Wall clock time and date at job start Tue Mar 31 2020 21:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21272 * 120.00513 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99846 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47148 * 179.97438 * 18 16 15 20 20 H 1.08997 * 109.34114 * 305.31796 * 19 18 16 21 21 O 1.42725 * 109.34094 * 65.00274 * 19 18 16 22 22 C 1.43214 * 113.12188 * 172.01213 * 21 19 18 23 23 C 1.52967 * 108.47583 * 289.28116 * 22 21 19 24 24 C 1.50749 * 109.76434 * 49.16502 * 23 22 21 25 25 C 1.38597 * 118.76416 * 163.19328 * 24 23 22 26 26 C 1.38064 * 120.27901 * 179.79684 * 25 24 23 27 27 C 1.38260 * 119.86292 * 359.97438 * 26 25 24 28 28 C 1.38054 * 119.89450 * 0.10071 * 27 26 25 29 29 C 1.37897 * 121.35379 * 343.13781 * 24 23 22 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 33 33 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 34 34 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 35 35 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 36 36 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 37 37 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 38 38 H 1.08997 * 109.47068 * 300.00700 * 18 16 15 39 39 H 1.09008 * 109.46877 * 60.00083 * 18 16 15 40 40 H 1.08992 * 109.63393 * 48.97984 * 22 21 19 41 41 H 1.09004 * 109.63385 * 169.38413 * 22 21 19 42 42 H 1.09000 * 109.42230 * 169.24979 * 23 22 21 43 43 H 1.08994 * 109.42551 * 289.13335 * 23 22 21 44 44 H 1.08005 * 119.86321 * 359.79130 * 25 24 23 45 45 H 1.08000 * 120.06921 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.05460 * 180.11691 * 27 26 25 47 47 H 1.08000 * 119.85102 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 8 1.2283 -4.2995 -2.1697 14 6 1.1804 -4.7490 0.6220 15 7 0.7334 -4.3257 1.9514 16 6 -0.0559 -5.1342 2.6861 17 8 -0.3957 -6.2123 2.2470 18 6 -0.5162 -4.6985 4.0533 19 6 -1.3936 -5.7907 4.6682 20 1 -2.2084 -6.0270 3.9839 21 8 -0.6067 -6.9610 4.8883 22 6 -1.2992 -7.9734 5.6275 23 6 -1.4519 -7.4989 7.0737 24 6 -1.9984 -6.0941 7.0942 25 6 -2.5393 -5.6060 8.2732 26 6 -3.0448 -4.3224 8.3283 27 6 -3.0108 -3.5203 7.2027 28 6 -2.4736 -4.0062 6.0275 29 6 -1.9675 -5.2957 5.9703 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.9722 -3.2261 -1.8952 33 1 3.0428 -4.9390 -1.4164 34 1 1.3838 -4.5509 -3.0904 35 1 0.3131 -4.9201 -0.0155 36 1 1.7553 -5.6711 0.7087 37 1 1.0055 -3.4635 2.3028 38 1 0.3510 -4.5265 4.6909 39 1 -1.0916 -3.7767 3.9663 40 1 -2.2839 -8.1375 5.1899 41 1 -0.7277 -8.9013 5.6017 42 1 -2.1368 -8.1619 7.6023 43 1 -0.4793 -7.5157 7.5653 44 1 -2.5656 -6.2325 9.1526 45 1 -3.4651 -3.9454 9.2489 46 1 -3.4037 -2.5150 7.2428 47 1 -2.4478 -3.3791 5.1485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717782882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:30 Heat of formation + Delta-G solvation = -121.708759 kcal Electronic energy + Delta-G solvation = -28752.782959 eV Core-core repulsion = 24706.477448 eV Total energy + Delta-G solvation = -4046.305511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.56100 -40.42725 -38.67646 -38.32345 -36.37001 -35.13149 -34.73870 -33.29362 -33.01437 -31.05738 -30.18317 -29.31839 -26.69957 -25.65721 -25.00880 -24.63721 -22.81143 -21.61419 -21.04122 -20.98536 -19.41352 -18.47993 -18.15261 -17.81900 -17.48444 -17.03184 -16.83831 -16.43833 -16.19750 -16.00916 -15.56007 -15.35200 -15.22229 -14.94405 -14.77833 -14.57154 -14.45561 -14.20555 -14.05844 -13.73355 -13.44809 -13.29498 -13.05754 -12.99226 -12.74186 -12.65007 -12.62677 -12.37320 -12.20027 -11.89539 -11.82623 -11.72128 -11.53889 -11.04329 -10.82730 -10.71368 -10.54937 -9.94219 -9.71546 -9.55178 -8.99125 -7.88825 -5.17890 0.34809 0.43158 1.50505 1.51773 1.60595 1.72901 2.30388 2.58882 2.72103 2.86495 3.43282 3.55166 3.62496 3.66786 3.82788 3.91528 3.91828 4.00130 4.08283 4.13190 4.23476 4.29278 4.32253 4.43389 4.46821 4.57431 4.60392 4.62312 4.63786 4.68184 4.81730 4.89429 4.90801 4.98380 5.01259 5.07470 5.17393 5.24768 5.51177 5.54572 5.59279 5.59626 5.62229 6.06795 6.20235 6.30177 6.65634 7.07099 7.33110 7.38418 8.10362 8.36368 9.34082 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.002915 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.501632 B = 9604.509318 C =11491.075168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.302 1.302 6 H -0.295 1.295 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.722 5.722 10 C 0.162 3.838 11 H 0.078 0.922 12 C 0.064 3.936 13 O -0.584 6.584 14 C 0.132 3.868 15 N -0.714 5.714 16 C 0.511 3.489 17 O -0.576 6.576 18 C -0.126 4.126 19 C 0.155 3.845 20 H 0.058 0.942 21 O -0.382 6.382 22 C 0.051 3.949 23 C -0.109 4.109 24 C -0.086 4.086 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.130 4.130 28 C -0.123 4.123 29 C -0.131 4.131 30 H 0.248 0.752 31 H 0.373 0.627 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.385 0.615 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.051 0.949 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.140 0.860 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 -13.437 16.127 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.230 1.230 6 H -0.222 1.222 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.362 5.362 10 C 0.052 3.948 11 H 0.096 0.904 12 C -0.017 4.017 13 O -0.390 6.390 14 C 0.007 3.993 15 N -0.366 5.366 16 C 0.298 3.702 17 O -0.456 6.456 18 C -0.166 4.166 19 C 0.096 3.904 20 H 0.076 0.924 21 O -0.301 6.301 22 C -0.025 4.025 23 C -0.146 4.146 24 C -0.086 4.086 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.147 4.147 28 C -0.141 4.141 29 C -0.131 4.131 30 H 0.057 0.943 31 H 0.205 0.795 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.108 0.892 44 H 0.165 0.835 45 H 0.165 0.835 46 H 0.158 0.842 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.353 -13.956 16.315 21.599 hybrid contribution 0.045 1.491 -0.865 1.725 sum -2.308 -12.465 15.450 19.985 Atomic orbital electron populations 1.69849 1.06577 1.25662 1.59497 1.25466 0.96161 1.00735 1.03966 0.85157 0.78387 0.80392 0.76264 1.18924 1.22969 1.22246 1.19642 0.91456 0.84824 1.40730 0.90160 1.42472 1.05388 1.00159 1.88159 1.20833 0.95087 0.85386 0.93461 0.90380 1.22879 0.86538 0.98522 0.93722 1.86526 1.32878 1.91855 1.27779 1.21317 0.98259 0.96894 0.82846 1.45989 1.51063 1.21716 1.17794 1.20876 0.77850 0.83988 0.87485 1.90648 1.57881 1.23651 1.73458 1.21801 1.02588 0.99426 0.92772 1.20360 0.92450 0.85423 0.92138 0.92417 1.88113 1.40498 1.26092 1.75402 1.22807 0.97742 0.91480 0.90504 1.21158 1.02702 0.92721 0.98009 1.19806 0.98882 0.96707 0.93232 1.21366 0.98591 0.96650 0.97457 1.21490 0.98967 0.94040 0.99158 1.21406 0.99530 1.00960 0.92841 1.21295 0.98649 0.94776 0.99391 1.20205 1.01679 0.95625 0.95606 0.94295 0.79526 0.94450 0.91765 0.76703 0.93339 0.90948 0.75406 0.86856 0.85915 0.93087 0.86859 0.87347 0.89169 0.83534 0.83450 0.84206 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.32 13.06 21.65 0.28 -57.04 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.97 44.42 29.55 68.60 2.03 46.45 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 7 C -0.23 -12.13 9.93 84.03 0.83 -11.29 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.72 -34.22 4.51 -322.94 -1.46 -35.68 16 10 C 0.16 6.03 2.84 44.99 0.13 6.16 16 11 H 0.08 2.72 8.08 -2.39 -0.02 2.70 16 12 C 0.06 2.14 6.86 71.98 0.49 2.63 16 13 O -0.58 -20.57 12.64 -148.98 -1.88 -22.46 16 14 C 0.13 4.77 5.12 86.38 0.44 5.21 16 15 N -0.71 -24.97 5.39 -463.07 -2.49 -27.46 16 16 C 0.51 17.96 7.71 87.66 0.68 18.63 16 17 O -0.58 -24.05 15.41 10.92 0.17 -23.88 16 18 C -0.13 -3.52 5.11 29.85 0.15 -3.37 16 19 C 0.15 4.33 2.28 29.84 0.07 4.40 16 20 H 0.06 1.81 7.94 -2.39 -0.02 1.79 16 21 O -0.38 -11.20 9.66 -135.06 -1.30 -12.51 16 22 C 0.05 1.07 6.85 71.97 0.49 1.56 16 23 C -0.11 -1.81 6.00 29.85 0.18 -1.63 16 24 C -0.09 -1.78 5.78 -19.84 -0.11 -1.89 16 25 C -0.12 -2.05 9.67 22.31 0.22 -1.83 16 26 C -0.12 -1.92 10.05 22.23 0.22 -1.70 16 27 C -0.13 -2.43 10.05 22.23 0.22 -2.21 16 28 C -0.12 -2.75 9.08 22.32 0.20 -2.55 16 29 C -0.13 -3.16 5.46 -19.86 -0.11 -3.27 16 30 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.39 9.53 9.12 -74.06 -0.68 8.85 16 35 H 0.05 2.02 7.39 -2.39 -0.02 2.01 16 36 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.41 14.14 8.14 -92.71 -0.75 13.39 16 38 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.12 3.06 6.29 -2.38 -0.01 3.05 16 40 H 0.05 1.07 8.07 -2.39 -0.02 1.05 16 41 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 46 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 47 H 0.13 2.74 6.45 -2.91 -0.02 2.72 16 Total: -1.00 -72.59 386.40 -1.23 -73.82 By element: Atomic # 1 Polarization: 54.44 SS G_CDS: -1.14 Total: 53.30 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.58 Total: 5.46 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -3.67 Total: -120.18 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -3.02 Total: -58.85 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -72.59 -1.23 -73.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717782882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.893 kcal (2) G-P(sol) polarization free energy of solvation -72.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds