Wall clock time and date at job start Tue Mar 31 2020 21:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00407 * 2 1 4 4 H 1.48496 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47288 * 300.00794 * 3 2 1 6 6 H 1.48507 * 109.46766 * 60.00357 * 3 2 1 7 7 C 1.38815 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99797 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47056 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47049 * 179.97438 * 11 10 9 13 13 C 1.46501 * 120.00053 * 269.99750 * 12 11 10 14 14 C 1.52998 * 109.47597 * 288.96635 * 13 12 11 15 15 O 1.42897 * 109.47098 * 64.99755 * 14 13 12 16 16 C 1.34778 * 119.99903 * 90.00300 * 12 11 10 17 17 O 1.21553 * 119.99814 * 359.27866 * 16 12 11 18 18 C 1.47851 * 119.99917 * 179.55383 * 16 12 11 19 19 C 1.39458 * 120.01076 * 327.23755 * 18 16 12 20 20 C 1.37945 * 119.69310 * 179.79238 * 19 18 16 21 21 C 1.38206 * 120.05574 * 0.57835 * 20 19 18 22 22 C 1.38748 * 120.61617 * 359.77786 * 21 20 19 23 23 C 1.37670 * 119.86311 * 359.76384 * 22 21 20 24 24 C 1.50719 * 121.42323 * 180.63741 * 23 22 21 25 25 C 1.52969 * 109.77965 * 342.81262 * 24 23 22 26 26 O 1.43205 * 108.48173 * 49.12387 * 25 24 23 27 27 C 1.42714 * 113.13986 * 289.45538 * 26 25 24 28 28 H 0.97001 * 119.99547 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99878 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.46920 * 59.99676 * 10 9 7 31 31 H 1.08999 * 109.46996 * 299.99322 * 10 9 7 32 32 H 1.09003 * 109.46915 * 59.99986 * 11 10 9 33 33 H 1.08994 * 109.47292 * 300.00350 * 11 10 9 34 34 H 1.09002 * 109.47110 * 48.96778 * 13 12 11 35 35 H 1.09005 * 109.46951 * 168.96494 * 13 12 11 36 36 H 1.08994 * 109.47268 * 184.99978 * 14 13 12 37 37 H 1.09004 * 109.46568 * 304.99848 * 14 13 12 38 38 H 0.96697 * 114.00120 * 180.02562 * 15 14 13 39 39 H 1.07997 * 120.15347 * 0.03128 * 19 18 16 40 40 H 1.07999 * 119.97256 * 180.32498 * 20 19 18 41 41 H 1.08004 * 119.69534 * 179.75207 * 21 20 19 42 42 H 1.08999 * 109.41870 * 102.90538 * 24 23 22 43 43 H 1.08995 * 109.42357 * 222.71545 * 24 23 22 44 44 H 1.09008 * 109.63475 * 289.42506 * 25 24 23 45 45 H 1.09003 * 109.80260 * 168.92292 * 25 24 23 46 46 H 1.09000 * 109.33539 * 291.62759 * 27 26 25 47 47 H 1.08994 * 109.34229 * 172.11184 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 6 1.0636 -4.8197 -0.0022 12 7 1.7960 -6.0884 -0.0029 13 6 2.1623 -6.7222 -1.2719 14 6 0.9055 -7.2732 -1.9484 15 8 0.0415 -6.1912 -2.3016 16 6 2.1329 -6.6727 1.1641 17 8 1.8404 -6.1403 2.2169 18 6 2.8634 -7.9581 1.1635 19 6 2.6366 -8.8888 0.1500 20 6 3.3250 -10.0842 0.1535 21 6 4.2260 -10.3612 1.1642 22 6 4.4520 -9.4438 2.1803 23 6 3.7780 -8.2434 2.1825 24 6 4.0070 -7.2157 3.2610 25 6 4.6917 -7.8697 4.4623 26 8 5.8129 -8.6252 3.9900 27 6 5.4355 -9.7959 3.2663 28 1 -0.4849 0.8401 0.0004 29 1 0.3554 -2.3880 -0.0016 30 1 2.6839 -3.7150 0.8888 31 1 2.6851 -3.7143 -0.8912 32 1 0.4373 -4.7617 -0.8925 33 1 0.4366 -4.7622 0.8874 34 1 2.6324 -5.9856 -1.9235 35 1 2.8602 -7.5378 -1.0826 36 1 1.1873 -7.8215 -2.8472 37 1 0.3873 -7.9427 -1.2618 38 1 -0.7774 -6.4673 -2.7356 39 1 1.9281 -8.6731 -0.6360 40 1 3.1567 -10.8060 -0.6320 41 1 4.7588 -11.3007 1.1634 42 1 4.6403 -6.4180 2.8728 43 1 3.0497 -6.7979 3.5726 44 1 3.9897 -8.5331 4.9677 45 1 5.0337 -7.1015 5.1559 46 1 4.9776 -10.5108 3.9499 47 1 6.3220 -10.2450 2.8187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717054238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:03 Heat of formation + Delta-G solvation = -61.517009 kcal Electronic energy + Delta-G solvation = -29482.804082 eV Core-core repulsion = 25439.108681 eV Total energy + Delta-G solvation = -4043.695401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14443 -39.48132 -37.63551 -37.39077 -35.55636 -34.41145 -33.08509 -32.40403 -31.22887 -29.92046 -29.60664 -27.44079 -25.85954 -24.47606 -23.86509 -23.35041 -22.66733 -21.33092 -20.49479 -19.35069 -17.86186 -17.39192 -17.12594 -16.83212 -16.44459 -16.06309 -15.91992 -15.49696 -15.38627 -14.80189 -14.51690 -14.28774 -14.01350 -13.88170 -13.55417 -13.52283 -13.22425 -13.09945 -12.96412 -12.73358 -12.55941 -12.48642 -12.02848 -11.86937 -11.77687 -11.25963 -11.16166 -10.88286 -10.84760 -10.81821 -10.58840 -10.13752 -10.03182 -9.99897 -9.68441 -9.45740 -9.04522 -8.86096 -8.79387 -8.45389 -6.83947 -5.68683 -2.97018 0.64361 0.97652 2.71749 3.01378 3.48192 3.48897 3.54209 3.56849 3.65067 3.99616 4.28721 4.30675 4.43182 4.57845 4.67887 4.70575 4.83098 4.91935 4.95651 4.99248 5.03139 5.07214 5.16667 5.22294 5.26029 5.44364 5.49509 5.63200 5.65170 5.67283 5.73856 5.87354 5.97498 5.99164 6.01311 6.04644 6.16155 6.32406 6.36799 6.56022 6.63782 6.85055 6.86139 7.03748 7.44439 7.58431 7.77876 8.25416 8.50118 9.60931 10.18604 10.54112 11.54474 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.003173 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.256621 B = 8821.078982 C =10562.884550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.104 3.896 12 N -0.589 5.589 13 C 0.079 3.921 14 C 0.056 3.944 15 O -0.556 6.556 16 C 0.552 3.448 17 O -0.524 6.524 18 C -0.126 4.126 19 C -0.105 4.105 20 C -0.132 4.132 21 C -0.091 4.091 22 C -0.131 4.131 23 C -0.012 4.012 24 C -0.139 4.139 25 C 0.060 3.940 26 O -0.377 6.377 27 C 0.104 3.896 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.019 0.981 31 H 0.016 0.984 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.377 0.623 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.125 0.875 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.065 0.935 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.377 -28.117 -0.633 28.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.016 3.984 11 C -0.018 4.018 12 N -0.321 5.321 13 C -0.044 4.044 14 C -0.023 4.023 15 O -0.362 6.362 16 C 0.340 3.660 17 O -0.401 6.401 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.150 4.150 21 C -0.109 4.109 22 C -0.132 4.132 23 C -0.013 4.013 24 C -0.175 4.175 25 C -0.016 4.016 26 O -0.295 6.295 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.225 0.775 39 H 0.160 0.840 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.106 0.894 43 H 0.143 0.857 44 H 0.074 0.926 45 H 0.120 0.880 46 H 0.083 0.917 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.028 -27.276 0.226 28.168 hybrid contribution -0.584 0.438 -0.610 0.951 sum 6.444 -26.838 -0.384 27.604 Atomic orbital electron populations 1.69677 1.05073 1.25423 1.58076 1.24735 0.95551 0.97628 1.03207 0.86101 0.78776 0.84114 0.77140 1.20588 1.21903 1.21858 1.19263 0.91012 0.84041 1.42227 0.91236 1.42195 1.05865 0.99750 1.89499 1.20871 0.93934 0.85862 0.97717 1.21936 0.94728 0.80706 1.04387 1.47729 1.56229 1.23370 1.04731 1.22391 0.96144 1.00112 0.85800 1.22665 0.91994 0.89627 0.98003 1.86625 1.34538 1.33313 1.81705 1.18335 0.79335 0.84275 0.84014 1.90708 1.54515 1.64548 1.30324 1.19910 1.00100 0.95869 0.97071 1.21834 0.99695 0.93521 0.97263 1.21020 0.97671 0.96943 0.99316 1.21137 0.97580 0.98711 0.93471 1.20243 0.99753 0.94779 0.98395 1.19523 0.92899 0.94235 0.94600 1.21575 1.04847 0.96938 0.94160 1.22719 0.88299 0.95166 0.95452 1.88072 1.31508 1.37770 1.72167 1.21391 0.97038 0.87924 0.90932 0.93624 0.78251 0.96322 0.96654 0.87846 0.90218 0.89560 0.86762 0.92457 0.93353 0.77517 0.83997 0.85203 0.85473 0.89416 0.85693 0.92640 0.87953 0.91711 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.29 13.06 55.49 0.72 -28.57 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 23.30 29.55 -169.99 -5.02 18.28 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 7 C -0.23 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.73 -19.95 5.60 -59.91 -0.34 -20.28 16 10 C 0.14 3.28 6.58 -4.04 -0.03 3.26 16 11 C 0.10 1.95 5.38 -4.04 -0.02 1.93 16 12 N -0.59 -8.99 2.54 -174.80 -0.44 -9.44 16 13 C 0.08 0.89 5.43 -4.04 -0.02 0.86 16 14 C 0.06 0.50 6.40 37.16 0.24 0.73 16 15 O -0.56 -6.22 11.03 -35.23 -0.39 -6.60 16 16 C 0.55 8.87 7.16 -12.33 -0.09 8.78 16 17 O -0.52 -10.16 13.50 5.32 0.07 -10.09 16 18 C -0.13 -1.63 5.44 -104.90 -0.57 -2.20 16 19 C -0.11 -1.00 7.36 -39.23 -0.29 -1.29 16 20 C -0.13 -1.00 10.03 -39.70 -0.40 -1.40 16 21 C -0.09 -0.71 9.66 -39.40 -0.38 -1.10 16 22 C -0.13 -1.33 5.80 -104.65 -0.61 -1.93 16 23 C -0.01 -0.15 5.80 -104.21 -0.60 -0.75 16 24 C -0.14 -1.83 5.16 -27.89 -0.14 -1.97 16 25 C 0.06 0.65 6.85 37.14 0.25 0.90 16 26 O -0.38 -4.28 10.80 -35.23 -0.38 -4.66 16 27 C 0.10 0.90 6.66 36.00 0.24 1.14 16 28 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.38 10.91 7.67 -40.82 -0.31 10.60 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 1.91 5.51 -51.93 -0.29 1.62 16 33 H 0.08 1.64 7.43 -51.93 -0.39 1.25 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.11 1.06 4.01 -51.93 -0.21 0.85 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.05 0.39 7.13 -51.93 -0.37 0.02 16 38 H 0.38 2.52 9.12 45.56 0.42 2.93 16 39 H 0.14 1.11 3.52 -52.49 -0.18 0.93 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.13 1.89 5.55 -51.93 -0.29 1.60 16 44 H 0.06 0.53 8.07 -51.92 -0.42 0.11 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -37.10 372.00 -8.65 -45.75 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.81 Total: 10.71 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.67 Total: -0.71 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.05 Total: -58.29 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.70 Total: -21.35 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.10 -8.65 -45.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717054238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.770 kcal (2) G-P(sol) polarization free energy of solvation -37.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds