Wall clock time and date at job start Tue Mar 31 2020 20:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.07999 * 120.00285 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99632 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47341 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47351 * 179.97438 * 11 10 9 13 13 H 1.09001 * 110.88381 * 305.70403 * 12 11 10 14 14 C 1.55154 * 111.00263 * 181.82001 * 12 11 10 15 15 C 1.54370 * 102.92043 * 206.45373 * 14 12 11 16 16 N 1.47028 * 107.28467 * 22.13994 * 15 14 12 17 17 C 1.34780 * 125.64558 * 181.05560 * 16 15 14 18 18 O 1.21691 * 120.00058 * 180.02562 * 17 16 15 19 19 C 1.46662 * 120.00149 * 0.04333 * 17 16 15 20 20 O 1.35394 * 126.11656 * 0.02562 * 19 17 16 21 21 C 1.34400 * 109.47572 * 179.97438 * 20 19 17 22 22 C 1.33901 * 108.55932 * 359.97438 * 21 20 19 23 23 C 1.35186 * 126.11861 * 179.71849 * 19 17 16 24 24 C 1.50726 * 130.57436 * 0.99322 * 23 19 17 25 25 C 1.53674 * 107.50311 * 163.70489 * 24 23 19 26 26 O 1.42906 * 109.97343 * 48.01809 * 25 24 23 27 27 C 1.43523 * 114.75912 * 287.61543 * 26 25 24 28 28 C 1.47423 * 108.70442 * 1.09134 * 16 15 14 29 29 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 30 30 H 0.97004 * 120.00593 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47136 * 300.00161 * 10 9 7 32 32 H 1.09002 * 109.47352 * 60.00193 * 10 9 7 33 33 H 1.08997 * 109.47244 * 300.00414 * 11 10 9 34 34 H 1.09002 * 109.46787 * 59.99789 * 11 10 9 35 35 H 1.08994 * 110.72230 * 324.78653 * 14 12 11 36 36 H 1.08998 * 110.71984 * 88.06743 * 14 12 11 37 37 H 1.08994 * 109.84938 * 262.73459 * 15 14 12 38 38 H 1.08997 * 109.90127 * 141.57431 * 15 14 12 39 39 H 1.08001 * 125.71851 * 179.97438 * 21 20 19 40 40 H 1.09000 * 110.01956 * 44.08942 * 24 23 19 41 41 H 1.09006 * 109.64651 * 283.10501 * 24 23 19 42 42 H 1.08997 * 109.38903 * 287.86425 * 25 24 23 43 43 H 1.09003 * 109.39026 * 168.16717 * 25 24 23 44 44 H 1.08999 * 109.81997 * 291.95804 * 27 26 25 45 45 H 1.08997 * 109.87142 * 171.06528 * 27 26 25 46 46 H 1.09001 * 110.36764 * 217.02785 * 28 16 15 47 47 H 1.08998 * 110.36144 * 94.70994 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 1.4702 -2.1375 -0.0101 9 7 3.3796 -1.2022 -0.0065 10 6 4.1120 -2.4709 -0.0122 11 6 5.6163 -2.1915 -0.0109 12 6 6.3813 -3.5165 -0.0162 13 1 6.0608 -4.1535 0.8082 14 6 7.9131 -3.2745 0.0309 15 6 8.4832 -4.5376 -0.6492 16 7 7.4137 -5.1051 -1.4834 17 6 7.5076 -6.2263 -2.2254 18 8 6.5541 -6.6040 -2.8804 19 6 8.7587 -6.9914 -2.2430 20 8 9.8901 -6.6868 -1.5646 21 6 10.8298 -7.6125 -1.8217 22 6 10.3164 -8.5186 -2.6635 23 6 8.9867 -8.1301 -2.9350 24 6 8.0904 -8.9096 -3.8629 25 6 8.9817 -9.8646 -4.6723 26 8 9.8739 -10.5585 -3.7979 27 6 10.9359 -9.7556 -3.2620 28 6 6.2220 -4.2441 -1.3745 29 1 -0.4850 0.8401 0.0041 30 1 3.8647 -0.3622 -0.0031 31 1 3.8490 -3.0463 0.8755 32 1 3.8484 -3.0387 -0.9045 33 1 5.8797 -1.6159 -0.8982 34 1 5.8796 -1.6239 0.8816 35 1 8.1797 -2.3801 -0.5321 36 1 8.2603 -3.2007 1.0615 37 1 8.7860 -5.2608 0.1079 38 1 9.3368 -4.2704 -1.2721 39 1 11.8312 -7.6238 -1.4173 40 1 7.5687 -8.2296 -4.5364 41 1 7.3682 -9.4814 -3.2802 42 1 9.5590 -9.2926 -5.3987 43 1 8.3557 -10.5861 -5.1974 44 1 11.6251 -9.4749 -4.0584 45 1 11.4689 -10.3126 -2.4914 46 1 5.3153 -4.8491 -1.3768 47 1 6.1996 -3.5224 -2.1911 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717092194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:20 Heat of formation + Delta-G solvation = -74.507231 kcal Electronic energy + Delta-G solvation = -28387.650951 eV Core-core repulsion = 24343.392252 eV Total energy + Delta-G solvation = -4044.258699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.91796 -41.06786 -39.57751 -39.00248 -37.04131 -34.81862 -34.50748 -33.24615 -32.92858 -30.98452 -30.54247 -28.72020 -27.21017 -26.25517 -24.73740 -24.34725 -23.24863 -22.66050 -21.36797 -20.77317 -20.50340 -19.64598 -18.72915 -17.83062 -17.51811 -17.28557 -17.06455 -16.59441 -16.37958 -16.28247 -16.03248 -15.81500 -15.73689 -15.12516 -14.82917 -14.59277 -14.49664 -14.28911 -14.19104 -13.87317 -13.69538 -13.64804 -13.32880 -13.11619 -13.07432 -12.88641 -12.61353 -12.35863 -12.11743 -11.95000 -11.91102 -11.81972 -11.60838 -11.51344 -11.46989 -10.97352 -10.84662 -10.55088 -9.97035 -9.59319 -9.31723 -8.04208 -5.38805 -0.07702 1.17600 1.37230 1.42644 1.46715 1.50073 1.93548 1.99092 2.48211 2.79643 3.26356 3.26700 3.38693 3.48909 3.60341 3.66899 3.75176 3.90223 3.97581 4.14669 4.23351 4.25207 4.28215 4.33245 4.43916 4.48790 4.50192 4.56122 4.68423 4.69468 4.75421 4.77366 4.79748 4.87168 4.91283 4.93541 5.01430 5.05576 5.11377 5.21472 5.26210 5.33508 5.42895 5.73461 5.74404 6.11778 6.19754 6.26208 6.79694 7.06661 7.82072 8.03057 9.17481 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026483 B = 0.002033 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.036308 B =13771.407030 C =14577.653792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.070 4.070 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.247 1.247 6 H -0.296 1.296 7 C -0.241 4.241 8 H 0.050 0.950 9 N -0.759 5.759 10 C 0.149 3.851 11 C -0.103 4.103 12 C -0.086 4.086 13 H 0.089 0.911 14 C -0.115 4.115 15 C 0.102 3.898 16 N -0.610 5.610 17 C 0.604 3.396 18 O -0.561 6.561 19 C -0.088 4.088 20 O -0.164 6.164 21 C 0.038 3.962 22 C -0.255 4.255 23 C -0.097 4.097 24 C -0.091 4.091 25 C 0.068 3.932 26 O -0.398 6.398 27 C 0.132 3.868 28 C 0.107 3.893 29 H 0.259 0.741 30 H 0.369 0.631 31 H 0.022 0.978 32 H 0.015 0.985 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.263 0.737 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.130 0.870 46 H 0.059 0.941 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.607 -17.241 -4.103 38.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.261 4.261 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.172 1.172 6 H -0.223 1.223 7 C -0.372 4.372 8 H 0.068 0.932 9 N -0.405 5.405 10 C 0.023 3.977 11 C -0.141 4.141 12 C -0.106 4.106 13 H 0.107 0.893 14 C -0.152 4.152 15 C -0.020 4.020 16 N -0.342 5.342 17 C 0.394 3.606 18 O -0.443 6.443 19 C -0.139 4.139 20 O -0.060 6.060 21 C -0.030 4.030 22 C -0.257 4.257 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.009 4.009 26 O -0.317 6.317 27 C 0.056 3.944 28 C -0.015 4.015 29 H 0.067 0.933 30 H 0.202 0.798 31 H 0.040 0.960 32 H 0.033 0.967 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.279 0.721 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.105 0.895 45 H 0.148 0.852 46 H 0.077 0.923 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 33.912 -17.540 -4.263 38.417 hybrid contribution -0.809 1.113 -0.227 1.395 sum 33.103 -16.427 -4.490 37.226 Atomic orbital electron populations 1.69917 1.07345 1.26852 1.59498 1.25660 0.96296 1.01795 1.02371 0.85277 0.78644 0.78718 0.78337 1.19955 1.17154 1.22284 1.19045 0.82997 0.93396 1.41762 0.93225 1.42705 1.02408 1.04387 1.91005 1.20865 0.91823 0.87260 0.97789 1.21595 0.92269 0.96690 1.03584 1.22223 0.96563 0.96055 0.95729 0.89282 1.22753 0.92487 0.96843 1.03160 1.22321 0.89537 0.96100 0.94018 1.48489 1.16391 1.23769 1.45529 1.16477 0.85068 0.79579 0.79441 1.90857 1.38157 1.69939 1.45309 1.20925 0.88132 1.00113 1.04753 1.84387 1.19351 1.45882 1.56429 1.24655 0.95071 0.86492 0.96815 1.21326 0.95048 1.03291 1.06023 1.20550 0.96765 0.94100 0.98612 1.20901 0.97046 0.97634 0.97260 1.22721 0.91660 0.95659 0.90837 1.87964 1.41578 1.37317 1.64801 1.21344 0.88043 0.86778 0.98196 1.22426 0.87490 0.92737 0.98861 0.93275 0.79790 0.96023 0.96659 0.90925 0.89550 0.89082 0.87111 0.90042 0.89835 0.72087 0.89737 0.90535 0.91643 0.86636 0.89542 0.85246 0.92261 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.73 13.97 21.65 0.30 -64.42 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.96 45.62 27.74 68.60 1.90 47.52 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.25 -10.36 6.52 99.48 0.65 -9.71 16 6 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 7 C -0.24 -14.27 10.47 84.03 0.88 -13.39 16 8 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 9 N -0.76 -36.04 5.41 -343.45 -1.86 -37.89 16 10 C 0.15 5.64 6.14 86.38 0.53 6.17 16 11 C -0.10 -2.65 4.84 30.60 0.15 -2.50 16 12 C -0.09 -1.80 3.04 -9.40 -0.03 -1.83 16 13 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 14 C -0.11 -1.58 6.42 31.80 0.20 -1.38 16 15 C 0.10 1.62 5.55 86.74 0.48 2.10 16 16 N -0.61 -14.88 3.33 -816.43 -2.72 -17.59 16 17 C 0.60 17.41 7.82 86.44 0.68 18.09 16 18 O -0.56 -20.17 15.89 -4.32 -0.07 -20.24 16 19 C -0.09 -2.06 6.93 23.77 0.16 -1.90 16 20 O -0.16 -2.69 8.33 -14.57 -0.12 -2.81 16 21 C 0.04 0.37 12.06 66.83 0.81 1.18 16 22 C -0.26 -3.66 6.04 -20.12 -0.12 -3.78 16 23 C -0.10 -2.11 6.02 -19.84 -0.12 -2.23 16 24 C -0.09 -1.93 5.70 30.08 0.17 -1.76 16 25 C 0.07 1.03 6.75 72.21 0.49 1.52 16 26 O -0.40 -6.60 10.70 -148.98 -1.59 -8.19 16 27 C 0.13 1.35 7.27 71.25 0.52 1.87 16 28 C 0.11 2.79 5.71 86.85 0.50 3.28 16 29 H 0.26 16.06 8.31 -92.70 -0.77 15.29 16 30 H 0.37 16.18 5.53 -92.71 -0.51 15.66 16 31 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.02 0.62 7.60 -2.39 -0.02 0.60 16 33 H 0.07 1.81 8.04 -2.39 -0.02 1.79 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 35 H 0.09 1.12 8.04 -2.39 -0.02 1.10 16 36 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.16 7.68 -2.39 -0.02 1.15 16 38 H 0.08 1.15 7.79 -2.39 -0.02 1.13 16 39 H 0.26 -0.48 8.06 -2.91 -0.02 -0.50 16 40 H 0.08 1.98 7.64 -2.39 -0.02 1.96 16 41 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.07 0.83 8.08 -2.39 -0.02 0.82 16 43 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.06 1.84 8.00 -2.39 -0.02 1.82 16 47 H 0.07 1.90 7.96 -2.39 -0.02 1.88 16 Total: -1.00 -82.99 378.27 2.02 -80.97 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.41 Total: 20.99 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.76 Total: 1.67 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -4.27 Total: -119.91 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -1.78 Total: -31.25 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Total: -82.99 2.02 -80.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717092194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.463 kcal (2) G-P(sol) polarization free energy of solvation -82.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds