.195 14 F -0.180 7.180 15 C -0.177 4.177 16 H 0.121 0.879 17 C -0.001 4.001 18 N -0.361 5.361 19 C 0.286 3.714 20 O -0.401 6.401 21 C 0.080 3.920 22 F -0.170 7.170 23 C -0.181 4.181 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.181 4.181 27 C 0.025 3.975 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.121 0.879 44 H 0.051 0.949 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.393 -13.818 -0.849 17.929 hybrid contribution 0.400 1.274 0.011 1.335 sum 11.793 -12.544 -0.838 17.238 Atomic orbital electron populations 1.70018 1.05334 1.25944 1.52918 1.25079 0.95310 0.98633 1.00193 0.86245 0.79143 0.83319 0.77774 1.21281 1.21639 1.20293 1.19176 0.92858 0.84478 1.42663 0.91221 1.44097 1.35714 1.01312 1.50030 1.20855 0.89352 0.98301 0.87143 1.23273 1.03372 0.92835 1.02357 1.21025 0.84842 0.87656 0.80099 1.92956 1.95143 1.71745 1.59608 1.92970 1.58189 1.90870 1.75945 1.22983 0.97203 0.96744 1.00765 0.87930 1.21403 0.85538 0.96721 0.96430 1.45925 1.24390 1.11614 1.54178 1.20669 0.86511 0.84258 0.79949 1.90699 1.59583 1.29743 1.60096 1.21826 0.94374 0.88701 0.87109 1.92939 1.97290 1.63533 1.63228 1.23013 0.93774 1.02530 0.98763 1.22530 0.96833 0.95553 1.01141 1.22351 0.95140 0.97515 1.00944 1.22757 0.99950 0.94403 1.01006 1.20923 0.99025 0.86374 0.91205 0.93298 0.94937 0.88059 0.89555 0.90501 0.90418 0.90752 0.75706 0.89407 0.89079 0.90704 0.90549 0.90783 0.90943 0.89726 0.87878 0.94895 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 11.19 55.49 0.62 -24.15 16 2 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 3 Si 0.91 20.51 29.59 -169.99 -5.03 15.48 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.26 -6.67 9.58 -15.06 -0.14 -6.81 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -13.63 2.99 -172.32 -0.52 -14.15 16 10 C 0.17 3.79 5.11 -3.71 -0.02 3.77 16 11 C -0.18 -3.23 5.62 -26.61 -0.15 -3.37 16 12 C 0.30 5.25 1.63 -26.69 -0.04 5.21 16 13 F -0.21 -3.62 16.41 2.25 0.04 -3.58 16 14 F -0.20 -3.79 15.73 2.25 0.04 -3.75 16 15 C -0.16 -2.51 2.03 -90.50 -0.18 -2.70 16 16 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 17 C 0.12 1.84 4.83 -4.04 -0.02 1.82 16 18 N -0.71 -9.46 5.33 -60.30 -0.32 -9.78 16 19 C 0.50 6.96 6.70 -10.98 -0.07 6.88 16 20 O -0.53 -8.75 15.22 5.56 0.08 -8.66 16 21 C 0.10 1.14 1.48 -90.65 -0.13 1.01 16 22 F -0.19 -2.42 16.78 2.25 0.04 -2.38 16 23 C -0.14 -1.24 6.14 -25.03 -0.15 -1.40 16 24 C -0.12 -0.88 6.91 -24.70 -0.17 -1.05 16 25 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 26 C -0.14 -1.44 6.25 -25.61 -0.16 -1.60 16 27 C 0.15 2.93 5.40 -3.71 -0.02 2.91 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 30 H 0.10 2.50 6.04 -51.93 -0.31 2.19 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.27 7.97 -51.93 -0.41 0.86 16 34 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 35 H 0.41 4.87 7.71 -40.82 -0.31 4.55 16 36 H 0.09 0.74 7.85 -51.93 -0.41 0.34 16 37 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.80 8.02 -51.93 -0.42 0.38 16 43 H 0.10 1.19 6.40 -51.93 -0.33 0.86 16 44 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 45 H 0.07 1.21 7.14 -51.93 -0.37 0.84 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -29.27 363.87 -7.81 -37.08 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.72 Total: 4.74 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.53 Total: 3.67 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.22 Total: -48.07 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.66 kcal Atomic # 9 Polarization: -9.83 SS G_CDS: 0.11 Total: -9.72 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.27 -7.81 -37.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716911854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.405 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 38.03 seconds