Wall clock time and date at job start Tue Mar 31 2020 21:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99851 * 2 1 4 4 H 1.48495 * 109.47399 * 270.00082 * 3 2 1 5 5 H 1.48507 * 109.47010 * 30.00220 * 3 2 1 6 6 H 1.48503 * 109.47233 * 149.99791 * 3 2 1 7 7 C 1.38811 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99704 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00487 * 179.97438 * 7 2 1 10 10 C 1.46491 * 120.00454 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47438 * 325.00364 * 10 9 7 12 12 C 1.53001 * 109.46969 * 85.00177 * 10 9 7 13 13 O 1.42898 * 109.46923 * 65.00368 * 12 10 9 14 14 C 1.53003 * 109.47746 * 205.00333 * 10 9 7 15 15 N 1.46499 * 109.46708 * 54.99751 * 14 10 9 16 16 C 1.34784 * 119.99893 * 180.02562 * 15 14 10 17 17 O 1.21283 * 119.99649 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99774 * 179.72962 * 16 15 14 19 19 C 1.53003 * 109.46624 * 180.02562 * 18 16 15 20 20 H 1.08999 * 109.33880 * 305.31310 * 19 18 16 21 21 O 1.42719 * 109.34409 * 64.99950 * 19 18 16 22 22 C 1.43212 * 113.12105 * 172.01120 * 21 19 18 23 23 C 1.52969 * 108.47819 * 289.28391 * 22 21 19 24 24 C 1.50736 * 109.76743 * 49.16058 * 23 22 21 25 25 C 1.38594 * 118.76487 * 163.19406 * 24 23 22 26 26 C 1.38071 * 120.28025 * 179.79900 * 25 24 23 27 27 C 1.38262 * 119.85856 * 359.97438 * 26 25 24 28 28 C 1.38055 * 119.89635 * 0.09948 * 27 26 25 29 29 C 1.37903 * 121.35322 * 343.14332 * 24 23 22 30 30 H 0.96998 * 119.99934 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99742 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47065 * 185.00174 * 12 10 9 33 33 H 1.08996 * 109.47443 * 304.99951 * 12 10 9 34 34 H 0.96706 * 113.99610 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.46692 * 295.00253 * 14 10 9 36 36 H 1.08994 * 109.47584 * 175.00117 * 14 10 9 37 37 H 0.97005 * 120.00261 * 0.02562 * 15 14 10 38 38 H 1.09001 * 109.46809 * 299.99238 * 18 16 15 39 39 H 1.08993 * 109.47525 * 59.99679 * 18 16 15 40 40 H 1.08998 * 109.64112 * 48.98067 * 22 21 19 41 41 H 1.09001 * 109.63858 * 169.38105 * 22 21 19 42 42 H 1.08999 * 109.42107 * 169.25312 * 23 22 21 43 43 H 1.08999 * 109.42248 * 289.12525 * 23 22 21 44 44 H 1.07996 * 119.86296 * 359.79548 * 25 24 23 45 45 H 1.07997 * 120.07402 * 180.02562 * 26 25 24 46 46 H 1.08004 * 120.05158 * 180.11775 * 27 26 25 47 47 H 1.08001 * 119.84456 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5651 -3.2062 0.5887 12 6 4.2578 -2.9755 -1.4380 13 8 5.0737 -2.0678 -2.1813 14 6 5.4996 -2.2586 0.6080 15 7 5.3625 -1.6632 1.9395 16 6 6.4607 -1.3850 2.6697 17 8 7.5625 -1.6271 2.2241 18 6 6.3199 -0.7669 4.0369 19 6 7.7073 -0.5549 4.6460 20 1 8.2507 -1.4998 4.6439 21 8 8.4234 0.4040 3.8685 22 6 9.6628 0.8004 4.4666 23 6 9.3557 1.6553 5.6974 24 6 8.3325 0.9599 6.5586 25 6 8.1731 1.3746 7.8714 26 6 7.2422 0.7624 8.6868 27 6 6.4653 -0.2685 8.1914 28 6 6.6246 -0.6832 6.8843 29 6 7.5605 -0.0707 6.0651 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 -0.0007 32 1 4.7237 -3.9609 -1.4315 33 1 3.2735 -3.0421 -1.9013 34 1 5.2095 -2.3258 -3.1034 35 1 6.0785 -1.5913 -0.0305 36 1 6.0111 -3.2176 0.6897 37 1 4.4813 -1.4693 2.2957 38 1 5.8107 0.1930 3.9509 39 1 5.7389 -1.4303 4.6774 40 1 10.2246 -0.0843 4.7661 41 1 10.2463 1.3796 3.7509 42 1 10.2701 1.8062 6.2712 43 1 8.9640 2.6213 5.3791 44 1 8.7797 2.1801 8.2583 45 1 7.1204 1.0885 9.7091 46 1 5.7348 -0.7483 8.8259 47 1 6.0176 -1.4888 6.4983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717782884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:00 Heat of formation + Delta-G solvation = -93.637071 kcal Electronic energy + Delta-G solvation = -28904.001950 eV Core-core repulsion = 24858.913719 eV Total energy + Delta-G solvation = -4045.088231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.70040 -39.23767 -37.65118 -37.16055 -34.98611 -33.89132 -33.48989 -32.40761 -31.51435 -30.22618 -29.15370 -28.35266 -25.51420 -24.20557 -23.87269 -23.23414 -21.97992 -20.24330 -20.17420 -19.80901 -17.95840 -17.52697 -16.89042 -16.74076 -16.46002 -15.91322 -15.73499 -15.44663 -15.04337 -14.58950 -14.51974 -14.30475 -13.94043 -13.79979 -13.54793 -13.34208 -13.25782 -13.13229 -12.83278 -12.57107 -12.48838 -12.37544 -12.17760 -11.93741 -11.59685 -11.45080 -11.12191 -10.97408 -10.84652 -10.76721 -10.67745 -10.10624 -9.73352 -9.64872 -9.56667 -9.42395 -9.00955 -8.98236 -8.82103 -8.61530 -7.34452 -5.83073 -3.19210 1.07148 1.12390 2.96767 3.37954 3.40869 3.43989 3.47006 3.57016 3.69467 4.39864 4.42980 4.56395 4.57274 4.68024 4.82882 4.86582 4.89715 5.03045 5.06935 5.17301 5.19560 5.23563 5.30137 5.35427 5.42886 5.45621 5.47390 5.60581 5.67310 5.75012 5.81475 5.84381 5.85662 5.94449 5.95354 6.19646 6.25628 6.26877 6.34243 6.40082 6.65015 6.73683 6.87735 7.09258 7.90644 7.91633 8.12480 8.36039 8.58933 9.14341 9.87106 10.07416 11.34568 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.003049 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.067552 B = 9180.473389 C =10141.700500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.010 3.990 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.090 0.910 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.074 0.926 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.117 3.883 15 N -0.720 5.720 16 C 0.512 3.488 17 O -0.540 6.540 18 C -0.136 4.136 19 C 0.150 3.850 20 H 0.079 0.921 21 O -0.354 6.354 22 C 0.060 3.940 23 C -0.117 4.117 24 C -0.071 4.071 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.122 4.122 28 C -0.110 4.110 29 C -0.113 4.113 30 H 0.260 0.740 31 H 0.366 0.634 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.366 0.634 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.408 0.592 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.468 -1.911 14.548 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.186 4.186 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.108 0.892 9 N -0.382 5.382 10 C 0.061 3.939 11 H 0.091 0.909 12 C -0.022 4.022 13 O -0.368 6.368 14 C -0.008 4.008 15 N -0.372 5.372 16 C 0.298 3.702 17 O -0.417 6.417 18 C -0.176 4.176 19 C 0.092 3.908 20 H 0.097 0.903 21 O -0.272 6.272 22 C -0.017 4.017 23 C -0.154 4.154 24 C -0.071 4.071 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.140 4.140 28 C -0.128 4.128 29 C -0.113 4.113 30 H 0.070 0.930 31 H 0.200 0.800 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.211 0.789 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.244 0.756 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 17.927 -1.761 14.629 23.205 hybrid contribution -0.039 0.987 -0.136 0.997 sum 17.888 -0.774 14.493 23.035 Atomic orbital electron populations 1.69699 1.05140 1.25962 1.57026 1.24634 0.95147 0.97215 1.01605 0.86575 0.79164 0.84863 0.78037 1.21043 1.21859 1.20171 1.19042 0.80449 0.94676 1.43812 0.89188 1.42729 1.03848 1.01858 1.89738 1.20564 0.90583 0.90532 0.92216 0.90867 1.22996 0.93800 0.90410 0.95003 1.86529 1.72376 1.51976 1.25933 1.21556 0.98139 0.98235 0.82822 1.46027 1.09446 1.63631 1.18126 1.20330 0.84577 0.78429 0.86866 1.90682 1.25727 1.53104 1.72222 1.21811 0.97005 1.03664 0.95104 1.20502 0.92495 0.92289 0.85525 0.90328 1.88201 1.33186 1.60444 1.45410 1.22569 0.86756 0.97829 0.94528 1.21174 0.97838 0.99883 0.96512 1.19520 0.97369 0.95815 0.94406 1.21061 0.99187 1.00224 0.93316 1.21123 0.96198 0.96592 0.99741 1.21119 0.99669 0.97570 0.95595 1.21119 0.97714 1.00027 0.93899 1.20273 0.97268 0.97084 0.96698 0.92996 0.80021 0.95148 0.92819 0.78905 0.90740 0.91870 0.75628 0.87764 0.87375 0.92759 0.88315 0.89840 0.89609 0.86059 0.86018 0.85797 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.97 55.49 0.78 -27.64 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 3 Si 0.88 22.17 27.73 -169.99 -4.71 17.46 16 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 7 C -0.25 -6.67 10.41 -15.06 -0.16 -6.83 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.74 -16.67 4.31 -53.43 -0.23 -16.90 16 10 C 0.17 3.13 2.84 -67.93 -0.19 2.94 16 11 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 12 C 0.06 0.99 6.86 37.16 0.25 1.24 16 13 O -0.56 -9.58 12.64 -35.23 -0.45 -10.03 16 14 C 0.12 2.00 5.12 -4.04 -0.02 1.98 16 15 N -0.72 -11.77 5.39 -60.30 -0.32 -12.10 16 16 C 0.51 8.35 7.71 -10.98 -0.08 8.27 16 17 O -0.54 -10.45 15.40 -9.11 -0.14 -10.59 16 18 C -0.14 -1.75 5.11 -27.88 -0.14 -1.90 16 19 C 0.15 1.95 2.28 -27.90 -0.06 1.88 16 20 H 0.08 1.04 7.94 -51.93 -0.41 0.63 16 21 O -0.35 -5.19 9.65 -49.90 -0.48 -5.67 16 22 C 0.06 0.65 6.85 37.14 0.25 0.90 16 23 C -0.12 -1.08 6.00 -27.88 -0.17 -1.25 16 24 C -0.07 -0.76 5.78 -104.60 -0.60 -1.37 16 25 C -0.12 -1.11 9.67 -39.51 -0.38 -1.50 16 26 C -0.12 -1.04 10.05 -39.63 -0.40 -1.44 16 27 C -0.12 -1.11 10.05 -39.64 -0.40 -1.50 16 28 C -0.11 -1.11 9.08 -39.50 -0.36 -1.46 16 29 C -0.11 -1.30 5.46 -104.61 -0.57 -1.87 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.37 8.65 5.66 -40.82 -0.23 8.42 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.37 4.42 9.12 45.56 0.42 4.84 16 35 H 0.07 1.44 7.39 -51.93 -0.38 1.06 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 6.53 8.14 -40.82 -0.33 6.20 16 38 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.11 1.07 6.30 -51.93 -0.33 0.74 16 40 H 0.05 0.54 8.07 -51.93 -0.42 0.13 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 47 H 0.13 1.07 6.45 -52.49 -0.34 0.73 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -34.96 383.27 -9.18 -44.14 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -6.27 Total: 17.25 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.13 Total: -1.70 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.22 Total: -56.64 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -1.07 Total: -26.29 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.96 -9.18 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717782884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.495 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds