Wall clock time and date at job start Tue Mar 31 2020 22:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47068 * 270.00577 * 3 2 1 5 5 H 1.48500 * 109.46934 * 30.00048 * 3 2 1 6 6 H 1.48495 * 109.47301 * 150.00231 * 3 2 1 7 7 C 1.38807 * 120.00496 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00441 * 197.35119 * 7 2 1 9 9 N 1.36940 * 120.00099 * 17.34698 * 7 2 1 10 10 C 1.46927 * 120.62779 * 27.70020 * 9 7 2 11 11 C 1.53188 * 108.76549 * 126.36287 * 10 9 7 12 12 C 1.53037 * 109.31388 * 54.65628 * 11 10 9 13 13 F 1.39900 * 109.46571 * 178.60274 * 12 11 10 14 14 F 1.39903 * 109.46163 * 58.62757 * 12 11 10 15 15 C 1.53042 * 109.52764 * 298.61568 * 12 11 10 16 16 H 1.09000 * 109.49581 * 301.42349 * 15 12 11 17 17 C 1.52997 * 109.50142 * 181.32130 * 15 12 11 18 18 N 1.46498 * 109.47144 * 174.99953 * 17 15 12 19 19 C 1.34784 * 119.99786 * 179.97438 * 18 17 15 20 20 O 1.21281 * 119.99915 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.99649 * 180.02562 * 19 18 17 22 22 F 1.39896 * 110.01941 * 54.30277 * 21 19 18 23 23 C 1.54272 * 110.03300 * 292.90830 * 21 19 18 24 24 C 1.54967 * 104.15949 * 217.13960 * 23 21 19 25 25 C 1.54887 * 102.77761 * 37.88818 * 24 23 21 26 26 C 1.53881 * 110.02917 * 175.69508 * 21 19 18 27 27 C 1.46919 * 120.63335 * 207.68217 * 9 7 2 28 28 H 0.96997 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.58660 * 246.15943 * 10 9 7 30 30 H 1.09005 * 109.58798 * 6.58200 * 10 9 7 31 31 H 1.09007 * 109.50931 * 294.69721 * 11 10 9 32 32 H 1.09003 * 109.48558 * 174.60093 * 11 10 9 33 33 H 1.08996 * 109.47163 * 295.00357 * 17 15 12 34 34 H 1.09000 * 109.46704 * 54.99831 * 17 15 12 35 35 H 0.96997 * 120.00376 * 0.02562 * 18 17 15 36 36 H 1.09001 * 110.48675 * 335.78447 * 23 21 19 37 37 H 1.08998 * 110.48210 * 98.42975 * 23 21 19 38 38 H 1.08998 * 110.72131 * 279.57513 * 24 23 21 39 39 H 1.09000 * 110.92015 * 156.29522 * 24 23 21 40 40 H 1.08998 * 110.48856 * 203.40771 * 25 24 23 41 41 H 1.09000 * 110.59805 * 80.81786 * 25 24 23 42 42 H 1.09001 * 110.02629 * 238.56978 * 26 21 19 43 43 H 1.09002 * 110.03126 * 359.94985 * 26 21 19 44 44 H 1.09001 * 109.58940 * 113.84583 * 27 9 7 45 45 H 1.08998 * 109.59049 * 353.41308 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0534 -1.2234 0.2784 9 7 1.3724 -2.3609 -0.3546 10 6 0.2281 -2.3341 -1.2758 11 6 0.5019 -3.3031 -2.4302 12 6 0.8197 -4.6887 -1.8634 13 9 1.0391 -5.5839 -2.9159 14 9 -0.2573 -5.1341 -1.0895 15 6 2.0752 -4.6091 -0.9918 16 1 2.9090 -4.2384 -1.5880 17 6 2.4114 -6.0007 -0.4522 18 7 3.6776 -5.9468 0.2827 19 6 4.1750 -7.0632 0.8509 20 8 3.5747 -8.1125 0.7533 21 6 5.4772 -7.0076 1.6073 22 9 5.4151 -6.0194 2.5956 23 6 6.6398 -6.7124 0.6371 24 6 7.8132 -7.5663 1.1805 25 6 7.1065 -8.8645 1.6434 26 6 5.7739 -8.3752 2.2472 27 6 1.8196 -3.6547 0.1789 28 1 -0.4850 0.8400 0.0004 29 1 -0.6741 -2.6412 -0.7467 30 1 0.0985 -1.3255 -1.6683 31 1 1.3507 -2.9448 -3.0127 32 1 -0.3787 -3.3649 -3.0696 33 1 1.6171 -6.3328 0.2163 34 1 2.5030 -6.7002 -1.2831 35 1 4.1575 -5.1076 0.3610 36 1 6.3798 -7.0218 -0.3752 37 1 6.8955 -5.6530 0.6594 38 1 8.2956 -7.0682 2.0215 39 1 8.5364 -7.7798 0.3934 40 1 7.7031 -9.3750 2.3994 41 1 6.9217 -9.5238 0.7953 42 1 5.8703 -8.2688 3.3277 43 1 4.9755 -9.0789 2.0113 44 1 1.0472 -4.0696 0.8265 45 1 2.7402 -3.5176 0.7462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716911854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:37 Heat of formation + Delta-G solvation = -195.771873 kcal Electronic energy + Delta-G solvation = -30560.239087 eV Core-core repulsion = 25968.865218 eV Total energy + Delta-G solvation = -4591.373869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 45.43 seconds Orbital eigenvalues (eV) -50.01722 -48.98437 -47.97149 -41.09209 -39.08680 -37.88719 -36.49054 -34.44928 -32.52993 -32.02665 -29.87547 -29.84179 -27.27520 -26.82207 -24.24179 -23.55740 -22.68555 -21.82708 -21.30059 -20.80642 -19.36833 -18.78740 -18.31854 -17.85774 -17.33965 -17.10183 -16.91315 -16.74589 -16.40221 -16.20714 -15.76899 -15.50181 -15.36771 -15.14450 -14.82871 -14.71276 -14.61229 -14.31010 -14.28758 -14.09966 -13.83264 -13.30801 -13.22283 -13.11875 -13.06596 -13.03523 -12.62274 -12.54720 -12.28298 -12.20129 -12.17291 -12.12592 -11.92756 -11.88206 -11.67034 -11.50727 -11.34972 -10.88223 -10.58485 -10.33681 -8.82866 -7.92052 -5.39007 1.22722 1.50759 1.52472 1.60634 1.76834 2.48690 2.74883 3.06259 3.13819 3.20277 3.23177 3.27169 3.42120 3.48877 3.56809 3.63273 3.87857 4.03292 4.19438 4.22136 4.27631 4.37290 4.41785 4.45652 4.53926 4.59529 4.65813 4.74213 4.80099 4.82084 4.85936 4.96569 5.03247 5.08985 5.12990 5.16940 5.24703 5.28295 5.38575 5.57490 5.65274 6.22209 6.32558 6.87620 7.07245 7.74457 8.26932 9.16058 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.003642 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.640479 B = 7685.731692 C = 9311.675163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.045 4.045 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.266 4.266 8 H 0.079 0.921 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.168 4.168 12 C 0.300 3.700 13 F -0.205 7.205 14 F -0.210 7.210 15 C -0.139 4.139 16 H 0.122 0.878 17 C 0.133 3.867 18 N -0.704 5.704 19 C 0.500 3.500 20 O -0.557 6.557 21 C 0.099 3.901 22 F -0.199 7.199 23 C -0.141 4.141 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.146 4.146 27 C 0.154 3.846 28 H 0.252 0.748 29 H 0.003 0.997 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.416 0.584 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.014 0.986 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.723 -13.722 -1.505 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.241 4.241 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.395 4.395 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.051 3.949 11 C -0.208 4.208 12 C 0.263 3.737 13 F -0.186 7.186 14 F -0.191 7.191 15 C -0.160 4.160 16 H 0.140 0.860 17 C 0.009 3.991 18 N -0.355 5.355 19 C 0.285 3.715 20 O -0.435 6.435 21 C 0.078 3.922 22 F -0.179 7.179 23 C -0.179 4.179 24 C -0.155 4.155 25 C -0.155 4.155 26 C -0.184 4.184 27 C 0.028 3.972 28 H 0.061 0.939 29 H 0.022 0.978 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.253 0.747 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.032 0.968 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.154 -14.313 -1.534 20.188 hybrid contribution -0.502 1.364 0.264 1.477 sum 13.652 -12.949 -1.270 18.859 Atomic orbital electron populations 1.70174 1.06815 1.26145 1.54859 1.25815 0.95934 1.01635 1.00719 0.85253 0.78136 0.79326 0.77619 1.20967 1.22773 1.19024 1.19566 0.93367 0.85285 1.41322 0.90289 1.44323 1.35643 1.02114 1.50647 1.20581 0.88349 0.97910 0.88095 1.23097 1.04820 0.92045 1.00795 1.21038 0.84967 0.87350 0.80302 1.92971 1.95066 1.71368 1.59210 1.92957 1.58906 1.90963 1.76308 1.22778 0.97202 0.96542 0.99440 0.85978 1.21184 0.85878 0.95766 0.96303 1.45863 1.23760 1.12075 1.53832 1.21197 0.87106 0.83659 0.79568 1.90686 1.60668 1.30899 1.61282 1.22002 0.93717 0.89150 0.87322 1.92921 1.97296 1.64016 1.63696 1.23069 0.93095 1.03545 0.98147 1.22552 0.96429 0.94693 1.01864 1.22363 0.93872 0.97972 1.01327 1.22789 1.00830 0.93356 1.01412 1.20956 0.98758 0.85285 0.92245 0.93928 0.97849 0.90648 0.88067 0.88886 0.92131 0.90278 0.74705 0.89079 0.88148 0.90167 0.88673 0.89123 0.90867 0.89350 0.89785 0.96810 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.68 11.19 21.65 0.24 -52.44 16 2 C -0.05 -2.36 4.91 84.86 0.42 -1.94 16 3 Si 0.97 42.05 29.59 68.60 2.03 44.08 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.27 -13.35 9.58 84.03 0.81 -12.54 16 8 H 0.08 3.75 7.89 -2.91 -0.02 3.73 16 9 N -0.60 -27.86 2.99 -699.10 -2.09 -29.95 16 10 C 0.18 8.00 5.11 86.36 0.44 8.44 16 11 C -0.17 -5.88 5.62 30.67 0.17 -5.70 16 12 C 0.30 10.09 1.63 30.62 0.05 10.14 16 13 F -0.21 -6.50 16.41 44.97 0.74 -5.76 16 14 F -0.21 -7.97 15.73 44.97 0.71 -7.26 16 15 C -0.14 -4.26 2.03 -10.71 -0.02 -4.28 16 16 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 17 C 0.13 3.83 4.83 86.38 0.42 4.25 16 18 N -0.70 -17.79 5.33 -463.07 -2.47 -20.26 16 19 C 0.50 13.41 6.70 87.65 0.59 13.99 16 20 O -0.56 -18.48 15.22 -3.03 -0.05 -18.53 16 21 C 0.10 2.10 1.48 -10.81 -0.02 2.09 16 22 F -0.20 -4.81 16.78 44.97 0.75 -4.06 16 23 C -0.14 -2.09 6.14 31.70 0.19 -1.90 16 24 C -0.12 -1.33 6.91 31.91 0.22 -1.11 16 25 C -0.12 -1.52 6.83 31.67 0.22 -1.31 16 26 C -0.15 -2.77 6.25 31.32 0.20 -2.57 16 27 C 0.15 5.83 5.40 86.37 0.47 6.29 16 28 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.00 0.17 7.92 -2.38 -0.02 0.15 16 30 H 0.08 3.82 6.04 -2.38 -0.01 3.80 16 31 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 32 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.06 1.98 7.97 -2.39 -0.02 1.96 16 34 H 0.08 2.25 7.63 -2.39 -0.02 2.24 16 35 H 0.42 9.11 7.71 -92.71 -0.71 8.40 16 36 H 0.09 1.31 7.85 -2.39 -0.02 1.29 16 37 H 0.10 1.32 8.11 -2.39 -0.02 1.30 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 1.57 8.02 -2.39 -0.02 1.55 16 43 H 0.08 1.93 6.40 -2.39 -0.02 1.92 16 44 H 0.01 0.58 7.92 -2.39 -0.02 0.56 16 45 H 0.08 2.76 7.14 -2.39 -0.02 2.74 16 Total: -1.00 -63.38 363.87 4.31 -59.07 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.30 Total: 21.26 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 4.15 Total: 13.85 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -4.32 Total: -102.66 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.05 Total: -18.53 kcal Atomic # 9 Polarization: -19.28 SS G_CDS: 2.20 Total: -17.08 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -63.38 4.31 -59.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716911854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.700 kcal (2) G-P(sol) polarization free energy of solvation -63.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 45.44 seconds