Wall clock time and date at job start Tue Mar 31 2020 21:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00422 * 2 1 4 4 H 1.48496 * 109.47481 * 270.00431 * 3 2 1 5 5 H 1.48505 * 109.46785 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.47051 * 149.99906 * 3 2 1 7 7 C 1.38816 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99903 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99735 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99572 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47099 * 35.00601 * 10 9 7 12 12 C 1.52993 * 109.47387 * 274.99954 * 10 9 7 13 13 O 1.42895 * 109.47632 * 295.00076 * 12 10 9 14 14 C 1.53005 * 109.46668 * 155.00010 * 10 9 7 15 15 N 1.46494 * 109.47478 * 305.00131 * 14 10 9 16 16 C 1.34773 * 120.00323 * 180.02562 * 15 14 10 17 17 O 1.21285 * 119.99988 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00120 * 180.02562 * 16 15 14 19 19 O 1.42902 * 109.47038 * 179.97438 * 18 16 15 20 20 C 1.35895 * 116.99970 * 179.97438 * 19 18 16 21 21 C 1.38748 * 120.09186 * 0.02562 * 20 19 18 22 22 C 1.38006 * 119.87745 * 180.02562 * 21 20 19 23 23 C 1.38542 * 120.29202 * 359.97438 * 22 21 20 24 24 C 1.38266 * 119.93797 * 0.02562 * 23 22 21 25 25 C 1.38416 * 119.90274 * 0.02562 * 24 23 22 26 26 C 1.51383 * 109.75351 * 180.02562 * 24 23 22 27 27 C 1.54339 * 105.17324 * 342.80716 * 26 24 23 28 28 C 1.51698 * 130.24225 * 179.84274 * 23 22 21 29 29 H 0.97005 * 119.99689 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00523 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47298 * 55.00821 * 12 10 9 32 32 H 1.09008 * 109.46914 * 175.00161 * 12 10 9 33 33 H 0.96701 * 114.00247 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.46801 * 185.00143 * 14 10 9 35 35 H 1.08997 * 109.47298 * 65.00368 * 14 10 9 36 36 H 0.97001 * 119.99808 * 0.02562 * 15 14 10 37 37 H 1.09006 * 109.47032 * 60.00060 * 18 16 15 38 38 H 1.08997 * 109.46963 * 300.00031 * 18 16 15 39 39 H 1.08007 * 120.06382 * 0.02562 * 21 20 19 40 40 H 1.08006 * 119.85283 * 180.02562 * 22 21 20 41 41 H 1.07995 * 119.91041 * 180.02562 * 25 24 23 42 42 H 1.09000 * 110.30267 * 223.87989 * 26 24 23 43 43 H 1.08997 * 110.38024 * 101.77648 * 26 24 23 44 44 H 1.09002 * 110.82153 * 144.59302 * 27 26 24 45 45 H 1.09002 * 110.82354 * 267.94058 * 27 26 24 46 46 H 1.09003 * 110.25235 * 78.27189 * 28 23 22 47 47 H 1.08997 * 110.49495 * 316.02724 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1119 -2.4710 -0.0011 11 1 3.5644 -3.2066 -0.5902 12 6 4.2586 -2.9753 1.4359 13 8 5.0751 -2.0675 2.1783 14 6 5.4989 -2.2591 -0.6113 15 7 5.3610 -1.6643 -1.9429 16 6 6.4586 -1.3873 -2.6743 17 8 7.5606 -1.6309 -2.2302 18 6 6.3166 -0.7748 -4.0439 19 8 7.6120 -0.5770 -4.6139 20 6 7.6622 -0.0294 -5.8566 21 6 6.4892 0.3114 -6.5145 22 6 6.5453 0.8667 -7.7767 23 6 7.7681 1.0861 -8.3899 24 6 8.9385 0.7473 -7.7363 25 6 8.8853 0.1892 -6.4708 26 6 10.1282 1.0839 -8.6098 27 6 9.5504 1.2555 -10.0306 28 6 8.0905 1.6709 -9.7520 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3623 -0.0007 31 1 3.2746 -3.0417 1.8999 32 1 4.7244 -3.9608 1.4293 33 1 5.2115 -2.3252 3.1004 34 1 6.0102 -3.2183 -0.6931 35 1 6.0784 -1.5917 0.0265 36 1 4.4796 -1.4698 -2.2982 37 1 5.8059 0.1847 -3.9617 38 1 5.7365 -1.4417 -4.6818 39 1 5.5339 0.1424 -6.0398 40 1 5.6319 1.1323 -8.2883 41 1 9.7994 -0.0751 -5.9599 42 1 10.8528 0.2699 -8.5919 43 1 10.5937 2.0113 -8.2761 44 1 10.0799 2.0395 -10.5721 45 1 9.5872 0.3149 -10.5801 46 1 8.0050 2.7573 -9.7260 47 1 7.4277 1.2567 -10.5117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717783790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:44 Heat of formation + Delta-G solvation = -110.241358 kcal Electronic energy + Delta-G solvation = -27867.304579 eV Core-core repulsion = 23821.496332 eV Total energy + Delta-G solvation = -4045.808247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 19.50 seconds Orbital eigenvalues (eV) -41.63065 -40.78342 -39.44749 -38.62162 -36.48265 -35.71824 -35.29247 -33.47270 -32.50170 -31.06626 -29.79098 -29.30399 -27.79382 -26.20993 -25.23886 -23.81823 -22.17381 -21.75403 -21.68550 -21.21830 -19.88184 -18.96518 -18.33063 -18.21214 -17.50434 -17.21810 -16.85394 -16.58362 -16.47695 -16.14937 -15.80062 -15.63566 -15.31619 -15.04526 -14.84581 -14.54911 -14.42991 -14.38155 -14.24493 -13.71756 -13.55750 -13.40398 -13.18222 -12.89792 -12.81857 -12.65227 -12.49034 -12.39286 -12.23041 -12.02021 -11.88085 -11.79643 -11.66788 -11.41397 -11.12298 -10.95163 -10.76278 -10.15633 -9.80480 -9.33748 -9.02960 -8.00936 -5.33519 0.30834 0.39601 1.36985 1.41782 1.43567 1.47859 1.50171 2.48553 2.60439 2.69965 3.30013 3.42740 3.53570 3.61584 3.65597 3.70097 3.85402 3.92252 4.01814 4.02817 4.13087 4.20564 4.34241 4.36958 4.39100 4.47084 4.51936 4.60248 4.72868 4.78958 4.86118 4.95825 4.96309 5.02040 5.05332 5.15668 5.22326 5.30175 5.35064 5.36240 5.41040 5.65966 5.75205 5.78688 6.22422 6.28856 6.46515 7.01261 7.08634 7.09117 7.83127 8.02120 9.19896 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.002372 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.266554 B =11803.663781 C =13158.205570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.054 4.054 3 Si 0.941 3.059 4 H -0.271 1.271 5 H -0.304 1.304 6 H -0.268 1.268 7 C -0.220 4.220 8 H 0.069 0.931 9 N -0.740 5.740 10 C 0.166 3.834 11 H 0.086 0.914 12 C 0.064 3.936 13 O -0.585 6.585 14 C 0.128 3.872 15 N -0.707 5.707 16 C 0.513 3.487 17 O -0.571 6.571 18 C 0.043 3.957 19 O -0.316 6.316 20 C 0.109 3.891 21 C -0.215 4.215 22 C -0.073 4.073 23 C -0.146 4.146 24 C -0.070 4.070 25 C -0.159 4.159 26 C -0.084 4.084 27 C -0.116 4.116 28 C -0.077 4.077 29 H 0.256 0.744 30 H 0.363 0.637 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.388 0.612 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.416 0.584 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.335 -0.479 -18.398 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.246 4.246 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.231 1.231 6 H -0.193 1.193 7 C -0.351 4.351 8 H 0.087 0.913 9 N -0.383 5.383 10 C 0.057 3.943 11 H 0.104 0.896 12 C -0.017 4.017 13 O -0.392 6.392 14 C 0.004 3.996 15 N -0.361 5.361 16 C 0.299 3.701 17 O -0.450 6.450 18 C -0.035 4.035 19 O -0.229 6.229 20 C 0.065 3.935 21 C -0.233 4.233 22 C -0.091 4.091 23 C -0.146 4.146 24 C -0.070 4.070 25 C -0.178 4.178 26 C -0.121 4.121 27 C -0.153 4.153 28 C -0.114 4.114 29 H 0.065 0.935 30 H 0.196 0.804 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.236 0.764 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.253 0.747 37 H 0.129 0.871 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.142 0.858 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.071 -0.502 -18.534 25.890 hybrid contribution -0.740 0.811 1.190 1.619 sum 17.331 0.309 -17.344 24.521 Atomic orbital electron populations 1.69845 1.06841 1.26391 1.59899 1.25281 0.95764 1.00425 1.03088 0.85629 0.78191 0.80941 0.78249 1.19727 1.23084 1.19315 1.19013 0.82081 0.93500 1.40496 0.91320 1.42729 1.02422 1.03372 1.89795 1.20838 0.90616 0.88984 0.93814 0.89593 1.22824 0.93508 0.92026 0.93319 1.86467 1.72150 1.52698 1.27871 1.21472 0.97306 0.98841 0.82025 1.45816 1.09277 1.63147 1.17842 1.20437 0.84326 0.78381 0.86970 1.90704 1.27191 1.54133 1.72995 1.22587 0.85015 1.03632 0.92298 1.86080 1.29988 1.77667 1.29215 1.19058 0.95092 0.95272 0.84119 1.21418 0.97506 1.06649 0.97737 1.20729 0.98116 0.96559 0.93695 1.21023 0.92871 1.02027 0.98682 1.20689 0.97641 0.95858 0.92788 1.19956 0.95962 1.05877 0.95996 1.21176 0.94581 1.02635 0.93683 1.22321 0.94661 1.02897 0.95406 1.21119 0.97489 1.00862 0.91882 0.93485 0.80401 0.94583 0.91283 0.76377 0.89835 0.92341 0.74703 0.87081 0.85943 0.83563 0.83713 0.85797 0.89909 0.89170 0.88550 0.90524 0.89570 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.69 13.97 21.65 0.30 -59.39 16 2 C -0.05 -2.97 5.50 84.86 0.47 -2.51 16 3 Si 0.94 44.30 27.73 68.60 1.90 46.20 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 6 H -0.27 -12.18 6.52 99.48 0.65 -11.53 16 7 C -0.22 -11.34 10.41 84.03 0.87 -10.47 16 8 H 0.07 3.82 8.06 -2.91 -0.02 3.80 16 9 N -0.74 -31.20 4.31 -322.93 -1.39 -32.59 16 10 C 0.17 5.52 2.84 44.99 0.13 5.64 16 11 H 0.09 2.71 8.08 -2.39 -0.02 2.69 16 12 C 0.06 1.93 6.85 71.98 0.49 2.42 16 13 O -0.58 -18.18 12.64 -148.98 -1.88 -20.07 16 14 C 0.13 3.95 5.12 86.38 0.44 4.39 16 15 N -0.71 -20.64 5.39 -463.07 -2.49 -23.14 16 16 C 0.51 15.94 7.91 87.66 0.69 16.63 16 17 O -0.57 -22.60 16.50 15.99 0.26 -22.33 16 18 C 0.04 1.04 5.22 71.24 0.37 1.41 16 19 O -0.32 -9.39 9.67 -73.33 -0.71 -10.10 16 20 C 0.11 2.84 6.68 22.48 0.15 2.99 16 21 C -0.21 -4.59 9.04 22.34 0.20 -4.39 16 22 C -0.07 -1.37 10.03 22.29 0.22 -1.15 16 23 C -0.15 -2.66 6.15 -19.47 -0.12 -2.78 16 24 C -0.07 -1.39 6.13 -19.60 -0.12 -1.51 16 25 C -0.16 -3.90 9.98 22.40 0.22 -3.68 16 26 C -0.08 -1.11 6.77 30.52 0.21 -0.91 16 27 C -0.12 -1.10 7.07 31.50 0.22 -0.88 16 28 C -0.08 -0.90 6.79 30.62 0.21 -0.69 16 29 H 0.26 15.08 8.31 -92.70 -0.77 14.30 16 30 H 0.36 15.84 5.66 -92.71 -0.52 15.31 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.39 8.25 9.12 -74.06 -0.68 7.58 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 2.08 7.39 -2.39 -0.02 2.06 16 36 H 0.42 11.34 8.14 -92.71 -0.75 10.58 16 37 H 0.11 2.31 7.66 -2.38 -0.02 2.29 16 38 H 0.12 2.23 7.66 -2.39 -0.02 2.21 16 39 H 0.15 2.55 6.31 -2.91 -0.02 2.53 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -75.34 389.24 -0.34 -75.68 By element: Atomic # 1 Polarization: 42.21 SS G_CDS: -1.00 Total: 41.21 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 4.67 Total: 4.53 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -3.58 Total: -115.12 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -2.33 Total: -52.50 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.90 Total: 46.20 kcal Total: -75.34 -0.34 -75.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717783790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.558 kcal (2) G-P(sol) polarization free energy of solvation -75.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.50 seconds