Wall clock time and date at job start Tue Mar 31 2020 21:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00422 * 2 1 4 4 H 1.48496 * 109.47481 * 270.00431 * 3 2 1 5 5 H 1.48505 * 109.46785 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.47051 * 149.99906 * 3 2 1 7 7 C 1.38816 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99903 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99735 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99572 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47099 * 35.00601 * 10 9 7 12 12 C 1.52993 * 109.47387 * 274.99954 * 10 9 7 13 13 O 1.42895 * 109.47632 * 295.00076 * 12 10 9 14 14 C 1.53005 * 109.46668 * 155.00010 * 10 9 7 15 15 N 1.46494 * 109.47478 * 305.00131 * 14 10 9 16 16 C 1.34773 * 120.00323 * 180.02562 * 15 14 10 17 17 O 1.21285 * 119.99988 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00120 * 180.02562 * 16 15 14 19 19 O 1.42902 * 109.47038 * 179.97438 * 18 16 15 20 20 C 1.35895 * 116.99970 * 179.97438 * 19 18 16 21 21 C 1.38748 * 120.09186 * 0.02562 * 20 19 18 22 22 C 1.38006 * 119.87745 * 180.02562 * 21 20 19 23 23 C 1.38542 * 120.29202 * 359.97438 * 22 21 20 24 24 C 1.38266 * 119.93797 * 0.02562 * 23 22 21 25 25 C 1.38416 * 119.90274 * 0.02562 * 24 23 22 26 26 C 1.51383 * 109.75351 * 180.02562 * 24 23 22 27 27 C 1.54339 * 105.17324 * 342.80716 * 26 24 23 28 28 C 1.51698 * 130.24225 * 179.84274 * 23 22 21 29 29 H 0.97005 * 119.99689 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00523 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47298 * 55.00821 * 12 10 9 32 32 H 1.09008 * 109.46914 * 175.00161 * 12 10 9 33 33 H 0.96701 * 114.00247 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.46801 * 185.00143 * 14 10 9 35 35 H 1.08997 * 109.47298 * 65.00368 * 14 10 9 36 36 H 0.97001 * 119.99808 * 0.02562 * 15 14 10 37 37 H 1.09006 * 109.47032 * 60.00060 * 18 16 15 38 38 H 1.08997 * 109.46963 * 300.00031 * 18 16 15 39 39 H 1.08007 * 120.06382 * 0.02562 * 21 20 19 40 40 H 1.08006 * 119.85283 * 180.02562 * 22 21 20 41 41 H 1.07995 * 119.91041 * 180.02562 * 25 24 23 42 42 H 1.09000 * 110.30267 * 223.87989 * 26 24 23 43 43 H 1.08997 * 110.38024 * 101.77648 * 26 24 23 44 44 H 1.09002 * 110.82153 * 144.59302 * 27 26 24 45 45 H 1.09002 * 110.82354 * 267.94058 * 27 26 24 46 46 H 1.09003 * 110.25235 * 78.27189 * 28 23 22 47 47 H 1.08997 * 110.49495 * 316.02724 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1119 -2.4710 -0.0011 11 1 3.5644 -3.2066 -0.5902 12 6 4.2586 -2.9753 1.4359 13 8 5.0751 -2.0675 2.1783 14 6 5.4989 -2.2591 -0.6113 15 7 5.3610 -1.6643 -1.9429 16 6 6.4586 -1.3873 -2.6743 17 8 7.5606 -1.6309 -2.2302 18 6 6.3166 -0.7748 -4.0439 19 8 7.6120 -0.5770 -4.6139 20 6 7.6622 -0.0294 -5.8566 21 6 6.4892 0.3114 -6.5145 22 6 6.5453 0.8667 -7.7767 23 6 7.7681 1.0861 -8.3899 24 6 8.9385 0.7473 -7.7363 25 6 8.8853 0.1892 -6.4708 26 6 10.1282 1.0839 -8.6098 27 6 9.5504 1.2555 -10.0306 28 6 8.0905 1.6709 -9.7520 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3623 -0.0007 31 1 3.2746 -3.0417 1.8999 32 1 4.7244 -3.9608 1.4293 33 1 5.2115 -2.3252 3.1004 34 1 6.0102 -3.2183 -0.6931 35 1 6.0784 -1.5917 0.0265 36 1 4.4796 -1.4698 -2.2982 37 1 5.8059 0.1847 -3.9617 38 1 5.7365 -1.4417 -4.6818 39 1 5.5339 0.1424 -6.0398 40 1 5.6319 1.1323 -8.2883 41 1 9.7994 -0.0751 -5.9599 42 1 10.8528 0.2699 -8.5919 43 1 10.5937 2.0113 -8.2761 44 1 10.0799 2.0395 -10.5721 45 1 9.5872 0.3149 -10.5801 46 1 8.0050 2.7573 -9.7260 47 1 7.4277 1.2567 -10.5117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717783790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:04 Heat of formation + Delta-G solvation = -85.614293 kcal Electronic energy + Delta-G solvation = -27866.236669 eV Core-core repulsion = 23821.496332 eV Total energy + Delta-G solvation = -4044.740337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.73443 -39.66565 -38.45463 -37.24049 -35.13049 -34.93168 -33.65046 -31.80541 -31.56842 -29.64729 -28.75540 -28.40353 -26.99953 -24.97345 -23.34600 -23.05148 -21.21763 -21.08584 -20.34333 -20.00748 -18.09243 -18.01106 -17.03993 -16.92924 -16.45733 -16.05328 -15.91184 -15.72423 -15.30266 -14.90781 -14.64222 -14.36379 -14.17328 -13.62996 -13.60826 -13.35839 -13.21136 -13.16074 -12.92010 -12.71826 -12.51269 -12.41835 -12.20242 -11.78953 -11.67811 -11.51240 -11.48689 -11.06531 -10.93542 -10.88250 -10.76799 -10.73616 -10.16677 -9.74922 -9.69941 -9.50066 -9.06849 -9.00325 -8.83305 -8.19829 -7.41498 -5.88659 -3.25505 1.11192 1.23047 2.53953 2.67976 3.29946 3.39649 3.40900 3.50994 3.67530 4.22211 4.27751 4.50244 4.58538 4.66419 4.73784 4.77458 4.82991 4.91343 4.96603 5.01788 5.09021 5.14521 5.22354 5.29322 5.37443 5.39919 5.41150 5.47968 5.58868 5.63164 5.75523 5.81756 5.85583 5.88121 5.93402 6.07824 6.14449 6.18502 6.32783 6.43319 6.51789 6.54636 6.67060 7.20831 7.67619 7.84517 8.07148 8.30043 8.32811 9.07842 9.80382 10.00256 11.28871 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.002372 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.266554 B =11803.663781 C =13158.205570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.011 3.989 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.251 4.251 8 H 0.091 0.909 9 N -0.739 5.739 10 C 0.171 3.829 11 H 0.076 0.924 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.117 3.883 15 N -0.713 5.713 16 C 0.513 3.487 17 O -0.528 6.528 18 C 0.040 3.960 19 O -0.288 6.288 20 C 0.134 3.866 21 C -0.209 4.209 22 C -0.066 4.066 23 C -0.140 4.140 24 C -0.060 4.060 25 C -0.139 4.139 26 C -0.082 4.082 27 C -0.121 4.121 28 C -0.077 4.077 29 H 0.261 0.739 30 H 0.366 0.634 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.367 0.633 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.410 0.590 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.141 -0.779 -16.586 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.710 3.290 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.381 4.381 8 H 0.109 0.891 9 N -0.382 5.382 10 C 0.061 3.939 11 H 0.094 0.906 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.007 4.007 15 N -0.367 5.367 16 C 0.297 3.703 17 O -0.404 6.404 18 C -0.039 4.039 19 O -0.201 6.201 20 C 0.088 3.912 21 C -0.228 4.228 22 C -0.084 4.084 23 C -0.140 4.140 24 C -0.060 4.060 25 C -0.157 4.157 26 C -0.119 4.119 27 C -0.158 4.158 28 C -0.114 4.114 29 H 0.071 0.929 30 H 0.199 0.801 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.212 0.788 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.247 0.753 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.839 -0.769 -16.722 23.744 hybrid contribution -0.435 1.016 0.624 1.269 sum 16.404 0.247 -16.098 22.985 Atomic orbital electron populations 1.69695 1.05142 1.26020 1.56813 1.24648 0.95158 0.97223 1.01557 0.86620 0.79628 0.84939 0.77844 1.21079 1.21713 1.19909 1.19042 0.80385 0.94703 1.43963 0.89130 1.42753 1.03891 1.01788 1.89761 1.20582 0.90353 0.90648 0.92340 0.90622 1.22988 0.93897 0.90443 0.94884 1.86521 1.72325 1.51991 1.26037 1.21640 0.98553 0.98475 0.81993 1.45858 1.09053 1.63551 1.18225 1.19908 0.85105 0.79246 0.86040 1.90726 1.25646 1.52213 1.71811 1.22525 0.85058 1.02428 0.93872 1.86136 1.28944 1.76887 1.28095 1.18840 0.94071 0.93925 0.84363 1.21212 0.97546 1.06733 0.97261 1.20397 0.96964 0.97067 0.93937 1.20552 0.93133 1.02882 0.97463 1.20300 0.95924 0.96589 0.93230 1.19766 0.96157 1.04837 0.94963 1.21060 0.95388 1.02099 0.93337 1.22289 0.95342 1.01935 0.96244 1.21021 0.96590 1.00414 0.93334 0.92935 0.80076 0.92721 0.95058 0.78812 0.91445 0.90424 0.75346 0.88767 0.88819 0.84973 0.85854 0.85239 0.90490 0.89958 0.90567 0.90941 0.90506 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.97 55.49 0.78 -27.09 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 3 Si 0.88 21.42 27.73 -169.99 -4.71 16.71 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.55 6.52 56.52 0.37 -6.18 16 7 C -0.25 -6.52 10.41 -15.06 -0.16 -6.67 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 N -0.74 -16.03 4.31 -53.42 -0.23 -16.26 16 10 C 0.17 2.99 2.84 -67.93 -0.19 2.80 16 11 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 12 C 0.06 0.95 6.85 37.15 0.25 1.21 16 13 O -0.57 -9.32 12.64 -35.23 -0.45 -9.76 16 14 C 0.12 1.91 5.12 -4.04 -0.02 1.89 16 15 N -0.71 -10.93 5.39 -60.30 -0.32 -11.25 16 16 C 0.51 8.19 7.91 -10.98 -0.09 8.10 16 17 O -0.53 -10.45 16.50 -14.36 -0.24 -10.68 16 18 C 0.04 0.51 5.22 36.01 0.19 0.70 16 19 O -0.29 -4.28 9.67 -39.32 -0.38 -4.66 16 20 C 0.13 1.74 6.68 -39.26 -0.26 1.48 16 21 C -0.21 -2.36 9.04 -39.48 -0.36 -2.72 16 22 C -0.07 -0.67 10.03 -39.55 -0.40 -1.07 16 23 C -0.14 -1.40 6.15 -104.01 -0.64 -2.04 16 24 C -0.06 -0.63 6.13 -104.21 -0.64 -1.27 16 25 C -0.14 -1.68 9.98 -39.38 -0.39 -2.07 16 26 C -0.08 -0.61 6.77 -26.85 -0.18 -0.79 16 27 C -0.12 -0.74 7.07 -25.33 -0.18 -0.92 16 28 C -0.08 -0.55 6.79 -26.70 -0.18 -0.73 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.37 8.27 5.66 -40.82 -0.23 8.04 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.37 4.28 9.12 45.56 0.42 4.70 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.43 7.39 -51.93 -0.38 1.04 16 36 H 0.41 5.96 8.14 -40.82 -0.33 5.63 16 37 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 38 H 0.09 0.94 7.66 -51.93 -0.40 0.55 16 39 H 0.13 1.28 6.31 -52.48 -0.33 0.95 16 40 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -34.41 389.24 -9.35 -43.77 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -6.32 Total: 15.28 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.34 Total: -1.91 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.22 Total: -54.61 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -1.06 Total: -25.10 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.41 -9.35 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717783790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.849 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds