Wall clock time and date at job start Tue Mar 31 2020 21:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47055 * 324.99804 * 10 9 7 12 12 C 1.52995 * 109.47120 * 84.99640 * 10 9 7 13 13 O 1.42899 * 109.47156 * 65.00268 * 12 10 9 14 14 C 1.52998 * 109.47009 * 204.99963 * 10 9 7 15 15 N 1.46500 * 109.47304 * 54.99714 * 14 10 9 16 16 C 1.34776 * 119.99630 * 179.97438 * 15 14 10 17 17 O 1.21279 * 120.00423 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.99649 * 179.97438 * 16 15 14 19 19 O 1.42895 * 109.47335 * 180.02562 * 18 16 15 20 20 C 1.35891 * 117.00418 * 180.02562 * 19 18 16 21 21 C 1.38748 * 120.09045 * 0.02562 * 20 19 18 22 22 C 1.38005 * 119.87774 * 179.97438 * 21 20 19 23 23 C 1.38540 * 120.29398 * 0.02562 * 22 21 20 24 24 C 1.38257 * 119.93719 * 359.97438 * 23 22 21 25 25 C 1.38421 * 119.90509 * 359.74035 * 24 23 22 26 26 C 1.51384 * 109.76035 * 180.02562 * 24 23 22 27 27 C 1.54343 * 105.16552 * 342.79902 * 26 24 23 28 28 C 1.51393 * 130.32748 * 180.02562 * 23 22 21 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47180 * 185.00052 * 12 10 9 32 32 H 1.09003 * 109.47292 * 304.99824 * 12 10 9 33 33 H 0.96704 * 113.99871 * 179.97438 * 13 12 10 34 34 H 1.09008 * 109.46958 * 174.99988 * 14 10 9 35 35 H 1.08993 * 109.47007 * 294.99451 * 14 10 9 36 36 H 0.96999 * 119.99793 * 0.02562 * 15 14 10 37 37 H 1.08999 * 109.47441 * 300.00684 * 18 16 15 38 38 H 1.09004 * 109.46729 * 60.00092 * 18 16 15 39 39 H 1.07997 * 120.05912 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.85213 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.91942 * 180.25650 * 25 24 23 42 42 H 1.08998 * 110.30160 * 223.87877 * 26 24 23 43 43 H 1.08994 * 110.38544 * 101.76524 * 26 24 23 44 44 H 1.08996 * 110.82162 * 268.13924 * 27 26 24 45 45 H 1.08997 * 110.98784 * 144.67302 * 27 26 24 46 46 H 1.09004 * 110.29820 * 316.11211 * 28 23 22 47 47 H 1.09003 * 110.29755 * 78.25579 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9664 -3.5493 -0.6042 12 6 2.4273 -4.0388 1.4232 13 8 1.2359 -4.2934 2.1701 14 6 1.1784 -4.7507 -0.6202 15 7 0.7267 -4.3311 -1.9492 16 6 -0.0652 -5.1417 -2.6788 17 8 -0.4041 -6.2183 -2.2351 18 6 -0.5303 -4.7098 -4.0456 19 8 -1.3517 -5.7315 -4.6142 20 6 -1.8562 -5.4987 -5.8543 21 6 -1.5667 -4.3116 -6.5116 22 6 -2.0810 -4.0800 -7.7711 23 6 -2.8858 -5.0275 -8.3824 24 6 -3.1758 -6.2112 -7.7296 25 6 -2.6566 -6.4490 -6.4686 26 6 -4.0656 -7.0717 -8.6011 27 6 -4.6427 -6.1107 -9.6620 28 6 -3.5610 -5.0123 -9.7374 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 3.0478 -4.9349 1.4124 32 1 2.9788 -3.2206 1.8865 33 1 1.3947 -4.5421 3.0910 34 1 1.7530 -5.6731 -0.7062 35 1 0.3134 -4.9200 0.0209 36 1 0.9981 -3.4701 -2.3042 37 1 -1.1054 -3.7878 -3.9593 38 1 0.3347 -4.5396 -4.6868 39 1 -0.9400 -3.5702 -6.0383 40 1 -1.8557 -3.1556 -8.2821 41 1 -2.8796 -7.3753 -5.9602 42 1 -4.8697 -7.5066 -8.0075 43 1 -3.4822 -7.8578 -9.0802 44 1 -5.5947 -5.6953 -9.3316 45 1 -4.7535 -6.6118 -10.6236 46 1 -4.0203 -4.0408 -9.9202 47 1 -2.8403 -5.2443 -10.5216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717783791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:54 Heat of formation + Delta-G solvation = -88.867186 kcal Electronic energy + Delta-G solvation = -27803.891086 eV Core-core repulsion = 23759.009693 eV Total energy + Delta-G solvation = -4044.881393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 24.10 seconds Orbital eigenvalues (eV) -40.69914 -39.61641 -38.41206 -37.19535 -35.10787 -34.90737 -33.77862 -31.77260 -31.47216 -29.31453 -28.61967 -27.93446 -26.92360 -24.94710 -23.48898 -23.02524 -21.18307 -21.05285 -20.38392 -19.99757 -17.99362 -17.78770 -17.15294 -16.73601 -16.40402 -15.99787 -15.95568 -15.69258 -15.28753 -14.77754 -14.67162 -14.28680 -13.98708 -13.73502 -13.58871 -13.46790 -13.36285 -13.16060 -13.09977 -12.68407 -12.46676 -12.19403 -11.93116 -11.74293 -11.54673 -11.47037 -11.45170 -10.92674 -10.84908 -10.80395 -10.69863 -10.49759 -10.06915 -9.69548 -9.53346 -9.24195 -9.03938 -8.96642 -8.76873 -8.15787 -7.16488 -6.19030 -3.21124 1.14920 1.26734 2.59102 2.74249 3.44544 3.47446 3.54522 3.65530 3.73124 4.25473 4.31484 4.56503 4.63373 4.69545 4.78779 4.81981 4.87191 4.95539 5.03858 5.05026 5.13133 5.25572 5.28201 5.38646 5.40702 5.42729 5.49189 5.51058 5.62100 5.66528 5.77765 5.84910 5.90200 5.91094 5.96972 6.11722 6.20667 6.22469 6.35364 6.46703 6.55834 6.59804 6.72690 7.25310 7.68052 7.74083 8.09705 8.38813 8.66570 9.10592 9.97482 10.12806 11.28446 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013650 B = 0.002272 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.780465 B =12322.065899 C =14000.322956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.040 4.040 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.340 4.340 8 H 0.064 0.936 9 N -0.725 5.725 10 C 0.171 3.829 11 H 0.068 0.932 12 C 0.060 3.940 13 O -0.562 6.562 14 C 0.119 3.881 15 N -0.710 5.710 16 C 0.513 3.487 17 O -0.530 6.530 18 C 0.041 3.959 19 O -0.289 6.289 20 C 0.134 3.866 21 C -0.208 4.208 22 C -0.065 4.065 23 C -0.140 4.140 24 C -0.061 4.061 25 C -0.139 4.139 26 C -0.082 4.082 27 C -0.121 4.121 28 C -0.077 4.077 29 H 0.257 0.743 30 H 0.372 0.628 31 H 0.028 0.972 32 H 0.050 0.950 33 H 0.365 0.635 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.410 0.590 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 -11.574 -16.548 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.238 4.238 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.471 4.471 8 H 0.082 0.918 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.086 0.914 12 C -0.022 4.022 13 O -0.366 6.366 14 C -0.005 4.005 15 N -0.364 5.364 16 C 0.297 3.703 17 O -0.406 6.406 18 C -0.037 4.037 19 O -0.201 6.201 20 C 0.088 3.912 21 C -0.227 4.227 22 C -0.083 4.083 23 C -0.141 4.141 24 C -0.061 4.061 25 C -0.157 4.157 26 C -0.119 4.119 27 C -0.158 4.158 28 C -0.114 4.114 29 H 0.069 0.931 30 H 0.206 0.794 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.210 0.790 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.246 0.754 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.385 -10.669 -16.687 20.093 hybrid contribution 0.668 -1.033 0.631 1.383 sum -2.717 -11.703 -16.056 20.053 Atomic orbital electron populations 1.70872 1.06057 1.28707 1.52576 1.25758 0.97010 1.00956 1.00115 0.83258 0.74231 0.75712 0.75822 1.21042 1.22334 1.22234 1.20008 0.91905 0.85679 1.49475 0.91760 1.42378 1.05065 1.00037 1.89278 1.20535 0.94942 0.86447 0.92063 0.91443 1.23011 0.86589 0.97398 0.95181 1.86546 1.32309 1.91824 1.25911 1.21599 0.99568 0.97101 0.82194 1.45828 1.50517 1.21688 1.18337 1.19903 0.79260 0.85068 0.86031 1.90719 1.55924 1.22191 1.71765 1.22509 0.95781 0.91617 0.93834 1.86132 1.63054 1.42532 1.28354 1.18845 0.94024 0.93870 0.84413 1.21209 1.06218 0.97947 0.97333 1.20388 0.95620 0.98398 0.93938 1.20481 1.00938 0.95440 0.97208 1.20302 0.96994 0.95638 0.93130 1.19769 1.00981 0.99956 0.95043 1.21056 0.97755 0.97357 0.95702 1.22293 0.98391 0.96208 0.98915 1.20967 0.96960 0.99627 0.93809 0.93142 0.79447 0.95342 0.93193 0.78966 0.91787 0.90487 0.75390 0.88642 0.89006 0.84981 0.85866 0.85255 0.90488 0.89997 0.90910 0.90561 0.90907 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.92 13.70 55.49 0.76 -27.16 16 2 C -0.04 -1.10 5.50 -17.43 -0.10 -1.19 16 3 Si 1.08 24.72 29.92 -169.99 -5.09 19.63 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.30 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.34 -8.84 9.93 -15.06 -0.15 -8.99 16 8 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 9 N -0.72 -16.78 4.51 -53.43 -0.24 -17.02 16 10 C 0.17 3.19 2.84 -67.93 -0.19 2.99 16 11 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 12 C 0.06 1.02 6.86 37.16 0.25 1.28 16 13 O -0.56 -9.93 12.64 -35.23 -0.45 -10.38 16 14 C 0.12 2.08 5.12 -4.04 -0.02 2.06 16 15 N -0.71 -11.67 5.39 -60.29 -0.32 -11.99 16 16 C 0.51 8.69 7.91 -10.98 -0.09 8.60 16 17 O -0.53 -10.98 16.50 -14.35 -0.24 -11.22 16 18 C 0.04 0.56 5.22 36.01 0.19 0.75 16 19 O -0.29 -4.47 9.67 -39.31 -0.38 -4.85 16 20 C 0.13 1.82 6.68 -39.26 -0.26 1.56 16 21 C -0.21 -2.46 9.04 -39.48 -0.36 -2.82 16 22 C -0.07 -0.70 10.03 -39.56 -0.40 -1.09 16 23 C -0.14 -1.45 6.14 -104.16 -0.64 -2.09 16 24 C -0.06 -0.65 6.13 -104.21 -0.64 -1.29 16 25 C -0.14 -1.74 9.98 -39.38 -0.39 -2.14 16 26 C -0.08 -0.64 6.77 -26.84 -0.18 -0.82 16 27 C -0.12 -0.78 7.08 -25.32 -0.18 -0.96 16 28 C -0.08 -0.58 6.77 -26.84 -0.18 -0.76 16 29 H 0.26 7.64 6.77 -40.82 -0.28 7.36 16 30 H 0.37 9.35 6.63 -40.82 -0.27 9.07 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.37 4.65 9.12 45.56 0.42 5.06 16 34 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.08 1.52 7.39 -51.93 -0.38 1.14 16 36 H 0.41 6.53 8.14 -40.82 -0.33 6.20 16 37 H 0.10 1.17 7.67 -51.93 -0.40 0.77 16 38 H 0.09 0.99 7.66 -51.93 -0.40 0.60 16 39 H 0.13 1.36 6.31 -52.49 -0.33 1.02 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -34.33 390.63 -9.65 -43.98 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -6.25 Total: 18.02 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -3.33 Total: -4.91 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.19 Total: -56.17 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.06 Total: -26.45 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.09 Total: 19.63 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.33 -9.65 -43.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717783791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.883 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.10 seconds