Wall clock time and date at job start Tue Mar 31 2020 20:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00415 * 2 1 4 4 H 1.48497 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47105 * 299.99648 * 3 2 1 6 6 H 1.48501 * 109.47106 * 59.99795 * 3 2 1 7 7 C 1.38816 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99841 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00284 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47095 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47051 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.88631 * 57.42858 * 12 11 10 14 14 C 1.55162 * 111.00512 * 181.35121 * 12 11 10 15 15 C 1.54334 * 103.01925 * 153.38238 * 14 12 11 16 16 N 1.47018 * 107.27067 * 338.13892 * 15 14 12 17 17 C 1.34774 * 125.65543 * 178.85142 * 16 15 14 18 18 O 1.21690 * 120.00761 * 179.69262 * 17 16 15 19 19 C 1.46657 * 119.99586 * 359.69049 * 17 16 15 20 20 O 1.35396 * 126.11757 * 359.97438 * 19 17 16 21 21 C 1.34402 * 109.47846 * 179.81530 * 20 19 17 22 22 C 1.33902 * 108.55725 * 0.25943 * 21 20 19 23 23 C 1.35188 * 126.11870 * 180.02562 * 19 17 16 24 24 C 1.50712 * 130.57963 * 0.12945 * 23 19 17 25 25 C 1.53672 * 107.44455 * 164.19305 * 24 23 19 26 26 O 1.42904 * 109.97938 * 48.25721 * 25 24 23 27 27 C 1.43512 * 114.77147 * 287.64036 * 26 25 24 28 28 C 1.47433 * 108.70019 * 358.58891 * 16 15 14 29 29 H 0.97004 * 119.99536 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99456 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47139 * 59.99837 * 10 9 7 32 32 H 1.08997 * 109.46576 * 300.00004 * 10 9 7 33 33 H 1.09003 * 109.47257 * 59.99929 * 11 10 9 34 34 H 1.08997 * 109.47441 * 299.99510 * 11 10 9 35 35 H 1.09002 * 110.71492 * 271.93679 * 14 12 11 36 36 H 1.08995 * 110.71815 * 35.03774 * 14 12 11 37 37 H 1.08994 * 109.98878 * 218.66215 * 15 14 12 38 38 H 1.09004 * 109.77934 * 97.50019 * 15 14 12 39 39 H 1.07992 * 125.72635 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.86347 * 283.67991 * 24 23 19 41 41 H 1.09003 * 109.86487 * 44.63346 * 24 23 19 42 42 H 1.09002 * 109.38880 * 168.40705 * 25 24 23 43 43 H 1.09000 * 109.39053 * 288.10136 * 25 24 23 44 44 H 1.09003 * 109.83069 * 291.97904 * 27 26 25 45 45 H 1.08997 * 109.82678 * 171.04753 * 27 26 25 46 46 H 1.08992 * 110.36661 * 143.19251 * 28 16 15 47 47 H 1.09000 * 110.36504 * 265.51848 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0021 12 6 1.8285 -6.1447 0.0026 13 1 2.4975 -6.2069 0.8609 14 6 0.8524 -7.3504 -0.0311 15 6 1.6921 -8.4589 -0.7005 16 7 2.7623 -7.7969 -1.4606 17 6 3.7233 -8.4208 -2.1704 18 8 4.5589 -7.7685 -2.7679 19 6 3.7618 -9.8859 -2.2227 20 8 2.8992 -10.7294 -1.6081 21 6 3.2416 -11.9996 -1.8835 22 6 4.3257 -11.9879 -2.6694 23 6 4.6655 -10.6359 -2.8923 24 6 5.8435 -10.2276 -3.7390 25 6 6.7353 -11.4666 -3.9158 26 8 5.9405 -12.5887 -4.3048 27 6 5.1118 -13.1281 -3.2646 28 6 2.6065 -6.3373 -1.3230 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.6838 -3.7143 0.8921 32 1 2.6852 -3.7150 -0.8878 33 1 0.4372 -4.7626 -0.8882 34 1 0.4366 -4.7614 0.8918 35 1 0.5622 -7.6400 0.9789 36 1 -0.0268 -7.1180 -0.6319 37 1 1.0667 -9.0446 -1.3741 38 1 2.1249 -9.1055 0.0629 39 1 2.7306 -12.8818 -1.5274 40 1 5.4972 -9.8787 -4.7119 41 1 6.4022 -9.4361 -3.2394 42 1 7.4820 -11.2682 -4.6847 43 1 7.2378 -11.6881 -2.9742 44 1 5.7343 -13.5885 -2.4972 45 1 4.4299 -13.8689 -3.6820 46 1 3.5824 -5.8556 -1.2635 47 1 2.0349 -5.9363 -2.1600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717092195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:31 Heat of formation + Delta-G solvation = -77.429163 kcal Electronic energy + Delta-G solvation = -28345.066128 eV Core-core repulsion = 24300.680724 eV Total energy + Delta-G solvation = -4044.385404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -43.91298 -41.06658 -39.57296 -38.98804 -36.88942 -34.81408 -34.49794 -33.14255 -32.71309 -30.79008 -30.53333 -28.54598 -27.20323 -26.28645 -24.92579 -24.41143 -23.26524 -22.63479 -21.29618 -20.76978 -20.49753 -19.17193 -18.72472 -17.78292 -17.49526 -17.40571 -16.90961 -16.66272 -16.56883 -16.18519 -15.94742 -15.82607 -15.37408 -15.22793 -14.99309 -14.61005 -14.46442 -14.27717 -14.08576 -13.83570 -13.69169 -13.41124 -13.23707 -13.02963 -12.99373 -12.85655 -12.60180 -12.35996 -12.14693 -12.02307 -11.94597 -11.73799 -11.60536 -11.51178 -11.43513 -10.95288 -10.84095 -10.54673 -9.96788 -9.59130 -9.01896 -7.97813 -5.26549 -0.07284 1.18070 1.45643 1.46508 1.47224 1.56867 1.93909 1.99281 2.54098 2.80177 3.27628 3.35748 3.39519 3.54965 3.61199 3.74678 3.76817 3.90794 4.13538 4.15614 4.23261 4.26208 4.29432 4.33655 4.45718 4.49582 4.53173 4.58514 4.69073 4.72738 4.76107 4.77803 4.80669 4.87892 4.91429 4.93901 5.01950 5.05718 5.11171 5.22763 5.27291 5.36127 5.44095 5.47947 5.74881 6.12279 6.25620 6.26617 6.79766 7.31475 8.07748 8.31197 9.25864 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.001998 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.192528 B =14012.455623 C =15026.679691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.748 5.748 10 C 0.147 3.853 11 C -0.099 4.099 12 C -0.084 4.084 13 H 0.091 0.909 14 C -0.117 4.117 15 C 0.103 3.897 16 N -0.610 5.610 17 C 0.605 3.395 18 O -0.561 6.561 19 C -0.088 4.088 20 O -0.165 6.165 21 C 0.038 3.962 22 C -0.255 4.255 23 C -0.097 4.097 24 C -0.091 4.091 25 C 0.068 3.932 26 O -0.398 6.398 27 C 0.133 3.867 28 C 0.109 3.891 29 H 0.252 0.748 30 H 0.375 0.625 31 H 0.019 0.981 32 H 0.014 0.986 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.263 0.737 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.130 0.870 46 H 0.063 0.937 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 -34.676 -2.289 35.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.090 0.910 9 N -0.390 5.390 10 C 0.021 3.979 11 C -0.137 4.137 12 C -0.103 4.103 13 H 0.110 0.890 14 C -0.155 4.155 15 C -0.018 4.018 16 N -0.341 5.341 17 C 0.395 3.605 18 O -0.442 6.442 19 C -0.139 4.139 20 O -0.061 6.061 21 C -0.031 4.031 22 C -0.257 4.257 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.009 4.009 26 O -0.316 6.316 27 C 0.057 3.943 28 C -0.013 4.013 29 H 0.061 0.939 30 H 0.207 0.793 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.279 0.721 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.148 0.852 46 H 0.081 0.919 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.866 -34.237 -2.641 35.018 hybrid contribution 0.096 1.660 0.007 1.662 sum 6.961 -32.577 -2.634 33.417 Atomic orbital electron populations 1.69814 1.06505 1.26079 1.59469 1.25590 0.96514 1.01144 1.03658 0.85064 0.78112 0.79704 0.76835 1.19306 1.21886 1.21673 1.19666 0.91435 0.85566 1.41255 0.91005 1.42600 1.05735 1.01303 1.89410 1.20868 0.94443 0.85235 0.97345 1.21517 0.97537 0.91857 1.02826 1.22210 0.97257 0.94647 0.96223 0.89035 1.22744 0.97311 0.92253 1.03144 1.22293 0.88113 0.95958 0.95447 1.48491 1.28515 1.08358 1.48780 1.16469 0.80769 0.84296 0.78970 1.90850 1.40704 1.65473 1.47177 1.20928 0.96778 0.89881 1.06358 1.84391 1.46775 1.16401 1.58540 1.24656 0.95797 0.85638 0.96970 1.21332 1.01861 0.95858 1.06630 1.20548 0.97596 0.93589 0.98241 1.20899 0.93758 0.99551 0.98619 1.22720 0.92088 0.83846 1.02228 1.87960 1.58305 1.47200 1.38182 1.21346 0.91805 0.91080 0.90103 1.22388 1.00764 0.79461 0.98683 0.93900 0.79276 0.96340 0.96816 0.91753 0.90505 0.87130 0.89581 0.90013 0.89720 0.72117 0.90453 0.89740 0.86602 0.91670 0.89534 0.85249 0.91869 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 47.22 29.55 68.60 2.03 49.24 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -39.01 5.60 -343.47 -1.92 -40.94 16 10 C 0.15 5.95 6.11 86.38 0.53 6.48 16 11 C -0.10 -2.94 4.84 30.59 0.15 -2.79 16 12 C -0.08 -1.94 3.08 -9.40 -0.03 -1.97 16 13 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 14 C -0.12 -1.90 6.42 31.79 0.20 -1.70 16 15 C 0.10 1.80 5.55 86.73 0.48 2.28 16 16 N -0.61 -15.55 3.33 -816.50 -2.72 -18.26 16 17 C 0.60 17.79 7.82 86.44 0.68 18.46 16 18 O -0.56 -20.30 15.89 -4.32 -0.07 -20.37 16 19 C -0.09 -2.12 6.93 23.77 0.16 -1.95 16 20 O -0.16 -2.81 8.33 -14.61 -0.12 -2.93 16 21 C 0.04 0.39 12.06 66.83 0.81 1.19 16 22 C -0.26 -3.74 6.04 -20.11 -0.12 -3.87 16 23 C -0.10 -2.13 6.02 -19.84 -0.12 -2.25 16 24 C -0.09 -1.94 5.71 30.08 0.17 -1.76 16 25 C 0.07 1.04 6.75 72.21 0.49 1.52 16 26 O -0.40 -6.63 10.70 -148.98 -1.59 -8.23 16 27 C 0.13 1.38 7.27 71.25 0.52 1.90 16 28 C 0.11 3.01 5.57 86.85 0.48 3.49 16 29 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.38 20.45 7.67 -92.71 -0.71 19.74 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.01 0.58 7.46 -2.39 -0.02 0.56 16 33 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.36 8.04 -2.39 -0.02 1.34 16 37 H 0.08 1.28 7.81 -2.39 -0.02 1.26 16 38 H 0.08 1.28 7.67 -2.39 -0.02 1.26 16 39 H 0.26 -0.33 8.06 -2.91 -0.02 -0.36 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 41 H 0.08 1.98 7.63 -2.39 -0.02 1.97 16 42 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16 44 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 1.99 7.96 -2.39 -0.02 1.98 16 47 H 0.07 1.94 8.00 -2.39 -0.02 1.93 16 Total: -1.00 -78.38 381.18 1.86 -76.52 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.27 Total: 23.17 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 5.70 Total: 1.55 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -4.36 Total: -118.96 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.78 Total: -31.53 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -78.38 1.86 -76.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717092195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.906 kcal (2) G-P(sol) polarization free energy of solvation -78.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds