Wall clock time and date at job start Tue Mar 31 2020 21:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99851 * 2 1 4 4 H 1.48495 * 109.47399 * 270.00082 * 3 2 1 5 5 H 1.48507 * 109.47010 * 30.00220 * 3 2 1 6 6 H 1.48503 * 109.47233 * 149.99791 * 3 2 1 7 7 C 1.38811 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99704 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00487 * 179.97438 * 7 2 1 10 10 C 1.46491 * 120.00454 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47438 * 325.00364 * 10 9 7 12 12 C 1.53001 * 109.46969 * 85.00177 * 10 9 7 13 13 O 1.42898 * 109.46923 * 65.00368 * 12 10 9 14 14 C 1.53003 * 109.47746 * 205.00333 * 10 9 7 15 15 N 1.46499 * 109.46708 * 54.99751 * 14 10 9 16 16 C 1.34784 * 119.99893 * 180.02562 * 15 14 10 17 17 O 1.21283 * 119.99649 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99774 * 179.72962 * 16 15 14 19 19 C 1.53003 * 109.46624 * 180.02562 * 18 16 15 20 20 H 1.08999 * 109.33880 * 305.31310 * 19 18 16 21 21 O 1.42719 * 109.34409 * 64.99950 * 19 18 16 22 22 C 1.43212 * 113.12105 * 172.01120 * 21 19 18 23 23 C 1.52969 * 108.47819 * 289.28391 * 22 21 19 24 24 C 1.50736 * 109.76743 * 49.16058 * 23 22 21 25 25 C 1.38594 * 118.76487 * 163.19406 * 24 23 22 26 26 C 1.38071 * 120.28025 * 179.79900 * 25 24 23 27 27 C 1.38262 * 119.85856 * 359.97438 * 26 25 24 28 28 C 1.38055 * 119.89635 * 0.09948 * 27 26 25 29 29 C 1.37903 * 121.35322 * 343.14332 * 24 23 22 30 30 H 0.96998 * 119.99934 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99742 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47065 * 185.00174 * 12 10 9 33 33 H 1.08996 * 109.47443 * 304.99951 * 12 10 9 34 34 H 0.96706 * 113.99610 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.46692 * 295.00253 * 14 10 9 36 36 H 1.08994 * 109.47584 * 175.00117 * 14 10 9 37 37 H 0.97005 * 120.00261 * 0.02562 * 15 14 10 38 38 H 1.09001 * 109.46809 * 299.99238 * 18 16 15 39 39 H 1.08993 * 109.47525 * 59.99679 * 18 16 15 40 40 H 1.08998 * 109.64112 * 48.98067 * 22 21 19 41 41 H 1.09001 * 109.63858 * 169.38105 * 22 21 19 42 42 H 1.08999 * 109.42107 * 169.25312 * 23 22 21 43 43 H 1.08999 * 109.42248 * 289.12525 * 23 22 21 44 44 H 1.07996 * 119.86296 * 359.79548 * 25 24 23 45 45 H 1.07997 * 120.07402 * 180.02562 * 26 25 24 46 46 H 1.08004 * 120.05158 * 180.11775 * 27 26 25 47 47 H 1.08001 * 119.84456 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5651 -3.2062 0.5887 12 6 4.2578 -2.9755 -1.4380 13 8 5.0737 -2.0678 -2.1813 14 6 5.4996 -2.2586 0.6080 15 7 5.3625 -1.6632 1.9395 16 6 6.4607 -1.3850 2.6697 17 8 7.5625 -1.6271 2.2241 18 6 6.3199 -0.7669 4.0369 19 6 7.7073 -0.5549 4.6460 20 1 8.2507 -1.4998 4.6439 21 8 8.4234 0.4040 3.8685 22 6 9.6628 0.8004 4.4666 23 6 9.3557 1.6553 5.6974 24 6 8.3325 0.9599 6.5586 25 6 8.1731 1.3746 7.8714 26 6 7.2422 0.7624 8.6868 27 6 6.4653 -0.2685 8.1914 28 6 6.6246 -0.6832 6.8843 29 6 7.5605 -0.0707 6.0651 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 -0.0007 32 1 4.7237 -3.9609 -1.4315 33 1 3.2735 -3.0421 -1.9013 34 1 5.2095 -2.3258 -3.1034 35 1 6.0785 -1.5913 -0.0305 36 1 6.0111 -3.2176 0.6897 37 1 4.4813 -1.4693 2.2957 38 1 5.8107 0.1930 3.9509 39 1 5.7389 -1.4303 4.6774 40 1 10.2246 -0.0843 4.7661 41 1 10.2463 1.3796 3.7509 42 1 10.2701 1.8062 6.2712 43 1 8.9640 2.6213 5.3791 44 1 8.7797 2.1801 8.2583 45 1 7.1204 1.0885 9.7091 46 1 5.7348 -0.7483 8.8259 47 1 6.0176 -1.4888 6.4983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717782884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:52 Heat of formation + Delta-G solvation = -119.580605 kcal Electronic energy + Delta-G solvation = -28905.126946 eV Core-core repulsion = 24858.913719 eV Total energy + Delta-G solvation = -4046.213227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.59 seconds Orbital eigenvalues (eV) -41.57632 -40.46678 -38.75905 -38.35586 -36.44228 -35.18817 -34.75921 -33.43409 -33.14678 -31.18723 -30.52557 -29.41686 -26.73040 -25.39400 -24.97394 -24.64180 -22.82217 -21.69063 -21.11380 -21.00314 -19.83809 -18.48409 -18.29196 -17.86399 -17.46134 -17.10116 -16.75826 -16.52525 -16.32104 -16.05004 -15.65881 -15.35448 -15.02809 -14.99531 -14.84406 -14.62170 -14.44052 -14.27593 -14.22133 -14.07650 -13.45831 -13.39283 -13.19261 -13.04383 -12.81364 -12.63283 -12.62080 -12.39485 -12.33537 -11.90066 -11.85048 -11.78290 -11.55696 -11.10010 -10.86212 -10.74512 -10.56720 -9.99185 -9.71632 -9.55726 -9.32643 -8.01089 -5.32929 0.34513 0.43072 1.37576 1.41730 1.46142 1.69126 2.26371 2.48301 2.72029 2.85709 3.31031 3.45838 3.55121 3.64804 3.70681 3.81262 3.89248 3.94948 4.02612 4.12329 4.22349 4.28978 4.30492 4.38920 4.42844 4.53731 4.58827 4.60435 4.62527 4.66435 4.80540 4.83968 4.87691 4.95679 4.98857 5.07088 5.15935 5.19291 5.50252 5.52745 5.59045 5.61674 5.78812 6.06567 6.19868 6.22811 6.61230 7.02817 7.09220 7.29564 7.84009 8.02977 9.19847 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.003049 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.067552 B = 9180.473389 C =10141.700500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.052 4.052 3 Si 0.942 3.058 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.260 1.260 7 C -0.220 4.220 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.166 3.834 11 H 0.083 0.917 12 C 0.064 3.936 13 O -0.584 6.584 14 C 0.128 3.872 15 N -0.720 5.720 16 C 0.511 3.489 17 O -0.573 6.573 18 C -0.130 4.130 19 C 0.153 3.847 20 H 0.067 0.933 21 O -0.388 6.388 22 C 0.053 3.947 23 C -0.111 4.111 24 C -0.089 4.089 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.128 4.128 28 C -0.120 4.120 29 C -0.132 4.132 30 H 0.256 0.744 31 H 0.362 0.638 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.388 0.612 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.410 0.590 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.056 0.944 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.927 -1.933 16.162 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.244 4.244 3 Si 0.772 3.228 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.185 1.185 7 C -0.351 4.351 8 H 0.087 0.913 9 N -0.384 5.384 10 C 0.058 3.942 11 H 0.101 0.899 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.004 3.996 15 N -0.372 5.372 16 C 0.298 3.702 17 O -0.452 6.452 18 C -0.169 4.169 19 C 0.095 3.905 20 H 0.085 0.915 21 O -0.307 6.307 22 C -0.024 4.024 23 C -0.148 4.148 24 C -0.089 4.089 25 C -0.143 4.143 26 C -0.139 4.139 27 C -0.146 4.146 28 C -0.137 4.137 29 C -0.132 4.132 30 H 0.065 0.935 31 H 0.195 0.805 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.236 0.764 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.247 0.753 38 H 0.120 0.880 39 H 0.156 0.844 40 H 0.074 0.926 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.102 0.898 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 19.437 -1.819 16.237 25.391 hybrid contribution -0.420 0.874 -0.646 1.165 sum 19.017 -0.945 15.590 24.609 Atomic orbital electron populations 1.69837 1.06750 1.26357 1.59989 1.25239 0.95743 1.00263 1.03130 0.85614 0.78534 0.81209 0.77489 1.21804 1.22369 1.18476 1.19027 0.82110 0.93531 1.40416 0.91252 1.42720 1.02426 1.03418 1.89796 1.20826 0.90800 0.88815 0.93800 0.89922 1.22818 0.93467 0.92007 0.93328 1.86474 1.72179 1.52668 1.27799 1.21381 0.96911 0.98552 0.82778 1.46050 1.09679 1.63560 1.17864 1.20884 0.83844 0.77664 0.87775 1.90663 1.26899 1.54512 1.73165 1.21862 0.97788 1.03762 0.93517 1.20438 0.91964 0.91682 0.86454 0.91497 1.88137 1.34672 1.60913 1.46969 1.22777 0.85708 0.98378 0.95500 1.21152 0.98666 0.99111 0.95867 1.19791 0.97771 0.95999 0.95369 1.21344 0.99535 1.00697 0.92765 1.21498 0.95466 0.96059 1.00840 1.21440 1.00039 0.97665 0.95436 1.21327 0.97643 1.00366 0.94409 1.20240 0.98689 0.98310 0.95996 0.93469 0.80484 0.91295 0.94629 0.76409 0.92887 0.90156 0.75339 0.87977 0.84399 0.92572 0.87364 0.87403 0.89795 0.84007 0.83620 0.83745 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.74 13.97 21.65 0.30 -60.44 16 2 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 3 Si 0.94 46.06 27.73 68.60 1.90 47.96 16 4 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.26 -11.82 6.52 99.48 0.65 -11.17 16 7 C -0.22 -11.69 10.41 84.03 0.87 -10.82 16 8 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 9 N -0.74 -32.68 4.31 -322.96 -1.39 -34.07 16 10 C 0.17 5.80 2.84 44.99 0.13 5.93 16 11 H 0.08 2.76 8.08 -2.39 -0.02 2.74 16 12 C 0.06 2.02 6.86 71.98 0.49 2.51 16 13 O -0.58 -18.76 12.64 -148.98 -1.88 -20.64 16 14 C 0.13 4.20 5.12 86.38 0.44 4.65 16 15 N -0.72 -22.66 5.39 -463.06 -2.49 -25.16 16 16 C 0.51 16.30 7.71 87.65 0.68 16.97 16 17 O -0.57 -22.08 15.40 10.99 0.17 -21.91 16 18 C -0.13 -3.23 5.11 29.85 0.15 -3.08 16 19 C 0.15 3.91 2.28 29.84 0.07 3.98 16 20 H 0.07 1.80 7.94 -2.39 -0.02 1.78 16 21 O -0.39 -11.40 9.65 -134.96 -1.30 -12.70 16 22 C 0.05 1.11 6.85 71.97 0.49 1.60 16 23 C -0.11 -1.91 6.00 29.85 0.18 -1.73 16 24 C -0.09 -1.79 5.78 -19.85 -0.11 -1.91 16 25 C -0.13 -2.04 9.67 22.31 0.22 -1.83 16 26 C -0.12 -1.79 10.05 22.24 0.22 -1.57 16 27 C -0.13 -2.02 10.05 22.23 0.22 -1.80 16 28 C -0.12 -2.22 9.08 22.32 0.20 -2.01 16 29 C -0.13 -2.91 5.46 -19.86 -0.11 -3.01 16 30 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.36 16.64 5.66 -92.70 -0.52 16.12 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.39 8.56 9.12 -74.05 -0.68 7.88 16 35 H 0.05 2.00 7.39 -2.39 -0.02 1.98 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.41 12.58 8.14 -92.70 -0.75 11.83 16 38 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.14 2.50 6.30 -2.39 -0.02 2.48 16 40 H 0.06 1.12 8.07 -2.39 -0.02 1.10 16 41 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 42 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 45 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 47 H 0.14 2.07 6.45 -2.91 -0.02 2.05 16 Total: -1.00 -75.86 383.27 -1.08 -76.94 By element: Atomic # 1 Polarization: 45.61 SS G_CDS: -1.00 Total: 44.61 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 4.62 Total: 5.41 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -3.59 Total: -119.67 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -3.02 Total: -55.26 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.90 Total: 47.96 kcal Total: -75.86 -1.08 -76.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717782884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.636 kcal (2) G-P(sol) polarization free energy of solvation -75.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.59 seconds