Wall clock time and date at job start Tue Mar 31 2020 22:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48505 * 109.47213 * 240.00106 * 3 2 1 5 5 H 1.48499 * 109.46964 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47248 * 120.00047 * 3 2 1 7 7 C 1.38817 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99592 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00285 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47300 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47300 * 179.97438 * 11 10 9 13 13 C 1.46500 * 120.00210 * 270.00080 * 12 11 10 14 14 C 1.52998 * 109.47317 * 269.99777 * 13 12 11 15 15 O 1.42897 * 109.46789 * 64.99706 * 14 13 12 16 16 C 1.34781 * 120.00051 * 89.99781 * 12 11 10 17 17 O 1.21285 * 119.99707 * 0.02562 * 16 12 11 18 18 C 1.50691 * 119.99936 * 180.02562 * 16 12 11 19 19 C 1.53004 * 109.46938 * 180.02562 * 18 16 12 20 20 H 1.08998 * 110.18826 * 53.26611 * 19 18 16 21 21 O 1.43940 * 110.15457 * 291.52426 * 19 18 16 22 22 C 1.43946 * 104.94725 * 212.42977 * 21 19 18 23 23 C 1.51082 * 105.95883 * 28.44732 * 22 21 19 24 24 C 1.37968 * 132.68941 * 162.29837 * 23 22 21 25 25 C 1.38292 * 119.91531 * 180.30756 * 24 23 22 26 26 C 1.38261 * 120.04515 * 359.35753 * 25 24 23 27 27 C 1.38296 * 120.03695 * 0.68069 * 26 25 24 28 28 C 1.37970 * 119.91964 * 359.63267 * 27 26 25 29 29 H 0.96998 * 119.99614 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99665 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46952 * 60.00092 * 10 9 7 32 32 H 1.09006 * 109.46793 * 300.00472 * 10 9 7 33 33 H 1.08997 * 109.47115 * 60.00104 * 11 10 9 34 34 H 1.08997 * 109.47320 * 299.99997 * 11 10 9 35 35 H 1.09001 * 109.46739 * 29.99968 * 13 12 11 36 36 H 1.09006 * 109.46927 * 149.99326 * 13 12 11 37 37 H 1.08998 * 109.47130 * 184.99761 * 14 13 12 38 38 H 1.09000 * 109.46884 * 304.99789 * 14 13 12 39 39 H 0.96698 * 114.00043 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.47843 * 60.00343 * 18 16 12 41 41 H 1.09000 * 109.47231 * 299.99726 * 18 16 12 42 42 H 1.09010 * 110.15440 * 269.32070 * 22 21 19 43 43 H 1.09002 * 110.15237 * 147.57035 * 22 21 19 44 44 H 1.08002 * 120.03910 * 0.02562 * 24 23 22 45 45 H 1.08000 * 119.97951 * 179.70266 * 25 24 23 46 46 H 1.08003 * 119.98527 * 180.31525 * 26 25 24 47 47 H 1.08002 * 120.03967 * 179.66324 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 7 1.7961 -6.0885 -0.0038 13 6 2.1614 -6.7217 -1.2734 14 6 1.0394 -7.6633 -1.7152 15 8 -0.1373 -6.9029 -1.9967 16 6 2.1339 -6.6732 1.1626 17 8 1.8311 -6.1492 2.2137 18 6 2.8878 -7.9780 1.1608 19 6 3.1432 -8.4214 2.6027 20 1 2.2075 -8.4414 3.1614 21 8 4.0806 -7.5318 3.2365 22 6 4.8146 -8.3602 4.1568 23 6 4.8039 -9.7499 3.5641 24 6 5.5727 -10.8718 3.7962 25 6 5.3335 -12.0316 3.0820 26 6 4.3166 -12.0709 2.1460 27 6 3.5466 -10.9461 1.9128 28 6 3.7893 -9.7870 2.6207 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6852 -3.7150 0.8878 32 1 2.6840 -3.7142 -0.8922 33 1 0.4367 -4.7613 -0.8918 34 1 0.4374 -4.7626 0.8882 35 1 2.3114 -5.9538 -2.0324 36 1 3.0828 -7.2897 -1.1442 37 1 1.3480 -8.2006 -2.6119 38 1 0.8290 -8.3767 -0.9184 39 1 -0.8913 -7.4365 -2.2828 40 1 3.8399 -7.8469 0.6466 41 1 2.2986 -8.7373 0.6465 42 1 4.3258 -8.3636 5.1312 43 1 5.8391 -8.0000 4.2512 44 1 6.3632 -10.8429 4.5315 45 1 5.9378 -12.9090 3.2594 46 1 4.1274 -12.9788 1.5924 47 1 2.7558 -10.9752 1.1778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717065021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:56 Heat of formation + Delta-G solvation = -103.505634 kcal Electronic energy + Delta-G solvation = -28721.635074 eV Core-core repulsion = 24676.118910 eV Total energy + Delta-G solvation = -4045.516164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93871 -40.83094 -38.38416 -38.00422 -37.08266 -35.86847 -34.00889 -33.27111 -32.23553 -31.30624 -30.53155 -28.98037 -27.24372 -25.77769 -24.98145 -23.92004 -23.28023 -22.50269 -21.86580 -20.08638 -19.21069 -18.71684 -18.10306 -17.66796 -17.50882 -17.18088 -16.89185 -16.52041 -16.25639 -16.23021 -15.52651 -15.40499 -15.29460 -15.05246 -15.02778 -14.62901 -14.56203 -14.16333 -13.82955 -13.69902 -13.47958 -13.26930 -13.18744 -13.06585 -12.88446 -12.81654 -12.61327 -12.48825 -12.19699 -12.17835 -12.13390 -11.89036 -11.79363 -11.06594 -10.99515 -10.91204 -10.76941 -9.83068 -9.68326 -9.54609 -9.09112 -7.98854 -5.30438 0.27138 0.40463 1.43550 1.49030 1.54994 1.63645 1.94050 2.54465 2.74541 2.85498 3.17798 3.33209 3.45825 3.46403 3.65814 3.78672 4.05466 4.06428 4.10046 4.16071 4.23369 4.23960 4.27972 4.34015 4.40289 4.44756 4.49783 4.53082 4.59795 4.63681 4.70326 4.76267 4.78632 4.89118 4.94021 5.05686 5.07517 5.10645 5.40032 5.41705 5.45602 5.55522 5.55961 5.79564 6.01662 6.21977 6.44420 7.01503 7.20749 7.27460 7.98870 8.25578 9.24493 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.002569 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.465437 B =10897.687305 C =12347.219309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.982 3.018 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.254 4.254 8 H 0.072 0.928 9 N -0.742 5.742 10 C 0.151 3.849 11 C 0.134 3.866 12 N -0.599 5.599 13 C 0.094 3.906 14 C 0.059 3.941 15 O -0.596 6.596 16 C 0.502 3.498 17 O -0.580 6.580 18 C -0.122 4.122 19 C 0.134 3.866 20 H 0.070 0.930 21 O -0.377 6.377 22 C 0.079 3.921 23 C -0.145 4.145 24 C -0.103 4.103 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.093 4.093 28 C -0.139 4.139 29 H 0.254 0.746 30 H 0.375 0.625 31 H -0.004 1.004 32 H 0.026 0.974 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.394 0.606 40 H 0.119 0.881 41 H 0.144 0.856 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.141 0.859 45 H 0.154 0.846 46 H 0.157 0.843 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.711 -34.471 -0.918 35.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.809 3.191 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.386 4.386 8 H 0.090 0.910 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.010 3.990 12 N -0.331 5.331 13 C -0.028 4.028 14 C -0.019 4.019 15 O -0.404 6.404 16 C 0.292 3.708 17 O -0.459 6.459 18 C -0.161 4.161 19 C 0.076 3.924 20 H 0.087 0.913 21 O -0.296 6.296 22 C 0.003 3.997 23 C -0.145 4.145 24 C -0.120 4.120 25 C -0.133 4.133 26 C -0.133 4.133 27 C -0.111 4.111 28 C -0.139 4.139 29 H 0.063 0.937 30 H 0.206 0.794 31 H 0.014 0.986 32 H 0.044 0.956 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.145 0.855 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.244 0.756 40 H 0.137 0.863 41 H 0.162 0.838 42 H 0.094 0.906 43 H 0.124 0.876 44 H 0.159 0.841 45 H 0.171 0.829 46 H 0.175 0.825 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.120 -33.375 -0.255 34.876 hybrid contribution -0.588 0.942 0.293 1.148 sum 9.532 -32.432 0.038 33.804 Atomic orbital electron populations 1.69829 1.06679 1.26452 1.58854 1.25691 0.96590 1.01380 1.03062 0.85100 0.77200 0.78477 0.78277 1.19790 1.21496 1.20649 1.19565 0.91370 0.85264 1.42362 0.91028 1.42386 1.05618 1.00994 1.89549 1.20939 0.94379 0.85640 0.96757 1.21162 0.93473 0.82168 1.02201 1.47887 1.56328 1.21975 1.06907 1.22139 0.98485 0.97869 0.84313 1.22785 0.85511 0.92968 1.00657 1.86556 1.23869 1.39499 1.90488 1.21330 0.79099 0.87534 0.82845 1.90736 1.55882 1.66540 1.32773 1.21923 1.02618 0.94321 0.97225 1.21038 0.92393 0.85504 0.93447 0.91251 1.89240 1.51528 1.31940 1.56886 1.21926 0.98274 0.86654 0.92853 1.21162 0.98110 0.96648 0.98595 1.20702 0.99290 0.91471 1.00579 1.21551 0.98083 0.98035 0.95648 1.21553 0.94989 0.98693 0.98115 1.20755 1.00507 0.90705 0.99138 1.20951 0.97833 0.95744 0.99400 0.93709 0.79355 0.98617 0.95581 0.89187 0.93132 0.90097 0.85517 0.89169 0.92350 0.75629 0.86308 0.83797 0.90567 0.87603 0.84133 0.82861 0.82502 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.71 13.06 21.65 0.28 -62.43 16 2 C -0.07 -4.60 5.50 84.86 0.47 -4.14 16 3 Si 0.98 48.82 29.55 68.60 2.03 50.85 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 7 C -0.25 -15.63 9.99 84.03 0.84 -14.79 16 8 H 0.07 4.26 7.83 -2.91 -0.02 4.23 16 9 N -0.74 -42.84 5.60 -343.46 -1.92 -44.77 16 10 C 0.15 7.22 6.58 86.38 0.57 7.79 16 11 C 0.13 5.36 5.34 86.38 0.46 5.82 16 12 N -0.60 -18.07 2.44 -821.83 -2.00 -20.07 16 13 C 0.09 1.79 5.62 86.38 0.49 2.27 16 14 C 0.06 0.80 7.38 71.98 0.53 1.34 16 15 O -0.60 -11.96 12.48 -148.98 -1.86 -13.82 16 16 C 0.50 16.07 7.59 87.65 0.67 16.73 16 17 O -0.58 -25.41 15.15 5.57 0.08 -25.32 16 18 C -0.12 -2.46 3.91 29.85 0.12 -2.34 16 19 C 0.13 3.25 2.84 29.97 0.09 3.33 16 20 H 0.07 1.93 7.92 -2.39 -0.02 1.91 16 21 O -0.38 -11.49 10.89 -140.36 -1.53 -13.02 16 22 C 0.08 1.74 7.63 71.36 0.54 2.29 16 23 C -0.14 -2.69 6.32 -19.72 -0.12 -2.81 16 24 C -0.10 -1.37 10.04 22.22 0.22 -1.14 16 25 C -0.12 -1.12 10.05 22.29 0.22 -0.89 16 26 C -0.12 -1.03 10.05 22.29 0.22 -0.81 16 27 C -0.09 -1.10 9.78 22.22 0.22 -0.88 16 28 C -0.14 -2.52 5.72 -19.72 -0.11 -2.63 16 29 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.37 22.63 7.67 -92.71 -0.71 21.92 16 31 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.09 3.51 7.11 -2.39 -0.02 3.49 16 34 H 0.05 2.31 7.42 -2.39 -0.02 2.29 16 35 H 0.08 1.76 8.07 -2.39 -0.02 1.74 16 36 H 0.13 1.47 6.44 -2.38 -0.02 1.46 16 37 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.63 7.30 -2.39 -0.02 0.62 16 39 H 0.39 4.26 9.12 -74.06 -0.68 3.58 16 40 H 0.12 2.04 7.40 -2.39 -0.02 2.02 16 41 H 0.14 1.61 6.94 -2.39 -0.02 1.60 16 42 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 45 H 0.15 0.63 8.06 -2.91 -0.02 0.61 16 46 H 0.16 0.47 8.06 -2.91 -0.02 0.44 16 47 H 0.15 0.93 7.86 -2.91 -0.02 0.90 16 Total: -1.00 -89.84 389.13 0.11 -89.73 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.39 Total: 29.72 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.42 Total: 9.13 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -3.64 Total: -127.27 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -3.30 Total: -52.16 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.85 kcal Total: -89.84 0.11 -89.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717065021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.773 kcal (2) G-P(sol) polarization free energy of solvation -89.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds