Wall clock time and date at job start Tue Mar 31 2020 20:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.07999 * 120.00285 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99632 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47341 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47351 * 179.97438 * 11 10 9 13 13 H 1.09001 * 110.88381 * 305.70403 * 12 11 10 14 14 C 1.55154 * 111.00263 * 181.82001 * 12 11 10 15 15 C 1.54370 * 102.92043 * 206.45373 * 14 12 11 16 16 N 1.47028 * 107.28467 * 22.13994 * 15 14 12 17 17 C 1.34780 * 125.64558 * 181.05560 * 16 15 14 18 18 O 1.21691 * 120.00058 * 180.02562 * 17 16 15 19 19 C 1.46662 * 120.00149 * 0.04333 * 17 16 15 20 20 O 1.35394 * 126.11656 * 0.02562 * 19 17 16 21 21 C 1.34400 * 109.47572 * 179.97438 * 20 19 17 22 22 C 1.33901 * 108.55932 * 359.97438 * 21 20 19 23 23 C 1.35186 * 126.11861 * 179.71849 * 19 17 16 24 24 C 1.50726 * 130.57436 * 0.99322 * 23 19 17 25 25 C 1.53674 * 107.50311 * 163.70489 * 24 23 19 26 26 O 1.42906 * 109.97343 * 48.01809 * 25 24 23 27 27 C 1.43523 * 114.75912 * 287.61543 * 26 25 24 28 28 C 1.47423 * 108.70442 * 1.09134 * 16 15 14 29 29 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 30 30 H 0.97004 * 120.00593 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47136 * 300.00161 * 10 9 7 32 32 H 1.09002 * 109.47352 * 60.00193 * 10 9 7 33 33 H 1.08997 * 109.47244 * 300.00414 * 11 10 9 34 34 H 1.09002 * 109.46787 * 59.99789 * 11 10 9 35 35 H 1.08994 * 110.72230 * 324.78653 * 14 12 11 36 36 H 1.08998 * 110.71984 * 88.06743 * 14 12 11 37 37 H 1.08994 * 109.84938 * 262.73459 * 15 14 12 38 38 H 1.08997 * 109.90127 * 141.57431 * 15 14 12 39 39 H 1.08001 * 125.71851 * 179.97438 * 21 20 19 40 40 H 1.09000 * 110.01956 * 44.08942 * 24 23 19 41 41 H 1.09006 * 109.64651 * 283.10501 * 24 23 19 42 42 H 1.08997 * 109.38903 * 287.86425 * 25 24 23 43 43 H 1.09003 * 109.39026 * 168.16717 * 25 24 23 44 44 H 1.08999 * 109.81997 * 291.95804 * 27 26 25 45 45 H 1.08997 * 109.87142 * 171.06528 * 27 26 25 46 46 H 1.09001 * 110.36764 * 217.02785 * 28 16 15 47 47 H 1.08998 * 110.36144 * 94.70994 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 1.4702 -2.1375 -0.0101 9 7 3.3796 -1.2022 -0.0065 10 6 4.1120 -2.4709 -0.0122 11 6 5.6163 -2.1915 -0.0109 12 6 6.3813 -3.5165 -0.0162 13 1 6.0608 -4.1535 0.8082 14 6 7.9131 -3.2745 0.0309 15 6 8.4832 -4.5376 -0.6492 16 7 7.4137 -5.1051 -1.4834 17 6 7.5076 -6.2263 -2.2254 18 8 6.5541 -6.6040 -2.8804 19 6 8.7587 -6.9914 -2.2430 20 8 9.8901 -6.6868 -1.5646 21 6 10.8298 -7.6125 -1.8217 22 6 10.3164 -8.5186 -2.6635 23 6 8.9867 -8.1301 -2.9350 24 6 8.0904 -8.9096 -3.8629 25 6 8.9817 -9.8646 -4.6723 26 8 9.8739 -10.5585 -3.7979 27 6 10.9359 -9.7556 -3.2620 28 6 6.2220 -4.2441 -1.3745 29 1 -0.4850 0.8401 0.0041 30 1 3.8647 -0.3622 -0.0031 31 1 3.8490 -3.0463 0.8755 32 1 3.8484 -3.0387 -0.9045 33 1 5.8797 -1.6159 -0.8982 34 1 5.8796 -1.6239 0.8816 35 1 8.1797 -2.3801 -0.5321 36 1 8.2603 -3.2007 1.0615 37 1 8.7860 -5.2608 0.1079 38 1 9.3368 -4.2704 -1.2721 39 1 11.8312 -7.6238 -1.4173 40 1 7.5687 -8.2296 -4.5364 41 1 7.3682 -9.4814 -3.2802 42 1 9.5590 -9.2926 -5.3987 43 1 8.3557 -10.5861 -5.1974 44 1 11.6251 -9.4749 -4.0584 45 1 11.4689 -10.3126 -2.4914 46 1 5.3153 -4.8491 -1.3768 47 1 6.1996 -3.5224 -2.1911 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717092194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:21 Heat of formation + Delta-G solvation = -49.219241 kcal Electronic energy + Delta-G solvation = -28386.554381 eV Core-core repulsion = 24343.392252 eV Total energy + Delta-G solvation = -4043.162130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.23783 -40.10866 -38.96266 -37.96854 -35.37772 -34.01598 -33.09903 -32.43220 -31.30391 -29.82877 -29.75522 -27.48395 -26.65730 -25.01904 -23.81211 -23.05834 -22.32282 -21.22256 -20.35853 -20.07313 -19.68276 -17.92603 -17.57471 -17.03309 -16.78882 -16.51568 -16.25000 -15.68440 -15.54407 -15.27902 -14.89642 -14.55458 -14.08855 -13.96626 -13.82914 -13.73184 -13.40090 -13.15000 -13.06072 -12.90447 -12.69413 -12.62837 -12.30114 -11.99860 -11.88919 -11.68495 -11.31722 -11.27955 -10.92050 -10.74356 -10.62146 -10.51100 -10.38410 -10.15604 -10.09045 -9.86054 -9.57477 -9.14467 -8.88052 -8.78763 -7.21805 -5.75082 -3.10730 0.71397 1.79868 2.25551 2.79087 2.88639 3.33622 3.37774 3.39996 3.45636 4.00655 4.04425 4.32322 4.38532 4.47649 4.54961 4.60164 4.67665 4.77363 4.81329 4.87143 5.00058 5.02677 5.18813 5.24949 5.31174 5.38828 5.39415 5.46793 5.50812 5.56163 5.58109 5.66762 5.68765 5.72982 5.78290 5.88295 5.92596 5.96079 6.07132 6.11323 6.25878 6.43350 6.67445 6.73244 6.76389 7.18403 7.78418 8.01629 8.43939 9.23074 9.95286 10.15016 11.43385 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026483 B = 0.002033 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.036308 B =13771.407030 C =14577.653792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.155 3.845 11 C -0.119 4.119 12 C -0.094 4.094 13 H 0.088 0.912 14 C -0.128 4.128 15 C 0.103 3.897 16 N -0.609 5.609 17 C 0.613 3.387 18 O -0.515 6.515 19 C -0.059 4.059 20 O -0.163 6.163 21 C 0.011 3.989 22 C -0.238 4.238 23 C -0.084 4.084 24 C -0.088 4.088 25 C 0.063 3.937 26 O -0.379 6.379 27 C 0.135 3.865 28 C 0.110 3.890 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.212 0.788 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.569 -17.997 -4.945 34.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.194 4.194 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.027 3.973 11 C -0.157 4.157 12 C -0.114 4.114 13 H 0.107 0.893 14 C -0.166 4.166 15 C -0.020 4.020 16 N -0.342 5.342 17 C 0.401 3.599 18 O -0.393 6.393 19 C -0.110 4.110 20 O -0.060 6.060 21 C -0.059 4.059 22 C -0.240 4.240 23 C -0.087 4.087 24 C -0.125 4.125 25 C -0.014 4.014 26 O -0.297 6.297 27 C 0.059 3.941 28 C -0.011 4.011 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.228 0.772 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.121 0.879 44 H 0.085 0.915 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 28.802 -18.282 -5.126 34.497 hybrid contribution 0.754 1.504 0.029 1.682 sum 29.555 -16.779 -5.097 34.366 Atomic orbital electron populations 1.69712 1.05095 1.25785 1.57664 1.24700 0.95283 0.97261 1.02140 0.86513 0.79171 0.84922 0.77711 1.21108 1.20365 1.21739 1.19078 0.80672 0.94771 1.42837 0.89217 1.42716 1.04093 1.02276 1.91221 1.20670 0.88495 0.89352 0.98745 1.21738 0.96305 0.95140 1.02499 1.22346 0.94424 0.97669 0.96964 0.89320 1.22749 0.95533 0.96845 1.01459 1.22118 0.90107 0.95744 0.94028 1.48386 1.15874 1.24276 1.45685 1.16111 0.84606 0.79286 0.79861 1.90901 1.36370 1.68656 1.43337 1.21346 0.87771 0.99367 1.02506 1.84405 1.19699 1.45139 1.56744 1.23640 0.94389 0.88678 0.99165 1.21026 0.96134 1.01876 1.04936 1.20200 0.95222 0.94273 0.99052 1.20909 0.96797 0.97511 0.97303 1.22715 0.91729 0.95757 0.91214 1.87995 1.40870 1.36321 1.64529 1.21036 0.88551 0.87488 0.97040 1.22491 0.87873 0.92950 0.97817 0.93083 0.80721 0.95512 0.95440 0.91579 0.91218 0.90178 0.89683 0.91041 0.91147 0.77179 0.88304 0.89000 0.92752 0.87912 0.91498 0.87574 0.89498 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 2 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 3 Si 0.89 22.25 27.74 -169.99 -4.71 17.53 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 6 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 9 N -0.76 -18.16 5.41 -59.91 -0.32 -18.49 16 10 C 0.15 2.93 6.14 -4.04 -0.02 2.90 16 11 C -0.12 -1.65 4.84 -26.73 -0.13 -1.78 16 12 C -0.09 -1.07 3.04 -88.47 -0.27 -1.34 16 13 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 14 C -0.13 -1.11 6.42 -24.87 -0.16 -1.27 16 15 C 0.10 0.95 5.55 -3.04 -0.02 0.93 16 16 N -0.61 -7.44 3.33 -172.04 -0.57 -8.01 16 17 C 0.61 8.44 7.82 -12.86 -0.10 8.34 16 18 O -0.51 -8.49 15.89 5.20 0.08 -8.41 16 19 C -0.06 -0.69 6.93 -37.27 -0.26 -0.95 16 20 O -0.16 -1.54 8.33 2.33 0.02 -1.52 16 21 C 0.01 0.07 12.06 29.21 0.35 0.42 16 22 C -0.24 -1.98 6.04 -105.02 -0.63 -2.62 16 23 C -0.08 -0.92 6.02 -104.58 -0.63 -1.55 16 24 C -0.09 -0.88 5.70 -27.52 -0.16 -1.03 16 25 C 0.06 0.49 6.75 37.51 0.25 0.74 16 26 O -0.38 -3.41 10.70 -35.23 -0.38 -3.79 16 27 C 0.14 0.88 7.27 36.02 0.26 1.15 16 28 C 0.11 1.40 5.71 -2.53 -0.01 1.39 16 29 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 30 H 0.36 8.33 5.53 -40.82 -0.23 8.10 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.54 7.60 -51.93 -0.39 0.14 16 33 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.62 7.68 -51.93 -0.40 0.22 16 38 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 39 H 0.21 0.45 8.06 -52.49 -0.42 0.02 16 40 H 0.10 1.03 7.64 -51.93 -0.40 0.63 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 1.24 8.00 -51.93 -0.42 0.82 16 47 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -35.84 378.27 -8.49 -44.33 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.30 Total: 3.54 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.78 Total: -1.90 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.12 Total: -55.50 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.28 Total: -13.71 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.84 -8.49 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717092194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.893 kcal (2) G-P(sol) polarization free energy of solvation -35.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds