Wall clock time and date at job start Tue Mar 31 2020 21:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00430 * 2 1 4 4 H 1.48502 * 109.47022 * 265.20181 * 3 2 1 5 5 H 1.48492 * 109.46735 * 25.20192 * 3 2 1 6 6 H 1.48498 * 109.47060 * 145.20133 * 3 2 1 7 7 C 1.38815 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99530 * 333.00194 * 7 2 1 9 9 N 1.36933 * 120.00279 * 152.99416 * 7 2 1 10 10 C 1.47018 * 125.64791 * 349.70283 * 9 7 2 11 11 C 1.54326 * 107.27077 * 181.02164 * 10 9 7 12 12 C 1.55157 * 102.94369 * 22.19167 * 11 10 9 13 13 O 1.42899 * 111.00207 * 82.57088 * 12 11 10 14 14 C 1.53003 * 111.00339 * 206.38768 * 12 11 10 15 15 N 1.46503 * 109.46567 * 180.02562 * 14 12 11 16 16 C 1.34777 * 119.99504 * 180.02562 * 15 14 12 17 17 O 1.21696 * 120.00170 * 359.97438 * 16 15 14 18 18 C 1.46664 * 119.99822 * 180.02562 * 16 15 14 19 19 C 1.36772 * 125.95567 * 180.02562 * 18 16 15 20 20 C 1.39655 * 106.53025 * 179.97438 * 19 18 16 21 21 C 1.35574 * 107.41650 * 0.02973 * 20 19 18 22 22 O 1.33491 * 108.60669 * 359.68672 * 21 20 19 23 23 C 1.50991 * 123.79090 * 179.88750 * 21 20 19 24 24 C 1.53331 * 108.42213 * 343.25146 * 23 21 20 25 25 C 1.53108 * 109.54943 * 50.17274 * 24 23 21 26 26 C 1.50694 * 128.11984 * 180.02562 * 20 19 18 27 27 C 1.47432 * 125.64697 * 169.39206 * 9 7 2 28 28 H 0.96998 * 120.00029 * 185.04640 * 1 2 3 29 29 H 1.08994 * 109.88300 * 300.43777 * 10 9 7 30 30 H 1.09004 * 109.88225 * 61.60548 * 10 9 7 31 31 H 1.08996 * 110.72115 * 140.55445 * 11 10 9 32 32 H 1.09000 * 110.71762 * 263.65246 * 11 10 9 33 33 H 0.96704 * 113.99845 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.47044 * 299.99961 * 14 12 11 35 35 H 1.08998 * 109.47235 * 60.00148 * 14 12 11 36 36 H 0.96993 * 120.00799 * 359.97438 * 15 14 12 37 37 H 1.07997 * 126.73299 * 359.97093 * 19 18 16 38 38 H 1.09003 * 109.67962 * 223.52132 * 23 21 20 39 39 H 1.09000 * 109.70877 * 103.00194 * 23 21 20 40 40 H 1.08997 * 109.45691 * 290.15209 * 24 23 21 41 41 H 1.08994 * 109.44087 * 170.18896 * 24 23 21 42 42 H 1.09005 * 109.47378 * 169.78678 * 25 24 23 43 43 H 1.08993 * 109.48998 * 49.76716 * 25 24 23 44 44 H 1.08998 * 109.68894 * 283.26944 * 26 20 19 45 45 H 1.09000 * 109.68943 * 43.82964 * 26 20 19 46 46 H 1.08998 * 110.36548 * 274.74830 * 27 9 7 47 47 H 1.08998 * 110.36594 * 37.07039 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5993 1.9878 -1.3952 5 1 1.4008 2.6797 0.5961 6 1 3.4934 1.4714 0.7990 7 6 2.0103 -1.2022 0.0005 8 1 1.5584 -2.0863 0.4256 9 7 3.2676 -1.2671 -0.5379 10 6 3.9149 -0.2131 -1.3325 11 6 5.3064 -0.7387 -1.7439 12 6 5.1422 -2.2778 -1.6365 13 8 4.5332 -2.8113 -2.8140 14 6 6.4866 -2.9550 -1.3629 15 7 6.2931 -4.4041 -1.2686 16 6 7.3464 -5.2104 -1.0299 17 8 8.4582 -4.7347 -0.8931 18 6 7.1529 -6.6612 -0.9360 19 6 8.1303 -7.5880 -0.6986 20 6 7.5019 -8.8352 -0.6918 21 6 6.1825 -8.6261 -0.9229 22 8 5.9772 -7.3145 -1.0627 23 6 5.1569 -9.7320 -0.9949 24 6 5.8927 -11.0632 -1.1892 25 6 7.0077 -11.1891 -0.1476 26 6 8.1253 -10.1898 -0.4738 27 6 4.1988 -2.4031 -0.4114 28 1 -0.4850 -0.8368 0.0739 29 1 3.3209 -0.0014 -2.2215 30 1 4.0226 0.6904 -0.7322 31 1 5.5419 -0.4465 -2.7672 32 1 6.0726 -0.3810 -1.0561 33 1 4.4104 -3.7703 -2.7933 34 1 7.1774 -2.7331 -2.1763 35 1 6.8976 -2.5811 -0.4251 36 1 5.4070 -4.7833 -1.3772 37 1 9.1816 -7.3936 -0.5464 38 1 4.4868 -9.5569 -1.8365 39 1 4.5828 -9.7618 -0.0688 40 1 6.3246 -11.0966 -2.1894 41 1 5.1894 -11.8872 -1.0697 42 1 7.4096 -12.2022 -0.1661 43 1 6.6060 -10.9755 0.8428 44 1 8.6468 -10.5038 -1.3779 45 1 8.8282 -10.1410 0.3579 46 1 4.7659 -2.3272 0.5164 47 1 3.6537 -3.3463 -0.4477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716920552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:41 Heat of formation + Delta-G solvation = -75.573894 kcal Electronic energy + Delta-G solvation = -28864.538120 eV Core-core repulsion = 24820.233167 eV Total energy + Delta-G solvation = -4044.304953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.93398 -41.14322 -39.97451 -38.08802 -37.06332 -35.48772 -34.40828 -34.11370 -31.91525 -31.18321 -30.72351 -29.82982 -27.63323 -25.64387 -24.51015 -23.62045 -22.85300 -22.67312 -21.79665 -21.54866 -20.27642 -19.54764 -19.17351 -17.99452 -17.68880 -17.28341 -17.19437 -16.67092 -16.34862 -16.20661 -15.64742 -15.53484 -15.28862 -15.15002 -14.80202 -14.70872 -14.52470 -14.49193 -14.08492 -13.79257 -13.65627 -13.53072 -13.44854 -13.14838 -13.10288 -12.93342 -12.70694 -12.26109 -11.98194 -11.79464 -11.76297 -11.66318 -11.56176 -11.47785 -11.27565 -11.00709 -10.77910 -10.58713 -10.40890 -9.39937 -9.19158 -8.66972 -5.44707 -0.10153 1.22389 1.38749 1.44008 1.50123 1.69315 1.95246 1.98785 2.50491 2.95112 3.02362 3.25728 3.37572 3.50980 3.65281 3.68807 3.73986 3.75547 3.97682 4.09528 4.14548 4.26760 4.32649 4.36289 4.45528 4.52431 4.57370 4.65498 4.66725 4.67692 4.78156 4.83869 4.85867 4.90199 4.94812 5.00609 5.05704 5.10039 5.16099 5.17791 5.20503 5.42872 5.49170 5.53327 5.77914 6.07446 6.21418 6.62035 6.79584 6.82811 7.44689 8.09142 8.81850 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.002499 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.855282 B =11201.839975 C =12166.485577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.077 4.077 3 Si 1.110 2.890 4 H -0.272 1.272 5 H -0.305 1.305 6 H -0.272 1.272 7 C -0.321 4.321 8 H 0.044 0.956 9 N -0.624 5.624 10 C 0.109 3.891 11 C -0.106 4.106 12 C 0.120 3.880 13 O -0.549 6.549 14 C 0.115 3.885 15 N -0.710 5.710 16 C 0.608 3.392 17 O -0.552 6.552 18 C -0.111 4.111 19 C -0.109 4.109 20 C -0.201 4.201 21 C 0.020 3.980 22 O -0.166 6.166 23 C -0.046 4.046 24 C -0.113 4.113 25 C -0.122 4.122 26 C -0.051 4.051 27 C 0.109 3.891 28 H 0.248 0.752 29 H 0.023 0.977 30 H 0.029 0.971 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.381 0.619 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.410 0.590 37 H 0.164 0.836 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.657 -23.937 -3.710 30.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.272 4.272 3 Si 0.938 3.062 4 H -0.198 1.198 5 H -0.233 1.233 6 H -0.198 1.198 7 C -0.450 4.450 8 H 0.062 0.938 9 N -0.351 5.351 10 C -0.015 4.015 11 C -0.144 4.144 12 C 0.078 3.922 13 O -0.356 6.356 14 C -0.009 4.009 15 N -0.362 5.362 16 C 0.396 3.604 17 O -0.433 6.433 18 C -0.163 4.163 19 C -0.130 4.130 20 C -0.202 4.202 21 C -0.033 4.033 22 O -0.062 6.062 23 C -0.082 4.082 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.088 4.088 27 C -0.017 4.017 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.230 0.770 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.182 0.818 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.057 0.943 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 18.882 -21.175 -3.882 28.636 hybrid contribution -0.843 -2.164 0.539 2.384 sum 18.039 -23.339 -3.343 29.687 Atomic orbital electron populations 1.71037 1.07027 1.29166 1.52337 1.27061 0.96346 1.04443 0.99316 0.83201 0.73244 0.72128 0.77672 1.19800 1.23346 1.19847 1.19894 0.91079 0.95936 1.38077 0.93800 1.44739 1.13857 1.16367 1.60184 1.21790 0.93879 0.92081 0.93782 1.22628 0.96052 0.91238 1.04452 1.22482 0.89887 0.94868 0.84977 1.86600 1.83266 1.27215 1.38536 1.21939 0.96515 0.78486 1.03947 1.45763 1.10910 1.07511 1.71978 1.16584 0.84368 0.83061 0.76359 1.90857 1.24787 1.74919 1.52709 1.21855 0.84613 0.92711 1.17075 1.21849 1.00572 0.91324 0.99232 1.20546 0.93266 0.97055 1.09322 1.23555 0.97488 0.81755 1.00528 1.83883 1.32827 1.19513 1.69975 1.20627 0.94304 0.88351 1.04962 1.21634 0.98218 0.95041 1.00142 1.21681 0.95357 0.99738 0.99185 1.20231 0.97933 0.87936 1.02690 1.22445 0.91583 0.91266 0.96391 0.94235 0.95909 0.95357 0.87835 0.86858 0.76991 0.88924 0.89382 0.75405 0.81804 0.88344 0.88026 0.91044 0.88115 0.89056 0.91709 0.89702 0.90012 0.94271 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.21 13.70 21.65 0.30 -61.91 16 2 C -0.08 -4.72 5.43 84.86 0.46 -4.25 16 3 Si 1.11 55.00 24.66 68.60 1.69 56.70 16 4 H -0.27 -12.45 6.76 99.48 0.67 -11.77 16 5 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 6 H -0.27 -12.38 6.71 99.48 0.67 -11.72 16 7 C -0.32 -19.05 10.43 84.03 0.88 -18.17 16 8 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 9 N -0.62 -30.72 3.29 -691.53 -2.27 -32.99 16 10 C 0.11 4.69 4.94 86.73 0.43 5.11 16 11 C -0.11 -3.23 6.15 31.78 0.20 -3.04 16 12 C 0.12 3.57 0.97 -9.32 -0.01 3.56 16 13 O -0.55 -16.87 13.21 -148.98 -1.97 -18.83 16 14 C 0.11 2.80 4.89 86.38 0.42 3.23 16 15 N -0.71 -16.84 5.20 -467.08 -2.43 -19.27 16 16 C 0.61 16.37 7.79 86.44 0.67 17.04 16 17 O -0.55 -17.72 16.86 -4.34 -0.07 -17.79 16 18 C -0.11 -2.73 7.14 24.13 0.17 -2.55 16 19 C -0.11 -2.38 10.60 22.27 0.24 -2.14 16 20 C -0.20 -3.56 5.93 -20.14 -0.12 -3.68 16 21 C 0.02 0.35 7.22 25.16 0.18 0.54 16 22 O -0.17 -3.74 10.39 -2.99 -0.03 -3.77 16 23 C -0.05 -0.48 6.30 30.05 0.19 -0.29 16 24 C -0.11 -0.75 5.89 30.74 0.18 -0.57 16 25 C -0.12 -0.89 5.91 30.77 0.18 -0.71 16 26 C -0.05 -0.56 6.28 29.99 0.19 -0.37 16 27 C 0.11 4.14 6.23 86.93 0.54 4.69 16 28 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 29 H 0.02 1.07 7.83 -2.39 -0.02 1.06 16 30 H 0.03 1.25 3.77 -2.38 -0.01 1.24 16 31 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.11 2.81 8.04 -2.39 -0.02 2.79 16 33 H 0.38 9.00 7.69 -74.05 -0.57 8.43 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 2.15 8.07 -2.39 -0.02 2.13 16 36 H 0.41 8.75 7.03 -92.71 -0.65 8.09 16 37 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.50 8.11 -2.39 -0.02 0.48 16 41 H 0.10 0.29 8.14 -2.39 -0.02 0.28 16 42 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 43 H 0.06 0.54 8.11 -2.39 -0.02 0.52 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.04 1.46 7.99 -2.39 -0.02 1.44 16 47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -79.17 374.75 -0.31 -79.48 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.33 Total: 19.99 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 4.80 Total: -1.60 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -4.40 Total: -114.17 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -2.07 Total: -40.40 kcal Atomic # 14 Polarization: 55.00 SS G_CDS: 1.69 Total: 56.70 kcal Total: -79.17 -0.31 -79.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716920552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.907 kcal (2) G-P(sol) polarization free energy of solvation -79.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds