Wall clock time and date at job start Tue Mar 31 2020 21:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00430 * 2 1 4 4 H 1.48502 * 109.47022 * 265.20181 * 3 2 1 5 5 H 1.48492 * 109.46735 * 25.20192 * 3 2 1 6 6 H 1.48498 * 109.47060 * 145.20133 * 3 2 1 7 7 C 1.38815 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99530 * 333.00194 * 7 2 1 9 9 N 1.36933 * 120.00279 * 152.99416 * 7 2 1 10 10 C 1.47018 * 125.64791 * 349.70283 * 9 7 2 11 11 C 1.54326 * 107.27077 * 181.02164 * 10 9 7 12 12 C 1.55157 * 102.94369 * 22.19167 * 11 10 9 13 13 O 1.42899 * 111.00207 * 82.57088 * 12 11 10 14 14 C 1.53003 * 111.00339 * 206.38768 * 12 11 10 15 15 N 1.46503 * 109.46567 * 180.02562 * 14 12 11 16 16 C 1.34777 * 119.99504 * 180.02562 * 15 14 12 17 17 O 1.21696 * 120.00170 * 359.97438 * 16 15 14 18 18 C 1.46664 * 119.99822 * 180.02562 * 16 15 14 19 19 C 1.36772 * 125.95567 * 180.02562 * 18 16 15 20 20 C 1.39655 * 106.53025 * 179.97438 * 19 18 16 21 21 C 1.35574 * 107.41650 * 0.02973 * 20 19 18 22 22 O 1.33491 * 108.60669 * 359.68672 * 21 20 19 23 23 C 1.50991 * 123.79090 * 179.88750 * 21 20 19 24 24 C 1.53331 * 108.42213 * 343.25146 * 23 21 20 25 25 C 1.53108 * 109.54943 * 50.17274 * 24 23 21 26 26 C 1.50694 * 128.11984 * 180.02562 * 20 19 18 27 27 C 1.47432 * 125.64697 * 169.39206 * 9 7 2 28 28 H 0.96998 * 120.00029 * 185.04640 * 1 2 3 29 29 H 1.08994 * 109.88300 * 300.43777 * 10 9 7 30 30 H 1.09004 * 109.88225 * 61.60548 * 10 9 7 31 31 H 1.08996 * 110.72115 * 140.55445 * 11 10 9 32 32 H 1.09000 * 110.71762 * 263.65246 * 11 10 9 33 33 H 0.96704 * 113.99845 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.47044 * 299.99961 * 14 12 11 35 35 H 1.08998 * 109.47235 * 60.00148 * 14 12 11 36 36 H 0.96993 * 120.00799 * 359.97438 * 15 14 12 37 37 H 1.07997 * 126.73299 * 359.97093 * 19 18 16 38 38 H 1.09003 * 109.67962 * 223.52132 * 23 21 20 39 39 H 1.09000 * 109.70877 * 103.00194 * 23 21 20 40 40 H 1.08997 * 109.45691 * 290.15209 * 24 23 21 41 41 H 1.08994 * 109.44087 * 170.18896 * 24 23 21 42 42 H 1.09005 * 109.47378 * 169.78678 * 25 24 23 43 43 H 1.08993 * 109.48998 * 49.76716 * 25 24 23 44 44 H 1.08998 * 109.68894 * 283.26944 * 26 20 19 45 45 H 1.09000 * 109.68943 * 43.82964 * 26 20 19 46 46 H 1.08998 * 110.36548 * 274.74830 * 27 9 7 47 47 H 1.08998 * 110.36594 * 37.07039 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5993 1.9878 -1.3952 5 1 1.4008 2.6797 0.5961 6 1 3.4934 1.4714 0.7990 7 6 2.0103 -1.2022 0.0005 8 1 1.5584 -2.0863 0.4256 9 7 3.2676 -1.2671 -0.5379 10 6 3.9149 -0.2131 -1.3325 11 6 5.3064 -0.7387 -1.7439 12 6 5.1422 -2.2778 -1.6365 13 8 4.5332 -2.8113 -2.8140 14 6 6.4866 -2.9550 -1.3629 15 7 6.2931 -4.4041 -1.2686 16 6 7.3464 -5.2104 -1.0299 17 8 8.4582 -4.7347 -0.8931 18 6 7.1529 -6.6612 -0.9360 19 6 8.1303 -7.5880 -0.6986 20 6 7.5019 -8.8352 -0.6918 21 6 6.1825 -8.6261 -0.9229 22 8 5.9772 -7.3145 -1.0627 23 6 5.1569 -9.7320 -0.9949 24 6 5.8927 -11.0632 -1.1892 25 6 7.0077 -11.1891 -0.1476 26 6 8.1253 -10.1898 -0.4738 27 6 4.1988 -2.4031 -0.4114 28 1 -0.4850 -0.8368 0.0739 29 1 3.3209 -0.0014 -2.2215 30 1 4.0226 0.6904 -0.7322 31 1 5.5419 -0.4465 -2.7672 32 1 6.0726 -0.3810 -1.0561 33 1 4.4104 -3.7703 -2.7933 34 1 7.1774 -2.7331 -2.1763 35 1 6.8976 -2.5811 -0.4251 36 1 5.4070 -4.7833 -1.3772 37 1 9.1816 -7.3936 -0.5464 38 1 4.4868 -9.5569 -1.8365 39 1 4.5828 -9.7618 -0.0688 40 1 6.3246 -11.0966 -2.1894 41 1 5.1894 -11.8872 -1.0697 42 1 7.4096 -12.2022 -0.1661 43 1 6.6060 -10.9755 0.8428 44 1 8.6468 -10.5038 -1.3779 45 1 8.8282 -10.1410 0.3579 46 1 4.7659 -2.3272 0.5164 47 1 3.6537 -3.3463 -0.4477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716920552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:42 Heat of formation + Delta-G solvation = -48.512444 kcal Electronic energy + Delta-G solvation = -28863.364647 eV Core-core repulsion = 24820.233167 eV Total energy + Delta-G solvation = -4043.131481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.13373 -39.96103 -38.63689 -37.55582 -35.47775 -34.34039 -33.37485 -32.37504 -30.69868 -30.33938 -29.57212 -28.53302 -26.18756 -24.51040 -23.35978 -22.78437 -22.04851 -21.13457 -20.65642 -20.17823 -19.42837 -18.31136 -17.48147 -16.92026 -16.74163 -16.25420 -15.94373 -15.30663 -15.28065 -14.97549 -14.59564 -14.34113 -14.23497 -13.95409 -13.70229 -13.54189 -13.28577 -13.17254 -13.15648 -12.98238 -12.92883 -12.62439 -12.27678 -11.84579 -11.39610 -11.36454 -11.35538 -11.20538 -11.03614 -10.92292 -10.82805 -10.48939 -10.23331 -9.98538 -9.83203 -9.53474 -9.35358 -9.16082 -8.62184 -8.41559 -7.09985 -6.33374 -3.17976 0.79176 1.99722 2.27334 2.91824 2.98136 3.43984 3.51937 3.69952 4.12727 4.23670 4.27374 4.34524 4.41774 4.54349 4.60760 4.64463 4.75856 4.89516 4.96462 4.98312 5.03365 5.10109 5.17627 5.28124 5.34053 5.40424 5.42062 5.47721 5.58471 5.59657 5.64087 5.67100 5.71906 5.80187 5.80998 5.99349 6.09958 6.12694 6.13627 6.28415 6.34076 6.56497 6.60193 6.80899 7.20139 7.66061 7.77455 7.86786 8.33293 9.03235 9.58690 10.24969 11.15262 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.002499 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.855282 B =11201.839975 C =12166.485577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.019 4.019 3 Si 1.069 2.931 4 H -0.292 1.292 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.331 4.331 8 H 0.075 0.925 9 N -0.602 5.602 10 C 0.120 3.880 11 C -0.112 4.112 12 C 0.102 3.898 13 O -0.535 6.535 14 C 0.103 3.897 15 N -0.716 5.716 16 C 0.606 3.394 17 O -0.521 6.521 18 C -0.083 4.083 19 C -0.108 4.108 20 C -0.193 4.193 21 C 0.022 3.978 22 O -0.155 6.155 23 C -0.043 4.043 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.050 4.050 27 C 0.115 3.885 28 H 0.262 0.738 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.366 0.634 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.404 0.596 37 H 0.160 0.840 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.031 0.969 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.332 -22.561 -3.118 28.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.903 3.097 4 H -0.220 1.220 5 H -0.227 1.227 6 H -0.221 1.221 7 C -0.458 4.458 8 H 0.093 0.907 9 N -0.329 5.329 10 C -0.005 4.005 11 C -0.150 4.150 12 C 0.060 3.940 13 O -0.339 6.339 14 C -0.021 4.021 15 N -0.368 5.368 16 C 0.393 3.607 17 O -0.399 6.399 18 C -0.135 4.135 19 C -0.128 4.128 20 C -0.195 4.195 21 C -0.031 4.031 22 O -0.051 6.051 23 C -0.080 4.080 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.087 4.087 27 C -0.011 4.011 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.213 0.787 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.239 0.761 37 H 0.178 0.822 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.049 0.951 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.531 -19.749 -3.274 25.961 hybrid contribution -0.079 -2.384 0.345 2.410 sum 16.452 -22.133 -2.929 27.733 Atomic orbital electron populations 1.70925 1.05824 1.29962 1.49036 1.25799 0.96302 1.00883 0.99005 0.83713 0.73731 0.75964 0.76304 1.21998 1.22740 1.22117 1.19979 0.89111 0.97162 1.39553 0.90732 1.44653 1.14199 1.14021 1.60051 1.21641 0.91336 0.92360 0.95157 1.22565 0.98761 0.91261 1.02458 1.22721 0.89789 0.94688 0.86814 1.86629 1.83062 1.25613 1.38644 1.22102 0.98311 0.78370 1.03301 1.45847 1.10751 1.07821 1.72346 1.16479 0.84759 0.82480 0.77018 1.90884 1.23771 1.74185 1.51065 1.22045 0.83809 0.93063 1.14549 1.21584 1.00386 0.90634 1.00220 1.20163 0.93249 0.96302 1.09737 1.22759 0.96308 0.81981 1.02056 1.83901 1.33053 1.18524 1.69603 1.20371 0.94645 0.88783 1.04163 1.21599 0.97988 0.95533 1.00243 1.21661 0.95795 0.99274 0.99376 1.20103 0.97297 0.89241 1.02042 1.22210 0.91646 0.93178 0.94098 0.92727 0.93645 0.95309 0.89977 0.89854 0.78727 0.90127 0.89765 0.76097 0.82248 0.89172 0.88926 0.91060 0.90189 0.90938 0.91345 0.90593 0.90488 0.95146 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.00 13.70 55.49 0.76 -28.24 16 2 C -0.02 -0.57 5.43 -17.43 -0.09 -0.66 16 3 Si 1.07 27.26 24.66 -169.99 -4.19 23.06 16 4 H -0.29 -7.04 6.76 56.52 0.38 -6.66 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 6 H -0.29 -7.11 6.71 56.52 0.38 -6.73 16 7 C -0.33 -9.60 10.43 -15.06 -0.16 -9.76 16 8 H 0.07 2.27 8.06 -52.48 -0.42 1.84 16 9 N -0.60 -14.95 3.29 -169.93 -0.56 -15.51 16 10 C 0.12 2.68 4.94 -3.06 -0.02 2.66 16 11 C -0.11 -1.90 6.15 -24.89 -0.15 -2.05 16 12 C 0.10 1.64 0.97 -88.35 -0.09 1.56 16 13 O -0.54 -8.74 13.21 -35.23 -0.47 -9.21 16 14 C 0.10 1.39 4.89 -4.04 -0.02 1.37 16 15 N -0.72 -9.00 5.20 -61.62 -0.32 -9.32 16 16 C 0.61 8.38 7.79 -12.86 -0.10 8.28 16 17 O -0.52 -8.55 16.86 5.19 0.09 -8.46 16 18 C -0.08 -1.03 7.14 -36.71 -0.26 -1.29 16 19 C -0.11 -1.20 10.60 -39.58 -0.42 -1.62 16 20 C -0.19 -1.83 5.93 -105.05 -0.62 -2.46 16 21 C 0.02 0.21 7.22 -35.12 -0.25 -0.04 16 22 O -0.16 -1.80 10.39 5.57 0.06 -1.74 16 23 C -0.04 -0.27 6.30 -27.57 -0.17 -0.44 16 24 C -0.12 -0.54 5.89 -26.50 -0.16 -0.70 16 25 C -0.12 -0.61 5.91 -26.46 -0.16 -0.77 16 26 C -0.05 -0.32 6.28 -27.67 -0.17 -0.50 16 27 C 0.12 2.27 6.23 -2.40 -0.01 2.25 16 28 H 0.26 8.19 8.73 -40.82 -0.36 7.84 16 29 H 0.05 1.09 7.83 -51.93 -0.41 0.69 16 30 H 0.03 0.67 3.77 -51.93 -0.20 0.48 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 33 H 0.37 4.63 7.69 45.56 0.35 4.98 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.40 4.54 7.03 -40.82 -0.29 4.25 16 37 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.03 0.60 7.99 -51.93 -0.41 0.18 16 47 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 374.75 15.07 5.65 5.65 Total: -1.00 -35.65 374.75 -8.32 -43.97 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.48 Total: 3.97 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.86 Total: -4.17 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.12 Total: -53.07 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.32 Total: -19.41 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -4.19 Total: 23.06 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.65 -8.32 -43.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716920552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.542 kcal (2) G-P(sol) polarization free energy of solvation -35.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds