Wall clock time and date at job start Tue Mar 31 2020 21:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86809 * 120.00042 * 2 1 4 4 H 1.48499 * 109.47258 * 240.00238 * 3 2 1 5 5 H 1.48509 * 109.46793 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47234 * 119.99845 * 3 2 1 7 7 C 1.38809 * 120.00464 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00475 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99353 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99646 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47216 * 34.99642 * 10 9 7 12 12 C 1.53002 * 109.47221 * 275.00068 * 10 9 7 13 13 O 1.42903 * 109.46995 * 295.00102 * 12 10 9 14 14 C 1.53000 * 109.47267 * 155.00300 * 10 9 7 15 15 N 1.46504 * 109.46694 * 304.99590 * 14 10 9 16 16 C 1.34774 * 119.99830 * 179.97438 * 15 14 10 17 17 O 1.21281 * 120.00501 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99852 * 180.02562 * 16 15 14 19 19 C 1.53004 * 109.47163 * 180.02562 * 18 16 15 20 20 H 1.09002 * 109.34123 * 54.99651 * 19 18 16 21 21 O 1.42725 * 109.33474 * 295.31749 * 19 18 16 22 22 C 1.43220 * 113.11716 * 188.14688 * 21 19 18 23 23 C 1.52970 * 108.47780 * 70.71249 * 22 21 19 24 24 C 1.50734 * 109.76942 * 310.84331 * 23 22 21 25 25 C 1.38603 * 118.76775 * 196.80791 * 24 23 22 26 26 C 1.38066 * 120.27842 * 180.20064 * 25 24 23 27 27 C 1.38250 * 119.86645 * 0.02562 * 26 25 24 28 28 C 1.38058 * 119.89754 * 359.90292 * 27 26 25 29 29 C 1.37904 * 121.35654 * 16.85367 * 24 23 22 30 30 H 0.97003 * 119.99807 * 359.97438 * 1 2 3 31 31 H 0.96992 * 120.00200 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47303 * 54.99821 * 12 10 9 33 33 H 1.09006 * 109.47366 * 175.00319 * 12 10 9 34 34 H 0.96707 * 114.00085 * 180.02562 * 13 12 10 35 35 H 1.09004 * 109.47538 * 185.00493 * 14 10 9 36 36 H 1.08997 * 109.47161 * 64.99394 * 14 10 9 37 37 H 0.97003 * 119.99886 * 0.02562 * 15 14 10 38 38 H 1.08993 * 109.47375 * 60.00080 * 18 16 15 39 39 H 1.09006 * 109.46893 * 300.00038 * 18 16 15 40 40 H 1.09001 * 109.63875 * 190.41408 * 22 21 19 41 41 H 1.09000 * 109.63542 * 311.02047 * 22 21 19 42 42 H 1.09006 * 109.41765 * 70.92954 * 23 22 21 43 43 H 1.09001 * 109.42127 * 190.74343 * 23 22 21 44 44 H 1.08006 * 119.85499 * 0.19418 * 25 24 23 45 45 H 1.08006 * 120.06428 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.05660 * 179.88326 * 27 26 25 47 47 H 1.07997 * 119.85363 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9689 -3.5504 0.5899 12 6 2.4220 -4.0355 -1.4365 13 8 1.2278 -4.2885 -2.1794 14 6 1.1810 -4.7521 0.6101 15 7 0.7344 -4.3354 1.9417 16 6 -0.0554 -5.1472 2.6722 17 8 -0.3961 -6.2229 2.2274 18 6 -0.5152 -4.7184 4.0418 19 6 -1.3923 -5.8138 4.6515 20 1 -0.8452 -6.7566 4.6508 21 8 -2.5801 -5.9560 3.8731 22 6 -3.5446 -6.8284 4.4732 23 6 -4.1320 -6.1303 5.7011 24 6 -3.0186 -5.5899 6.5616 25 6 -3.2991 -5.2398 7.8731 26 6 -2.3038 -4.7379 8.6877 27 6 -1.0220 -4.5833 8.1931 28 6 -0.7413 -4.9331 6.8874 29 6 -1.7394 -5.4394 6.0690 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 -0.0002 32 1 2.9716 -3.2163 -1.9001 33 1 3.0426 -4.9316 -1.4300 34 1 1.3830 -4.5352 -3.1015 35 1 1.7559 -5.6745 0.6919 36 1 0.3134 -4.9199 -0.0280 37 1 1.0066 -3.4750 2.2974 38 1 -1.0899 -3.7959 3.9598 39 1 0.3522 -4.5505 4.6803 40 1 -4.3393 -7.0428 3.7586 41 1 -3.0603 -7.7566 4.7764 42 1 -4.7725 -5.3090 5.3792 43 1 -4.7212 -6.8442 6.2766 44 1 -4.3006 -5.3601 8.2592 45 1 -2.5263 -4.4658 9.7089 46 1 -0.2416 -4.1892 8.8271 47 1 0.2601 -4.8116 6.5018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717782885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:32 Heat of formation + Delta-G solvation = -96.692240 kcal Electronic energy + Delta-G solvation = -28778.986899 eV Core-core repulsion = 24733.766186 eV Total energy + Delta-G solvation = -4045.220713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.61788 -39.09862 -37.55613 -37.00417 -34.82916 -33.80624 -33.37996 -32.33261 -31.33981 -30.11243 -28.83262 -28.00596 -25.39718 -24.13791 -23.83047 -23.48915 -21.90904 -20.16888 -20.05607 -19.65805 -17.64392 -17.41352 -16.68920 -16.55126 -16.39216 -15.80283 -15.66497 -15.38392 -14.88989 -14.56196 -14.42956 -14.15809 -13.82538 -13.75936 -13.44357 -13.32901 -13.19683 -13.02513 -12.83230 -12.45124 -12.33757 -12.24627 -11.95929 -11.77206 -11.44464 -11.31436 -11.04052 -10.85493 -10.82320 -10.68762 -10.52909 -10.11053 -9.76702 -9.63836 -9.43365 -9.30535 -8.96386 -8.92627 -8.75384 -8.45344 -7.01569 -5.79223 -3.09745 1.13498 1.18368 3.10902 3.40011 3.44987 3.46622 3.49309 3.69844 3.78709 4.46996 4.50897 4.54361 4.64538 4.75450 4.92313 4.96091 4.98184 5.10501 5.18051 5.25388 5.26763 5.37453 5.43478 5.49071 5.54151 5.56674 5.62572 5.68472 5.75411 5.81324 5.90032 5.93894 5.95179 6.06548 6.10119 6.25823 6.32143 6.39958 6.43447 6.55083 6.79742 6.80517 7.03335 7.18754 7.63188 8.07526 8.23937 8.37629 8.73918 9.49715 10.05750 10.42379 11.42127 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.002888 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.413518 B = 9693.563384 C =11065.715907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.064 0.936 12 C 0.059 3.941 13 O -0.560 6.560 14 C 0.120 3.880 15 N -0.715 5.715 16 C 0.513 3.487 17 O -0.543 6.543 18 C -0.135 4.135 19 C 0.150 3.850 20 H 0.078 0.922 21 O -0.352 6.352 22 C 0.060 3.940 23 C -0.117 4.117 24 C -0.070 4.070 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.122 4.122 28 C -0.110 4.110 29 C -0.112 4.112 30 H 0.256 0.744 31 H 0.389 0.611 32 H 0.048 0.952 33 H 0.026 0.974 34 H 0.363 0.637 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.408 0.592 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 -13.253 14.517 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.380 4.380 8 H 0.087 0.913 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.082 0.918 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.004 4.004 15 N -0.367 5.367 16 C 0.298 3.702 17 O -0.421 6.421 18 C -0.175 4.175 19 C 0.092 3.908 20 H 0.096 0.904 21 O -0.270 6.270 22 C -0.017 4.017 23 C -0.154 4.154 24 C -0.071 4.071 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.140 4.140 28 C -0.127 4.127 29 C -0.112 4.112 30 H 0.066 0.934 31 H 0.224 0.776 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.208 0.792 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.244 0.756 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.316 -13.608 14.600 20.232 hybrid contribution 0.666 1.330 -0.158 1.496 sum -2.650 -12.278 14.442 19.140 Atomic orbital electron populations 1.69672 1.05067 1.25817 1.56639 1.24744 0.95433 0.97604 1.02624 0.86310 0.78532 0.83731 0.77770 1.21376 1.21718 1.21258 1.19166 0.90847 0.84101 1.43898 0.91299 1.42370 1.06086 0.99014 1.87988 1.20589 0.95023 0.87108 0.91837 0.91771 1.23041 0.86502 0.97181 0.95503 1.86583 1.32138 1.91878 1.25670 1.21498 0.99376 0.96614 0.82933 1.45980 1.50944 1.21818 1.18003 1.20295 0.78272 0.84708 0.86876 1.90673 1.56166 1.22837 1.72413 1.21800 1.00261 1.00350 0.95066 1.20509 0.86807 0.98011 0.85484 0.90406 1.88224 1.26750 1.66937 1.45125 1.22571 0.92245 0.92362 0.94519 1.21182 0.96505 1.01206 0.96551 1.19527 0.93964 0.99174 0.94386 1.21061 0.99364 1.00030 0.93355 1.21107 0.93341 0.99559 0.99715 1.21103 0.96939 1.00365 0.95621 1.21117 0.99058 0.98691 0.93883 1.20292 0.93783 1.00394 0.96747 0.93380 0.77617 0.93397 0.95591 0.79219 0.92362 0.90717 0.75585 0.87626 0.87610 0.88311 0.92811 0.89550 0.89904 0.86080 0.86077 0.85876 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.38 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.56 9.93 -15.06 -0.15 -6.71 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.71 -17.12 4.51 -53.42 -0.24 -17.36 16 10 C 0.17 3.18 2.84 -67.93 -0.19 2.99 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 C 0.06 1.04 6.86 37.16 0.25 1.30 16 13 O -0.56 -10.23 12.64 -35.23 -0.45 -10.68 16 14 C 0.12 2.20 5.12 -4.04 -0.02 2.18 16 15 N -0.72 -12.43 5.39 -60.29 -0.32 -12.76 16 16 C 0.51 8.84 7.70 -10.99 -0.08 8.76 16 17 O -0.54 -11.03 15.40 -9.31 -0.14 -11.17 16 18 C -0.13 -1.85 5.10 -27.88 -0.14 -1.99 16 19 C 0.15 2.05 2.29 -27.90 -0.06 1.98 16 20 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 21 O -0.35 -5.42 9.64 -50.10 -0.48 -5.91 16 22 C 0.06 0.68 6.85 37.14 0.25 0.94 16 23 C -0.12 -1.15 6.00 -27.88 -0.17 -1.32 16 24 C -0.07 -0.79 5.78 -104.59 -0.60 -1.40 16 25 C -0.12 -1.17 9.67 -39.51 -0.38 -1.55 16 26 C -0.12 -1.09 10.05 -39.64 -0.40 -1.49 16 27 C -0.12 -1.16 10.05 -39.64 -0.40 -1.56 16 28 C -0.11 -1.16 9.08 -39.50 -0.36 -1.52 16 29 C -0.11 -1.35 5.46 -104.61 -0.57 -1.92 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.39 10.45 7.80 -40.82 -0.32 10.13 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.36 4.80 9.12 45.56 0.42 5.22 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.56 7.39 -51.93 -0.38 1.18 16 37 H 0.41 7.03 8.14 -40.82 -0.33 6.70 16 38 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.11 1.12 6.30 -51.93 -0.33 0.80 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.57 8.07 -51.93 -0.42 0.15 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 45 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.13 1.13 6.45 -52.49 -0.34 0.79 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -34.09 386.37 -9.54 -43.63 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -6.31 Total: 19.99 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.12 Total: -1.60 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.16 Total: -56.77 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -1.07 Total: -27.75 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.09 -9.54 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717782885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.058 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds