Wall clock time and date at job start Tue Mar 31 2020 21:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00407 * 2 1 4 4 H 1.48496 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47288 * 300.00794 * 3 2 1 6 6 H 1.48507 * 109.46766 * 60.00357 * 3 2 1 7 7 C 1.38815 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99797 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47056 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47049 * 179.97438 * 11 10 9 13 13 C 1.46501 * 120.00053 * 269.99750 * 12 11 10 14 14 C 1.52998 * 109.47597 * 288.96635 * 13 12 11 15 15 O 1.42897 * 109.47098 * 64.99755 * 14 13 12 16 16 C 1.34778 * 119.99903 * 90.00300 * 12 11 10 17 17 O 1.21553 * 119.99814 * 359.27866 * 16 12 11 18 18 C 1.47851 * 119.99917 * 179.55383 * 16 12 11 19 19 C 1.39458 * 120.01076 * 327.23755 * 18 16 12 20 20 C 1.37945 * 119.69310 * 179.79238 * 19 18 16 21 21 C 1.38206 * 120.05574 * 0.57835 * 20 19 18 22 22 C 1.38748 * 120.61617 * 359.77786 * 21 20 19 23 23 C 1.37670 * 119.86311 * 359.76384 * 22 21 20 24 24 C 1.50719 * 121.42323 * 180.63741 * 23 22 21 25 25 C 1.52969 * 109.77965 * 342.81262 * 24 23 22 26 26 O 1.43205 * 108.48173 * 49.12387 * 25 24 23 27 27 C 1.42714 * 113.13986 * 289.45538 * 26 25 24 28 28 H 0.97001 * 119.99547 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99878 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.46920 * 59.99676 * 10 9 7 31 31 H 1.08999 * 109.46996 * 299.99322 * 10 9 7 32 32 H 1.09003 * 109.46915 * 59.99986 * 11 10 9 33 33 H 1.08994 * 109.47292 * 300.00350 * 11 10 9 34 34 H 1.09002 * 109.47110 * 48.96778 * 13 12 11 35 35 H 1.09005 * 109.46951 * 168.96494 * 13 12 11 36 36 H 1.08994 * 109.47268 * 184.99978 * 14 13 12 37 37 H 1.09004 * 109.46568 * 304.99848 * 14 13 12 38 38 H 0.96697 * 114.00120 * 180.02562 * 15 14 13 39 39 H 1.07997 * 120.15347 * 0.03128 * 19 18 16 40 40 H 1.07999 * 119.97256 * 180.32498 * 20 19 18 41 41 H 1.08004 * 119.69534 * 179.75207 * 21 20 19 42 42 H 1.08999 * 109.41870 * 102.90538 * 24 23 22 43 43 H 1.08995 * 109.42357 * 222.71545 * 24 23 22 44 44 H 1.09008 * 109.63475 * 289.42506 * 25 24 23 45 45 H 1.09003 * 109.80260 * 168.92292 * 25 24 23 46 46 H 1.09000 * 109.33539 * 291.62759 * 27 26 25 47 47 H 1.08994 * 109.34229 * 172.11184 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 6 1.0636 -4.8197 -0.0022 12 7 1.7960 -6.0884 -0.0029 13 6 2.1623 -6.7222 -1.2719 14 6 0.9055 -7.2732 -1.9484 15 8 0.0415 -6.1912 -2.3016 16 6 2.1329 -6.6727 1.1641 17 8 1.8404 -6.1403 2.2169 18 6 2.8634 -7.9581 1.1635 19 6 2.6366 -8.8888 0.1500 20 6 3.3250 -10.0842 0.1535 21 6 4.2260 -10.3612 1.1642 22 6 4.4520 -9.4438 2.1803 23 6 3.7780 -8.2434 2.1825 24 6 4.0070 -7.2157 3.2610 25 6 4.6917 -7.8697 4.4623 26 8 5.8129 -8.6252 3.9900 27 6 5.4355 -9.7959 3.2663 28 1 -0.4849 0.8401 0.0004 29 1 0.3554 -2.3880 -0.0016 30 1 2.6839 -3.7150 0.8888 31 1 2.6851 -3.7143 -0.8912 32 1 0.4373 -4.7617 -0.8925 33 1 0.4366 -4.7622 0.8874 34 1 2.6324 -5.9856 -1.9235 35 1 2.8602 -7.5378 -1.0826 36 1 1.1873 -7.8215 -2.8472 37 1 0.3873 -7.9427 -1.2618 38 1 -0.7774 -6.4673 -2.7356 39 1 1.9281 -8.6731 -0.6360 40 1 3.1567 -10.8060 -0.6320 41 1 4.7588 -11.3007 1.1634 42 1 4.6403 -6.4180 2.8728 43 1 3.0497 -6.7979 3.5726 44 1 3.9897 -8.5331 4.9677 45 1 5.0337 -7.1015 5.1559 46 1 4.9776 -10.5108 3.9499 47 1 6.3220 -10.2450 2.8187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717054238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:02 Heat of formation + Delta-G solvation = -90.048112 kcal Electronic energy + Delta-G solvation = -29484.041284 eV Core-core repulsion = 25439.108681 eV Total energy + Delta-G solvation = -4044.932602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.09720 -40.47472 -38.51481 -38.32986 -37.05564 -36.02721 -34.00027 -33.76686 -32.74745 -30.95995 -30.65072 -29.02682 -26.59124 -26.06312 -24.88105 -24.47819 -23.88419 -22.93004 -21.29070 -20.51969 -19.23853 -18.69330 -18.30920 -17.82293 -17.33077 -17.05872 -16.91211 -16.66033 -16.40962 -16.18633 -15.80840 -15.40025 -15.30241 -15.22345 -14.96652 -14.74484 -14.55095 -14.38068 -14.05870 -13.76575 -13.54905 -13.24239 -13.13132 -13.00190 -12.88400 -12.76137 -12.64922 -12.63653 -12.20022 -12.12308 -12.03784 -11.89515 -11.66460 -11.04730 -11.00285 -10.83743 -10.54257 -9.92052 -9.68023 -9.61545 -9.10563 -8.00534 -5.32003 -0.16875 0.24128 1.43155 1.45828 1.55871 1.62848 1.86783 2.52871 2.64947 2.88238 3.25246 3.32345 3.37485 3.61997 3.64396 3.84582 3.94578 4.01164 4.03698 4.10753 4.13550 4.23021 4.29149 4.32283 4.37849 4.40433 4.46967 4.53425 4.54415 4.67100 4.73998 4.76110 4.77398 4.85852 4.91006 5.00892 5.03437 5.11354 5.28579 5.35371 5.38136 5.48100 5.49939 5.87065 6.08355 6.20528 6.31902 6.96088 7.03472 7.26357 7.96754 8.24328 9.23139 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.003173 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.256621 B = 8821.078982 C =10562.884550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.070 0.930 9 N -0.740 5.740 10 C 0.153 3.847 11 C 0.124 3.876 12 N -0.589 5.589 13 C 0.070 3.930 14 C 0.058 3.942 15 O -0.589 6.589 16 C 0.544 3.456 17 O -0.573 6.573 18 C -0.151 4.151 19 C -0.103 4.103 20 C -0.118 4.118 21 C -0.079 4.079 22 C -0.137 4.137 23 C -0.042 4.042 24 C -0.136 4.136 25 C 0.066 3.934 26 O -0.394 6.394 27 C 0.097 3.903 28 H 0.254 0.746 29 H 0.376 0.624 30 H -0.005 1.005 31 H 0.021 0.979 32 H 0.112 0.888 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.396 0.604 39 H 0.160 0.840 40 H 0.173 0.827 41 H 0.168 0.832 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.790 -31.525 -2.416 32.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.088 0.912 9 N -0.383 5.383 10 C 0.025 3.975 11 C 0.001 3.999 12 N -0.319 5.319 13 C -0.051 4.051 14 C -0.020 4.020 15 O -0.399 6.399 16 C 0.335 3.665 17 O -0.454 6.454 18 C -0.154 4.154 19 C -0.121 4.121 20 C -0.136 4.136 21 C -0.097 4.097 22 C -0.138 4.138 23 C -0.043 4.043 24 C -0.173 4.173 25 C -0.010 4.010 26 O -0.313 6.313 27 C 0.021 3.979 28 H 0.063 0.937 29 H 0.208 0.792 30 H 0.013 0.987 31 H 0.039 0.961 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.157 0.843 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.246 0.754 39 H 0.177 0.823 40 H 0.191 0.809 41 H 0.185 0.815 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.125 0.875 46 H 0.103 0.897 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.459 -30.741 -1.597 31.923 hybrid contribution -0.993 1.375 -0.081 1.698 sum 7.467 -29.365 -1.678 30.346 Atomic orbital electron populations 1.69835 1.06636 1.26326 1.58867 1.25653 0.96567 1.01252 1.02985 0.84986 0.77991 0.79154 0.77052 1.19283 1.21165 1.21665 1.19617 0.91319 0.85264 1.42314 0.91173 1.42355 1.05620 1.00839 1.89496 1.20881 0.94359 0.85817 0.96476 1.21467 0.93657 0.81340 1.03413 1.47777 1.55673 1.22056 1.06441 1.22774 0.98259 1.00372 0.83711 1.22742 0.90531 0.89084 0.99663 1.86537 1.35974 1.35114 1.82234 1.19049 0.78764 0.85387 0.83332 1.90681 1.56360 1.66258 1.32073 1.19743 1.01293 0.95049 0.99290 1.22051 1.00061 0.93574 0.96435 1.21526 0.95880 0.96354 0.99816 1.21637 0.96808 0.99289 0.91930 1.20504 0.99572 0.94069 0.99614 1.19597 0.94604 0.95425 0.94653 1.21402 1.02986 0.97065 0.95886 1.22653 0.88435 0.95534 0.94384 1.88038 1.31756 1.38850 1.72612 1.21729 0.98050 0.87242 0.90911 0.93676 0.79239 0.98714 0.96116 0.87053 0.92806 0.90706 0.84344 0.88349 0.92322 0.75354 0.82294 0.80938 0.81456 0.92210 0.88640 0.91385 0.87526 0.89727 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.00 13.06 21.65 0.28 -61.71 16 2 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.98 48.54 29.55 68.60 2.03 50.57 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 7 C -0.25 -15.53 9.99 84.03 0.84 -14.69 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.74 -42.42 5.60 -343.44 -1.92 -44.35 16 10 C 0.15 7.35 6.58 86.38 0.57 7.91 16 11 C 0.12 4.97 5.38 86.38 0.46 5.43 16 12 N -0.59 -18.72 2.54 -825.22 -2.09 -20.82 16 13 C 0.07 1.51 5.43 86.38 0.47 1.98 16 14 C 0.06 0.88 6.40 71.98 0.46 1.34 16 15 O -0.59 -12.50 11.03 -148.98 -1.64 -14.14 16 16 C 0.54 18.64 7.16 86.79 0.62 19.26 16 17 O -0.57 -24.59 13.50 -3.88 -0.05 -24.64 16 18 C -0.15 -3.89 5.44 -20.04 -0.11 -4.00 16 19 C -0.10 -1.67 7.36 22.49 0.17 -1.51 16 20 C -0.12 -1.20 10.03 22.19 0.22 -0.97 16 21 C -0.08 -0.86 9.66 22.38 0.22 -0.64 16 22 C -0.14 -2.46 5.80 -19.88 -0.12 -2.57 16 23 C -0.04 -1.07 5.80 -19.60 -0.11 -1.18 16 24 C -0.14 -3.97 5.16 29.84 0.15 -3.81 16 25 C 0.07 1.49 6.85 71.97 0.49 1.99 16 26 O -0.39 -8.68 10.80 -148.98 -1.61 -10.28 16 27 C 0.10 1.42 6.66 71.23 0.47 1.90 16 28 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.38 22.44 7.67 -92.71 -0.71 21.73 16 30 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 4.29 5.51 -2.39 -0.01 4.27 16 33 H 0.05 2.41 7.43 -2.39 -0.02 2.39 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.14 2.27 4.01 -2.38 -0.01 2.26 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.79 7.13 -2.39 -0.02 0.77 16 38 H 0.40 4.70 9.12 -74.06 -0.68 4.02 16 39 H 0.16 1.94 3.52 -2.91 -0.01 1.93 16 40 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 41 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.10 3.31 5.55 -2.39 -0.01 3.30 16 44 H 0.07 1.33 8.07 -2.38 -0.02 1.31 16 45 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -86.07 372.00 -0.09 -86.17 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: -0.36 Total: 32.71 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 5.28 Total: 6.50 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -3.73 Total: -126.88 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -3.30 Total: -49.06 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.57 kcal Total: -86.07 -0.09 -86.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717054238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.879 kcal (2) G-P(sol) polarization free energy of solvation -86.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds