Wall clock time and date at job start Tue Mar 31 2020 22:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48505 * 109.47213 * 240.00106 * 3 2 1 5 5 H 1.48499 * 109.46964 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47248 * 120.00047 * 3 2 1 7 7 C 1.38817 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99592 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00285 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47300 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47300 * 179.97438 * 11 10 9 13 13 C 1.46500 * 120.00210 * 270.00080 * 12 11 10 14 14 C 1.52998 * 109.47317 * 269.99777 * 13 12 11 15 15 O 1.42897 * 109.46789 * 64.99706 * 14 13 12 16 16 C 1.34781 * 120.00051 * 89.99781 * 12 11 10 17 17 O 1.21285 * 119.99707 * 0.02562 * 16 12 11 18 18 C 1.50691 * 119.99936 * 180.02562 * 16 12 11 19 19 C 1.53004 * 109.46938 * 180.02562 * 18 16 12 20 20 H 1.08998 * 110.18826 * 53.26611 * 19 18 16 21 21 O 1.43940 * 110.15457 * 291.52426 * 19 18 16 22 22 C 1.43946 * 104.94725 * 212.42977 * 21 19 18 23 23 C 1.51082 * 105.95883 * 28.44732 * 22 21 19 24 24 C 1.37968 * 132.68941 * 162.29837 * 23 22 21 25 25 C 1.38292 * 119.91531 * 180.30756 * 24 23 22 26 26 C 1.38261 * 120.04515 * 359.35753 * 25 24 23 27 27 C 1.38296 * 120.03695 * 0.68069 * 26 25 24 28 28 C 1.37970 * 119.91964 * 359.63267 * 27 26 25 29 29 H 0.96998 * 119.99614 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99665 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46952 * 60.00092 * 10 9 7 32 32 H 1.09006 * 109.46793 * 300.00472 * 10 9 7 33 33 H 1.08997 * 109.47115 * 60.00104 * 11 10 9 34 34 H 1.08997 * 109.47320 * 299.99997 * 11 10 9 35 35 H 1.09001 * 109.46739 * 29.99968 * 13 12 11 36 36 H 1.09006 * 109.46927 * 149.99326 * 13 12 11 37 37 H 1.08998 * 109.47130 * 184.99761 * 14 13 12 38 38 H 1.09000 * 109.46884 * 304.99789 * 14 13 12 39 39 H 0.96698 * 114.00043 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.47843 * 60.00343 * 18 16 12 41 41 H 1.09000 * 109.47231 * 299.99726 * 18 16 12 42 42 H 1.09010 * 110.15440 * 269.32070 * 22 21 19 43 43 H 1.09002 * 110.15237 * 147.57035 * 22 21 19 44 44 H 1.08002 * 120.03910 * 0.02562 * 24 23 22 45 45 H 1.08000 * 119.97951 * 179.70266 * 25 24 23 46 46 H 1.08003 * 119.98527 * 180.31525 * 26 25 24 47 47 H 1.08002 * 120.03967 * 179.66324 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 7 1.7961 -6.0885 -0.0038 13 6 2.1614 -6.7217 -1.2734 14 6 1.0394 -7.6633 -1.7152 15 8 -0.1373 -6.9029 -1.9967 16 6 2.1339 -6.6732 1.1626 17 8 1.8311 -6.1492 2.2137 18 6 2.8878 -7.9780 1.1608 19 6 3.1432 -8.4214 2.6027 20 1 2.2075 -8.4414 3.1614 21 8 4.0806 -7.5318 3.2365 22 6 4.8146 -8.3602 4.1568 23 6 4.8039 -9.7499 3.5641 24 6 5.5727 -10.8718 3.7962 25 6 5.3335 -12.0316 3.0820 26 6 4.3166 -12.0709 2.1460 27 6 3.5466 -10.9461 1.9128 28 6 3.7893 -9.7870 2.6207 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6852 -3.7150 0.8878 32 1 2.6840 -3.7142 -0.8922 33 1 0.4367 -4.7613 -0.8918 34 1 0.4374 -4.7626 0.8882 35 1 2.3114 -5.9538 -2.0324 36 1 3.0828 -7.2897 -1.1442 37 1 1.3480 -8.2006 -2.6119 38 1 0.8290 -8.3767 -0.9184 39 1 -0.8913 -7.4365 -2.2828 40 1 3.8399 -7.8469 0.6466 41 1 2.2986 -8.7373 0.6465 42 1 4.3258 -8.3636 5.1312 43 1 5.8391 -8.0000 4.2512 44 1 6.3632 -10.8429 4.5315 45 1 5.9378 -12.9090 3.2594 46 1 4.1274 -12.9788 1.5924 47 1 2.7558 -10.9752 1.1778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717065021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:57 Heat of formation + Delta-G solvation = -73.933006 kcal Electronic energy + Delta-G solvation = -28720.352709 eV Core-core repulsion = 24676.118910 eV Total energy + Delta-G solvation = -4044.233799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.14832 -39.68759 -37.64116 -37.11392 -35.48345 -34.23876 -32.97622 -31.58628 -31.46327 -30.34600 -29.40115 -27.56324 -26.20497 -24.60788 -23.44342 -23.06008 -21.92580 -21.61298 -20.88950 -18.86625 -17.89911 -17.31104 -17.08391 -16.77390 -16.53735 -16.17042 -15.95115 -15.56032 -15.19267 -14.64798 -14.57579 -14.31967 -13.98482 -13.72604 -13.66964 -13.39500 -13.17223 -13.12052 -13.07649 -12.62886 -12.53785 -12.40301 -12.23885 -12.01013 -11.66016 -11.44880 -11.23564 -11.08365 -10.82997 -10.79626 -10.50730 -10.21860 -10.16199 -10.05440 -9.67838 -9.52358 -9.27834 -8.90246 -8.75488 -8.37545 -6.80764 -5.65192 -2.93563 0.84605 0.93479 2.83880 3.11142 3.30566 3.52265 3.55698 3.57651 3.66613 3.85660 4.08487 4.25628 4.48963 4.58370 4.61234 4.70654 4.72543 4.88479 4.94931 4.99801 5.06537 5.08568 5.13810 5.17637 5.23424 5.32988 5.42118 5.50819 5.61644 5.64316 5.66488 5.67857 5.89129 5.96204 6.03608 6.05588 6.06505 6.20570 6.35464 6.48494 6.61601 6.71165 6.90226 7.09654 7.47602 7.66684 7.80115 8.42517 8.53827 9.64110 10.22223 10.57607 11.57866 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.002569 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.465437 B =10897.687305 C =12347.219309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.909 3.091 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.113 3.887 12 N -0.601 5.601 13 C 0.105 3.895 14 C 0.058 3.942 15 O -0.561 6.561 16 C 0.510 3.490 17 O -0.520 6.520 18 C -0.137 4.137 19 C 0.138 3.862 20 H 0.093 0.907 21 O -0.336 6.336 22 C 0.086 3.914 23 C -0.126 4.126 24 C -0.095 4.095 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.092 4.092 28 C -0.125 4.125 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.022 0.978 32 H 0.015 0.985 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.376 0.624 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.077 -31.432 0.789 32.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.014 3.986 11 C -0.009 4.009 12 N -0.334 5.334 13 C -0.019 4.019 14 C -0.021 4.021 15 O -0.366 6.366 16 C 0.297 3.703 17 O -0.395 6.395 18 C -0.177 4.177 19 C 0.080 3.920 20 H 0.111 0.889 21 O -0.254 6.254 22 C 0.009 3.991 23 C -0.127 4.127 24 C -0.113 4.113 25 C -0.134 4.134 26 C -0.135 4.135 27 C -0.110 4.110 28 C -0.125 4.125 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.040 0.960 32 H 0.033 0.967 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.223 0.777 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.457 -30.267 1.496 31.462 hybrid contribution -0.103 0.093 -0.254 0.289 sum 8.354 -30.175 1.242 31.335 Atomic orbital electron populations 1.69659 1.05066 1.25636 1.57971 1.24743 0.95558 0.97634 1.03236 0.86239 0.78469 0.83514 0.77806 1.21337 1.21702 1.21294 1.19174 0.90957 0.84071 1.42389 0.91327 1.42199 1.05867 0.99799 1.89533 1.20917 0.93996 0.85852 0.97827 1.21677 0.94494 0.81141 1.03558 1.47800 1.57178 1.23515 1.04922 1.21691 0.95710 0.97442 0.87014 1.22702 0.87045 0.93743 0.98601 1.86614 1.22318 1.37500 1.90141 1.20379 0.79849 0.86301 0.83806 1.90764 1.53493 1.64658 1.30558 1.21883 1.02223 0.96505 0.97069 1.21056 0.93396 0.84134 0.93425 0.88900 1.89295 1.50648 1.29639 1.55851 1.21811 0.98238 0.85733 0.93315 1.21158 0.96900 0.96758 0.97847 1.20426 0.99189 0.91709 1.00011 1.21149 0.98032 0.97772 0.96451 1.21142 0.95831 0.98095 0.98458 1.20426 0.99928 0.91475 0.99211 1.21088 0.97387 0.96153 0.97880 0.93536 0.78264 0.96047 0.96727 0.89622 0.90179 0.88944 0.89151 0.92822 0.93833 0.77700 0.87992 0.88020 0.90382 0.88455 0.85672 0.85509 0.85457 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.67 13.06 55.49 0.72 -28.94 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 23.55 29.55 -169.99 -5.02 18.52 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.23 -7.06 9.99 -15.06 -0.15 -7.21 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -20.28 5.60 -59.91 -0.34 -20.62 16 10 C 0.14 3.28 6.58 -4.05 -0.03 3.26 16 11 C 0.11 2.17 5.34 -4.05 -0.02 2.15 16 12 N -0.60 -9.07 2.44 -173.69 -0.42 -9.50 16 13 C 0.11 1.12 5.62 -4.04 -0.02 1.10 16 14 C 0.06 0.49 7.38 37.16 0.27 0.77 16 15 O -0.56 -6.08 12.48 -35.23 -0.44 -6.52 16 16 C 0.51 8.01 7.59 -10.99 -0.08 7.93 16 17 O -0.52 -10.66 15.15 -3.46 -0.05 -10.71 16 18 C -0.14 -1.48 3.91 -27.89 -0.11 -1.59 16 19 C 0.14 1.65 2.84 -27.69 -0.08 1.57 16 20 H 0.09 1.19 7.92 -51.93 -0.41 0.78 16 21 O -0.34 -4.84 10.89 -44.24 -0.48 -5.32 16 22 C 0.09 0.89 7.63 36.19 0.28 1.17 16 23 C -0.13 -1.21 6.32 -104.40 -0.66 -1.87 16 24 C -0.10 -0.73 10.04 -39.66 -0.40 -1.13 16 25 C -0.12 -0.76 10.05 -39.55 -0.40 -1.16 16 26 C -0.12 -0.76 10.05 -39.55 -0.40 -1.16 16 27 C -0.09 -0.70 9.78 -39.66 -0.39 -1.08 16 28 C -0.12 -1.21 5.72 -104.40 -0.60 -1.81 16 29 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 30 H 0.38 11.08 7.67 -40.82 -0.31 10.77 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 1.62 7.11 -51.93 -0.37 1.25 16 34 H 0.08 1.71 7.42 -51.93 -0.39 1.32 16 35 H 0.09 1.08 8.07 -51.93 -0.42 0.66 16 36 H 0.09 0.70 6.44 -51.93 -0.33 0.36 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.04 0.32 7.30 -51.93 -0.38 -0.06 16 39 H 0.38 2.36 9.12 45.56 0.42 2.78 16 40 H 0.10 1.00 7.40 -51.93 -0.38 0.62 16 41 H 0.10 0.76 6.94 -51.93 -0.36 0.40 16 42 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 46 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 47 H 0.13 0.67 7.86 -52.49 -0.41 0.26 16 LS Contribution 389.13 15.07 5.86 5.86 Total: -1.00 -39.10 389.13 -9.33 -48.43 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.28 Total: 8.46 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.88 Total: 0.34 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.03 Total: -59.06 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.97 Total: -22.56 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.52 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.10 -9.33 -48.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717065021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.505 kcal (2) G-P(sol) polarization free energy of solvation -39.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds