Wall clock time and date at job start Tue Mar 31 2020 21:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21272 * 120.00513 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99846 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47148 * 179.97438 * 18 16 15 20 20 H 1.08997 * 109.34114 * 305.31796 * 19 18 16 21 21 O 1.42725 * 109.34094 * 65.00274 * 19 18 16 22 22 C 1.43214 * 113.12188 * 172.01213 * 21 19 18 23 23 C 1.52967 * 108.47583 * 289.28116 * 22 21 19 24 24 C 1.50749 * 109.76434 * 49.16502 * 23 22 21 25 25 C 1.38597 * 118.76416 * 163.19328 * 24 23 22 26 26 C 1.38064 * 120.27901 * 179.79684 * 25 24 23 27 27 C 1.38260 * 119.86292 * 359.97438 * 26 25 24 28 28 C 1.38054 * 119.89450 * 0.10071 * 27 26 25 29 29 C 1.37897 * 121.35379 * 343.13781 * 24 23 22 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 33 33 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 34 34 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 35 35 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 36 36 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 37 37 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 38 38 H 1.08997 * 109.47068 * 300.00700 * 18 16 15 39 39 H 1.09008 * 109.46877 * 60.00083 * 18 16 15 40 40 H 1.08992 * 109.63393 * 48.97984 * 22 21 19 41 41 H 1.09004 * 109.63385 * 169.38413 * 22 21 19 42 42 H 1.09000 * 109.42230 * 169.24979 * 23 22 21 43 43 H 1.08994 * 109.42551 * 289.13335 * 23 22 21 44 44 H 1.08005 * 119.86321 * 359.79130 * 25 24 23 45 45 H 1.08000 * 120.06921 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.05460 * 180.11691 * 27 26 25 47 47 H 1.08000 * 119.85102 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 8 1.2283 -4.2995 -2.1697 14 6 1.1804 -4.7490 0.6220 15 7 0.7334 -4.3257 1.9514 16 6 -0.0559 -5.1342 2.6861 17 8 -0.3957 -6.2123 2.2470 18 6 -0.5162 -4.6985 4.0533 19 6 -1.3936 -5.7907 4.6682 20 1 -2.2084 -6.0270 3.9839 21 8 -0.6067 -6.9610 4.8883 22 6 -1.2992 -7.9734 5.6275 23 6 -1.4519 -7.4989 7.0737 24 6 -1.9984 -6.0941 7.0942 25 6 -2.5393 -5.6060 8.2732 26 6 -3.0448 -4.3224 8.3283 27 6 -3.0108 -3.5203 7.2027 28 6 -2.4736 -4.0062 6.0275 29 6 -1.9675 -5.2957 5.9703 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.9722 -3.2261 -1.8952 33 1 3.0428 -4.9390 -1.4164 34 1 1.3838 -4.5509 -3.0904 35 1 0.3131 -4.9201 -0.0155 36 1 1.7553 -5.6711 0.7087 37 1 1.0055 -3.4635 2.3028 38 1 0.3510 -4.5265 4.6909 39 1 -1.0916 -3.7767 3.9663 40 1 -2.2839 -8.1375 5.1899 41 1 -0.7277 -8.9013 5.6017 42 1 -2.1368 -8.1619 7.6023 43 1 -0.4793 -7.5157 7.5653 44 1 -2.5656 -6.2325 9.1526 45 1 -3.4651 -3.9454 9.2489 46 1 -3.4037 -2.5150 7.2428 47 1 -2.4478 -3.3791 5.1485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717782882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:31 Heat of formation + Delta-G solvation = -97.493925 kcal Electronic energy + Delta-G solvation = -28751.732925 eV Core-core repulsion = 24706.477448 eV Total energy + Delta-G solvation = -4045.255477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.62348 -39.10333 -37.57006 -37.01705 -34.84206 -33.81095 -33.39306 -32.33850 -31.35159 -30.10834 -28.84443 -28.01879 -25.40278 -24.14531 -23.84590 -23.50237 -21.90404 -20.17397 -20.06619 -19.66472 -17.63884 -17.44811 -16.67634 -16.56881 -16.40364 -15.80763 -15.65185 -15.44534 -14.83226 -14.63378 -14.36001 -14.18195 -13.93256 -13.65700 -13.46602 -13.39345 -13.20415 -12.97398 -12.87350 -12.48234 -12.38443 -12.18832 -11.95309 -11.78310 -11.47871 -11.30170 -11.04913 -10.88562 -10.84838 -10.71245 -10.52151 -10.07205 -9.79325 -9.66362 -9.44407 -9.31598 -8.98534 -8.91712 -8.74966 -8.45844 -7.03308 -5.82000 -3.11957 1.14397 1.19906 3.11238 3.38290 3.44355 3.46623 3.50251 3.68215 3.76184 4.45696 4.50872 4.53253 4.64174 4.75917 4.93111 4.95033 4.98412 5.10034 5.18076 5.23859 5.27930 5.38820 5.41842 5.48968 5.53054 5.55445 5.60958 5.67585 5.75362 5.82785 5.89833 5.91087 5.94443 6.06208 6.09111 6.27430 6.35219 6.39831 6.43194 6.54141 6.79050 6.81306 7.02833 7.14463 7.62843 8.07021 8.22607 8.35260 8.73480 9.47589 10.03333 10.40120 11.39655 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.002915 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.501632 B = 9604.509318 C =11491.075168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.065 0.935 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.120 3.880 15 N -0.716 5.716 16 C 0.513 3.487 17 O -0.543 6.543 18 C -0.134 4.134 19 C 0.150 3.850 20 H 0.080 0.920 21 O -0.355 6.355 22 C 0.060 3.940 23 C -0.116 4.116 24 C -0.073 4.073 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.108 4.108 29 C -0.112 4.112 30 H 0.255 0.745 31 H 0.389 0.611 32 H 0.048 0.952 33 H 0.027 0.973 34 H 0.363 0.637 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.408 0.592 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 -12.964 14.314 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.205 4.205 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.004 4.004 15 N -0.368 5.368 16 C 0.299 3.701 17 O -0.421 6.421 18 C -0.174 4.174 19 C 0.092 3.908 20 H 0.098 0.902 21 O -0.273 6.273 22 C -0.017 4.017 23 C -0.153 4.153 24 C -0.073 4.073 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.139 4.139 28 C -0.126 4.126 29 C -0.113 4.113 30 H 0.065 0.935 31 H 0.223 0.777 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.208 0.792 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.244 0.756 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.413 -13.448 14.512 20.077 hybrid contribution 0.354 1.470 -0.293 1.540 sum -3.059 -11.978 14.218 18.841 Atomic orbital electron populations 1.69691 1.05061 1.25553 1.57026 1.24741 0.95461 0.97621 1.02719 0.86159 0.78763 0.84251 0.77192 1.20610 1.21926 1.21867 1.19269 0.90940 0.84067 1.43408 0.91173 1.42376 1.06062 0.99056 1.87992 1.20594 0.95078 0.87065 0.91848 0.91716 1.23031 0.86499 0.97203 0.95453 1.86574 1.32177 1.91681 1.25883 1.21497 0.99354 0.96663 0.82895 1.45976 1.51026 1.21680 1.18073 1.20290 0.78687 0.84630 0.86528 1.90672 1.56770 1.22191 1.72464 1.21795 1.01930 0.98772 0.94909 1.20520 0.93288 0.85548 0.91486 0.90240 1.88170 1.39419 1.25239 1.74520 1.22560 0.97849 0.91621 0.89683 1.21162 1.01833 0.93194 0.99095 1.19505 0.98715 0.95967 0.93091 1.21041 0.99515 0.96178 0.97192 1.21115 0.99880 0.94232 0.98500 1.21138 0.99757 0.99981 0.93009 1.21185 0.97964 0.94828 0.98655 1.20279 1.00283 0.94853 0.95837 0.93523 0.77675 0.93385 0.95538 0.79205 0.90768 0.92300 0.75583 0.88075 0.87152 0.92745 0.88407 0.89924 0.89736 0.86143 0.86080 0.85763 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -6.42 9.93 -15.06 -0.15 -6.57 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.71 -16.91 4.51 -53.43 -0.24 -17.15 16 10 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16 11 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 12 C 0.06 1.04 6.86 37.16 0.25 1.30 16 13 O -0.56 -10.11 12.64 -35.23 -0.45 -10.56 16 14 C 0.12 2.19 5.12 -4.04 -0.02 2.17 16 15 N -0.72 -12.41 5.39 -60.29 -0.32 -12.73 16 16 C 0.51 8.83 7.71 -10.98 -0.08 8.75 16 17 O -0.54 -11.02 15.41 -8.99 -0.14 -11.16 16 18 C -0.13 -1.83 5.11 -27.88 -0.14 -1.98 16 19 C 0.15 2.04 2.28 -27.90 -0.06 1.98 16 20 H 0.08 1.16 7.94 -51.93 -0.41 0.75 16 21 O -0.36 -5.14 9.66 -49.79 -0.48 -5.62 16 22 C 0.06 0.64 6.85 37.14 0.25 0.90 16 23 C -0.12 -1.06 6.00 -27.88 -0.17 -1.23 16 24 C -0.07 -0.80 5.78 -104.59 -0.60 -1.40 16 25 C -0.12 -1.16 9.67 -39.51 -0.38 -1.55 16 26 C -0.12 -1.12 10.05 -39.64 -0.40 -1.51 16 27 C -0.12 -1.22 10.05 -39.64 -0.40 -1.62 16 28 C -0.11 -1.22 9.08 -39.50 -0.36 -1.58 16 29 C -0.11 -1.36 5.46 -104.62 -0.57 -1.93 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.39 10.23 7.80 -40.82 -0.32 9.91 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.36 4.74 9.12 45.56 0.42 5.15 16 35 H 0.07 1.52 7.39 -51.93 -0.38 1.14 16 36 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 37 H 0.41 7.01 8.14 -40.82 -0.33 6.68 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.11 1.34 6.29 -51.92 -0.33 1.01 16 40 H 0.05 0.57 8.07 -51.93 -0.42 0.15 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.13 1.35 6.45 -52.49 -0.34 1.01 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -33.46 386.40 -9.54 -42.99 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -6.31 Total: 19.76 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -3.12 Total: -1.64 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.16 Total: -56.14 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -1.06 Total: -27.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.46 -9.54 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717782882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.501 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds