Wall clock time and date at job start Tue Mar 31 2020 21:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86809 * 120.00042 * 2 1 4 4 H 1.48499 * 109.47258 * 240.00238 * 3 2 1 5 5 H 1.48509 * 109.46793 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47234 * 119.99845 * 3 2 1 7 7 C 1.38809 * 120.00464 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00475 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99353 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99646 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47216 * 34.99642 * 10 9 7 12 12 C 1.53002 * 109.47221 * 275.00068 * 10 9 7 13 13 O 1.42903 * 109.46995 * 295.00102 * 12 10 9 14 14 C 1.53000 * 109.47267 * 155.00300 * 10 9 7 15 15 N 1.46504 * 109.46694 * 304.99590 * 14 10 9 16 16 C 1.34774 * 119.99830 * 179.97438 * 15 14 10 17 17 O 1.21281 * 120.00501 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99852 * 180.02562 * 16 15 14 19 19 C 1.53004 * 109.47163 * 180.02562 * 18 16 15 20 20 H 1.09002 * 109.34123 * 54.99651 * 19 18 16 21 21 O 1.42725 * 109.33474 * 295.31749 * 19 18 16 22 22 C 1.43220 * 113.11716 * 188.14688 * 21 19 18 23 23 C 1.52970 * 108.47780 * 70.71249 * 22 21 19 24 24 C 1.50734 * 109.76942 * 310.84331 * 23 22 21 25 25 C 1.38603 * 118.76775 * 196.80791 * 24 23 22 26 26 C 1.38066 * 120.27842 * 180.20064 * 25 24 23 27 27 C 1.38250 * 119.86645 * 0.02562 * 26 25 24 28 28 C 1.38058 * 119.89754 * 359.90292 * 27 26 25 29 29 C 1.37904 * 121.35654 * 16.85367 * 24 23 22 30 30 H 0.97003 * 119.99807 * 359.97438 * 1 2 3 31 31 H 0.96992 * 120.00200 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47303 * 54.99821 * 12 10 9 33 33 H 1.09006 * 109.47366 * 175.00319 * 12 10 9 34 34 H 0.96707 * 114.00085 * 180.02562 * 13 12 10 35 35 H 1.09004 * 109.47538 * 185.00493 * 14 10 9 36 36 H 1.08997 * 109.47161 * 64.99394 * 14 10 9 37 37 H 0.97003 * 119.99886 * 0.02562 * 15 14 10 38 38 H 1.08993 * 109.47375 * 60.00080 * 18 16 15 39 39 H 1.09006 * 109.46893 * 300.00038 * 18 16 15 40 40 H 1.09001 * 109.63875 * 190.41408 * 22 21 19 41 41 H 1.09000 * 109.63542 * 311.02047 * 22 21 19 42 42 H 1.09006 * 109.41765 * 70.92954 * 23 22 21 43 43 H 1.09001 * 109.42127 * 190.74343 * 23 22 21 44 44 H 1.08006 * 119.85499 * 0.19418 * 25 24 23 45 45 H 1.08006 * 120.06428 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.05660 * 179.88326 * 27 26 25 47 47 H 1.07997 * 119.85363 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9689 -3.5504 0.5899 12 6 2.4220 -4.0355 -1.4365 13 8 1.2278 -4.2885 -2.1794 14 6 1.1810 -4.7521 0.6101 15 7 0.7344 -4.3354 1.9417 16 6 -0.0554 -5.1472 2.6722 17 8 -0.3961 -6.2229 2.2274 18 6 -0.5152 -4.7184 4.0418 19 6 -1.3923 -5.8138 4.6515 20 1 -0.8452 -6.7566 4.6508 21 8 -2.5801 -5.9560 3.8731 22 6 -3.5446 -6.8284 4.4732 23 6 -4.1320 -6.1303 5.7011 24 6 -3.0186 -5.5899 6.5616 25 6 -3.2991 -5.2398 7.8731 26 6 -2.3038 -4.7379 8.6877 27 6 -1.0220 -4.5833 8.1931 28 6 -0.7413 -4.9331 6.8874 29 6 -1.7394 -5.4394 6.0690 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 -0.0002 32 1 2.9716 -3.2163 -1.9001 33 1 3.0426 -4.9316 -1.4300 34 1 1.3830 -4.5352 -3.1015 35 1 1.7559 -5.6745 0.6919 36 1 0.3134 -4.9199 -0.0280 37 1 1.0066 -3.4750 2.2974 38 1 -1.0899 -3.7959 3.9598 39 1 0.3522 -4.5505 4.6803 40 1 -4.3393 -7.0428 3.7586 41 1 -3.0603 -7.7566 4.7764 42 1 -4.7725 -5.3090 5.3792 43 1 -4.7212 -6.8442 6.2766 44 1 -4.3006 -5.3601 8.2592 45 1 -2.5263 -4.4658 9.7089 46 1 -0.2416 -4.1892 8.8271 47 1 0.2601 -4.8116 6.5018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717782885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:09 Heat of formation + Delta-G solvation = -121.668769 kcal Electronic energy + Delta-G solvation = -28780.069962 eV Core-core repulsion = 24733.766186 eV Total energy + Delta-G solvation = -4046.303777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 24.29 seconds Orbital eigenvalues (eV) -41.55219 -40.41668 -38.66998 -38.32050 -36.36601 -35.12512 -34.74001 -33.29282 -33.01199 -31.04634 -30.18053 -29.31689 -26.69408 -25.65098 -25.00343 -24.63336 -22.80530 -21.60493 -21.03392 -20.98173 -19.40565 -18.46341 -18.15429 -17.84118 -17.45167 -17.06631 -16.76378 -16.39553 -16.31555 -15.98619 -15.52360 -15.34106 -15.24467 -14.92365 -14.78149 -14.60574 -14.36937 -14.20019 -14.10561 -13.71346 -13.43607 -13.27466 -13.10222 -12.93411 -12.72420 -12.63817 -12.58406 -12.38182 -12.26692 -11.90548 -11.83562 -11.71279 -11.54068 -11.01828 -10.81359 -10.71167 -10.54430 -9.93477 -9.70031 -9.54160 -8.99127 -7.88009 -5.17661 0.36119 0.44542 1.51060 1.52996 1.59094 1.73017 2.32074 2.59393 2.74183 2.87791 3.43735 3.56536 3.62865 3.66879 3.83259 3.91364 3.92496 4.00821 4.07846 4.14220 4.23805 4.30445 4.32825 4.41738 4.47659 4.57742 4.60170 4.61452 4.63900 4.68331 4.82430 4.89389 4.90808 4.97702 5.01582 5.08519 5.17443 5.25932 5.51707 5.54366 5.59769 5.60116 5.63539 6.08135 6.22661 6.30084 6.66633 7.07281 7.34117 7.38230 8.10922 8.36532 9.34543 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.002888 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.413518 B = 9693.563384 C =11065.715907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.282 1.282 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.238 4.238 8 H 0.082 0.918 9 N -0.723 5.723 10 C 0.162 3.838 11 H 0.081 0.919 12 C 0.063 3.937 13 O -0.585 6.585 14 C 0.131 3.869 15 N -0.714 5.714 16 C 0.510 3.490 17 O -0.576 6.576 18 C -0.127 4.127 19 C 0.153 3.847 20 H 0.068 0.932 21 O -0.389 6.389 22 C 0.052 3.948 23 C -0.111 4.111 24 C -0.089 4.089 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.128 4.128 28 C -0.120 4.120 29 C -0.132 4.132 30 H 0.248 0.752 31 H 0.372 0.628 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.385 0.615 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.410 0.590 38 H 0.099 0.901 39 H 0.138 0.862 40 H 0.107 0.893 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 -13.480 16.276 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.209 1.209 5 H -0.230 1.230 6 H -0.199 1.199 7 C -0.369 4.369 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.052 3.948 11 H 0.099 0.901 12 C -0.017 4.017 13 O -0.391 6.391 14 C 0.007 3.993 15 N -0.366 5.366 16 C 0.298 3.702 17 O -0.456 6.456 18 C -0.166 4.166 19 C 0.095 3.905 20 H 0.085 0.915 21 O -0.308 6.308 22 C -0.024 4.024 23 C -0.148 4.148 24 C -0.089 4.089 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.145 4.145 28 C -0.137 4.137 29 C -0.132 4.132 30 H 0.057 0.943 31 H 0.203 0.797 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.246 0.754 38 H 0.117 0.883 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.160 0.840 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.006 -13.874 16.351 21.538 hybrid contribution 0.293 1.276 -0.714 1.491 sum -1.713 -12.598 15.638 20.154 Atomic orbital electron populations 1.69850 1.06711 1.25813 1.59349 1.25497 0.96110 1.00872 1.03889 0.85278 0.77086 0.79565 0.78145 1.20894 1.22985 1.19948 1.19587 0.91486 0.84827 1.41047 0.90015 1.42483 1.05341 1.00241 1.88183 1.20851 0.95127 0.85322 0.93464 0.90107 1.22901 0.86506 0.98565 0.93765 1.86538 1.32953 1.92055 1.27575 1.21321 0.98152 0.97037 0.82830 1.45993 1.51018 1.21847 1.17696 1.20896 0.77403 0.84061 0.87885 1.90650 1.57262 1.24328 1.73397 1.21833 1.01409 0.99995 0.93395 1.20444 0.86231 0.97339 0.86501 0.91479 1.88159 1.27883 1.67913 1.46810 1.22788 0.91898 0.92217 0.95515 1.21157 0.96279 1.01495 0.95895 1.19792 0.94008 0.99721 0.95405 1.21349 1.00683 0.99568 0.92735 1.21495 0.93039 0.98451 1.00849 1.21435 0.97878 0.99844 0.95391 1.21326 0.99321 0.98656 0.94444 1.20246 0.94897 1.02160 0.95946 0.94334 0.79679 0.94511 0.91638 0.76734 0.90565 0.93746 0.75411 0.88300 0.84446 0.87448 0.92486 0.89868 0.87313 0.83958 0.83526 0.83656 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.48 13.06 21.65 0.28 -58.19 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.24 -12.37 9.93 84.03 0.83 -11.54 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 9 N -0.72 -34.68 4.51 -322.94 -1.46 -36.14 16 10 C 0.16 6.02 2.84 44.99 0.13 6.15 16 11 H 0.08 2.76 8.08 -2.39 -0.02 2.74 16 12 C 0.06 2.11 6.86 71.98 0.49 2.61 16 13 O -0.58 -20.91 12.64 -148.98 -1.88 -22.79 16 14 C 0.13 4.76 5.12 86.38 0.44 5.20 16 15 N -0.71 -24.88 5.39 -463.05 -2.49 -27.37 16 16 C 0.51 17.85 7.70 87.66 0.68 18.53 16 17 O -0.58 -23.98 15.40 11.19 0.17 -23.81 16 18 C -0.13 -3.49 5.10 29.85 0.15 -3.34 16 19 C 0.15 4.25 2.29 29.84 0.07 4.31 16 20 H 0.07 1.93 7.95 -2.39 -0.02 1.91 16 21 O -0.39 -12.40 9.64 -134.76 -1.30 -13.70 16 22 C 0.05 1.20 6.85 71.97 0.49 1.69 16 23 C -0.11 -2.10 6.00 29.85 0.18 -1.92 16 24 C -0.09 -1.92 5.78 -19.85 -0.11 -2.04 16 25 C -0.13 -2.19 9.67 22.32 0.22 -1.97 16 26 C -0.12 -1.90 10.05 22.23 0.22 -1.68 16 27 C -0.13 -2.13 10.05 22.23 0.22 -1.91 16 28 C -0.12 -2.37 9.08 22.32 0.20 -2.17 16 29 C -0.13 -3.13 5.46 -19.86 -0.11 -3.24 16 30 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.37 20.40 7.80 -92.71 -0.72 19.68 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.38 9.70 9.12 -74.05 -0.68 9.02 16 35 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.04 1.89 7.39 -2.39 -0.02 1.88 16 37 H 0.41 14.08 8.14 -92.71 -0.75 13.33 16 38 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.14 2.79 6.30 -2.38 -0.02 2.77 16 40 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.06 1.23 8.07 -2.39 -0.02 1.21 16 42 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 46 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 47 H 0.14 2.24 6.45 -2.91 -0.02 2.22 16 Total: -1.00 -74.69 386.37 -1.22 -75.91 By element: Atomic # 1 Polarization: 55.30 SS G_CDS: -1.14 Total: 54.16 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 4.57 Total: 5.23 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -3.67 Total: -121.70 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: -3.01 Total: -60.29 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -74.69 -1.22 -75.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717782885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.761 kcal (2) G-P(sol) polarization free energy of solvation -74.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.29 seconds