Wall clock time and date at job start Tue Mar 31 2020 20:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00415 * 2 1 4 4 H 1.48497 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47105 * 299.99648 * 3 2 1 6 6 H 1.48501 * 109.47106 * 59.99795 * 3 2 1 7 7 C 1.38816 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99841 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00284 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47095 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47051 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.88631 * 57.42858 * 12 11 10 14 14 C 1.55162 * 111.00512 * 181.35121 * 12 11 10 15 15 C 1.54334 * 103.01925 * 153.38238 * 14 12 11 16 16 N 1.47018 * 107.27067 * 338.13892 * 15 14 12 17 17 C 1.34774 * 125.65543 * 178.85142 * 16 15 14 18 18 O 1.21690 * 120.00761 * 179.69262 * 17 16 15 19 19 C 1.46657 * 119.99586 * 359.69049 * 17 16 15 20 20 O 1.35396 * 126.11757 * 359.97438 * 19 17 16 21 21 C 1.34402 * 109.47846 * 179.81530 * 20 19 17 22 22 C 1.33902 * 108.55725 * 0.25943 * 21 20 19 23 23 C 1.35188 * 126.11870 * 180.02562 * 19 17 16 24 24 C 1.50712 * 130.57963 * 0.12945 * 23 19 17 25 25 C 1.53672 * 107.44455 * 164.19305 * 24 23 19 26 26 O 1.42904 * 109.97938 * 48.25721 * 25 24 23 27 27 C 1.43512 * 114.77147 * 287.64036 * 26 25 24 28 28 C 1.47433 * 108.70019 * 358.58891 * 16 15 14 29 29 H 0.97004 * 119.99536 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99456 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47139 * 59.99837 * 10 9 7 32 32 H 1.08997 * 109.46576 * 300.00004 * 10 9 7 33 33 H 1.09003 * 109.47257 * 59.99929 * 11 10 9 34 34 H 1.08997 * 109.47441 * 299.99510 * 11 10 9 35 35 H 1.09002 * 110.71492 * 271.93679 * 14 12 11 36 36 H 1.08995 * 110.71815 * 35.03774 * 14 12 11 37 37 H 1.08994 * 109.98878 * 218.66215 * 15 14 12 38 38 H 1.09004 * 109.77934 * 97.50019 * 15 14 12 39 39 H 1.07992 * 125.72635 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.86347 * 283.67991 * 24 23 19 41 41 H 1.09003 * 109.86487 * 44.63346 * 24 23 19 42 42 H 1.09002 * 109.38880 * 168.40705 * 25 24 23 43 43 H 1.09000 * 109.39053 * 288.10136 * 25 24 23 44 44 H 1.09003 * 109.83069 * 291.97904 * 27 26 25 45 45 H 1.08997 * 109.82678 * 171.04753 * 27 26 25 46 46 H 1.08992 * 110.36661 * 143.19251 * 28 16 15 47 47 H 1.09000 * 110.36504 * 265.51848 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0021 12 6 1.8285 -6.1447 0.0026 13 1 2.4975 -6.2069 0.8609 14 6 0.8524 -7.3504 -0.0311 15 6 1.6921 -8.4589 -0.7005 16 7 2.7623 -7.7969 -1.4606 17 6 3.7233 -8.4208 -2.1704 18 8 4.5589 -7.7685 -2.7679 19 6 3.7618 -9.8859 -2.2227 20 8 2.8992 -10.7294 -1.6081 21 6 3.2416 -11.9996 -1.8835 22 6 4.3257 -11.9879 -2.6694 23 6 4.6655 -10.6359 -2.8923 24 6 5.8435 -10.2276 -3.7390 25 6 6.7353 -11.4666 -3.9158 26 8 5.9405 -12.5887 -4.3048 27 6 5.1118 -13.1281 -3.2646 28 6 2.6065 -6.3373 -1.3230 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.6838 -3.7143 0.8921 32 1 2.6852 -3.7150 -0.8878 33 1 0.4372 -4.7626 -0.8882 34 1 0.4366 -4.7614 0.8918 35 1 0.5622 -7.6400 0.9789 36 1 -0.0268 -7.1180 -0.6319 37 1 1.0667 -9.0446 -1.3741 38 1 2.1249 -9.1055 0.0629 39 1 2.7306 -12.8818 -1.5274 40 1 5.4972 -9.8787 -4.7119 41 1 6.4022 -9.4361 -3.2394 42 1 7.4820 -11.2682 -4.6847 43 1 7.2378 -11.6881 -2.9742 44 1 5.7343 -13.5885 -2.4972 45 1 4.4299 -13.8689 -3.6820 46 1 3.5824 -5.8556 -1.2635 47 1 2.0349 -5.9363 -2.1600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717092195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:39 Heat of formation + Delta-G solvation = -53.664072 kcal Electronic energy + Delta-G solvation = -28344.035596 eV Core-core repulsion = 24300.680724 eV Total energy + Delta-G solvation = -4043.354872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 14.97 seconds Orbital eigenvalues (eV) -43.21184 -40.05979 -38.94658 -37.90852 -35.18708 -33.98931 -33.05762 -32.41279 -31.12139 -29.74573 -29.51827 -27.22861 -26.62985 -24.92890 -23.79928 -23.22759 -22.31536 -21.29601 -20.22983 -20.02391 -19.64145 -17.89561 -17.14540 -16.96983 -16.70224 -16.55235 -16.12036 -15.74165 -15.52864 -15.15532 -14.86821 -14.62038 -14.05185 -13.81967 -13.70636 -13.55123 -13.37304 -13.09218 -13.05016 -12.93464 -12.77374 -12.58250 -12.21617 -11.97086 -11.71484 -11.36796 -11.30078 -11.07444 -10.84161 -10.67164 -10.55583 -10.45193 -10.34826 -10.13786 -9.95715 -9.84006 -9.66645 -9.11538 -8.85549 -8.74545 -6.90092 -5.74941 -3.03344 0.74110 1.82156 2.28720 2.83188 2.91854 3.35178 3.45067 3.50805 3.53105 4.02878 4.07959 4.35952 4.45384 4.50479 4.57037 4.64140 4.77683 4.79210 4.83250 4.89184 5.03919 5.09339 5.22924 5.28881 5.40579 5.41416 5.49354 5.52764 5.57978 5.58861 5.65300 5.69164 5.78520 5.81504 5.87305 5.93054 6.03306 6.08490 6.23206 6.36412 6.36750 6.46579 6.69004 6.84656 6.88676 7.22990 7.72975 7.81999 8.44355 9.55391 10.13599 10.47992 11.48161 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.001998 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.192528 B =14012.455623 C =15026.679691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.128 4.128 15 C 0.103 3.897 16 N -0.609 5.609 17 C 0.613 3.387 18 O -0.516 6.516 19 C -0.058 4.058 20 O -0.163 6.163 21 C 0.011 3.989 22 C -0.238 4.238 23 C -0.085 4.085 24 C -0.088 4.088 25 C 0.063 3.937 26 O -0.379 6.379 27 C 0.136 3.864 28 C 0.110 3.890 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.212 0.788 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.734 -31.758 -3.270 32.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.166 4.166 15 C -0.020 4.020 16 N -0.342 5.342 17 C 0.401 3.599 18 O -0.394 6.394 19 C -0.109 4.109 20 O -0.059 6.059 21 C -0.059 4.059 22 C -0.240 4.240 23 C -0.088 4.088 24 C -0.125 4.125 25 C -0.014 4.014 26 O -0.297 6.297 27 C 0.059 3.941 28 C -0.011 4.011 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.228 0.772 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.124 0.876 46 H 0.104 0.896 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.152 -31.276 -3.641 32.290 hybrid contribution -0.008 0.873 0.324 0.931 sum 7.144 -30.404 -3.318 31.408 Atomic orbital electron populations 1.69672 1.05107 1.25495 1.58055 1.24754 0.95563 0.97742 1.03155 0.86106 0.78818 0.84072 0.77165 1.20534 1.21853 1.21890 1.19294 0.91096 0.84192 1.42283 0.91123 1.42375 1.05878 1.00098 1.89499 1.20686 0.93566 0.85574 0.97874 1.21686 0.98573 0.92367 1.02643 1.22354 0.96889 0.95064 0.97053 0.89571 1.22743 0.98152 0.94197 1.01507 1.22114 0.88822 0.95816 0.95237 1.48403 1.28138 1.08676 1.48934 1.16109 0.81138 0.83196 0.79461 1.90894 1.39032 1.64189 1.45304 1.21360 0.94993 0.90658 1.03898 1.84410 1.47261 1.15551 1.58723 1.23639 0.97066 0.85670 0.99503 1.21026 1.00752 0.96657 1.05559 1.20193 0.97890 0.91939 0.98820 1.20899 0.93336 0.98673 0.99588 1.22710 0.92503 0.85045 1.01151 1.87990 1.57851 1.47195 1.36707 1.21039 0.91566 0.91522 0.89974 1.22495 1.01870 0.78611 0.98105 0.93602 0.78326 0.96429 0.96232 0.91520 0.91182 0.89730 0.90101 0.91134 0.91112 0.77185 0.89024 0.88326 0.87945 0.92745 0.91482 0.87592 0.89648 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -18.87 5.60 -59.91 -0.34 -19.21 16 10 C 0.15 3.00 6.11 -4.04 -0.02 2.98 16 11 C -0.11 -1.73 4.84 -26.74 -0.13 -1.86 16 12 C -0.09 -1.13 3.08 -88.47 -0.27 -1.41 16 13 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.13 -1.21 6.42 -24.89 -0.16 -1.37 16 15 C 0.10 1.00 5.55 -3.06 -0.02 0.98 16 16 N -0.61 -7.72 3.33 -172.06 -0.57 -8.30 16 17 C 0.61 8.65 7.82 -12.86 -0.10 8.55 16 18 O -0.52 -8.66 15.89 5.20 0.08 -8.58 16 19 C -0.06 -0.70 6.93 -37.27 -0.26 -0.95 16 20 O -0.16 -1.58 8.33 2.32 0.02 -1.56 16 21 C 0.01 0.07 12.06 29.21 0.35 0.43 16 22 C -0.24 -2.03 6.04 -105.01 -0.63 -2.67 16 23 C -0.09 -0.95 6.02 -104.59 -0.63 -1.58 16 24 C -0.09 -0.89 5.71 -27.53 -0.16 -1.04 16 25 C 0.06 0.50 6.75 37.51 0.25 0.75 16 26 O -0.38 -3.46 10.70 -35.23 -0.38 -3.84 16 27 C 0.14 0.91 7.27 36.03 0.26 1.17 16 28 C 0.11 1.48 5.57 -2.52 -0.01 1.47 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.40 7.46 -51.93 -0.39 0.01 16 33 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 37 H 0.07 0.64 7.81 -51.93 -0.41 0.24 16 38 H 0.07 0.63 7.67 -51.93 -0.40 0.24 16 39 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 1.04 7.63 -51.93 -0.40 0.65 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 1.26 7.96 -51.93 -0.41 0.84 16 47 H 0.08 1.07 8.00 -51.93 -0.42 0.65 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -34.96 381.18 -8.85 -43.81 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.34 Total: 4.12 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.78 Total: -2.07 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.18 Total: -55.38 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.28 Total: -13.97 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.96 -8.85 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717092195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.857 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.97 seconds