Wall clock time and date at job start Tue Mar 31 2020 21:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47055 * 324.99804 * 10 9 7 12 12 C 1.52995 * 109.47120 * 84.99640 * 10 9 7 13 13 O 1.42899 * 109.47156 * 65.00268 * 12 10 9 14 14 C 1.52998 * 109.47009 * 204.99963 * 10 9 7 15 15 N 1.46500 * 109.47304 * 54.99714 * 14 10 9 16 16 C 1.34776 * 119.99630 * 179.97438 * 15 14 10 17 17 O 1.21279 * 120.00423 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.99649 * 179.97438 * 16 15 14 19 19 O 1.42895 * 109.47335 * 180.02562 * 18 16 15 20 20 C 1.35891 * 117.00418 * 180.02562 * 19 18 16 21 21 C 1.38748 * 120.09045 * 0.02562 * 20 19 18 22 22 C 1.38005 * 119.87774 * 179.97438 * 21 20 19 23 23 C 1.38540 * 120.29398 * 0.02562 * 22 21 20 24 24 C 1.38257 * 119.93719 * 359.97438 * 23 22 21 25 25 C 1.38421 * 119.90509 * 359.74035 * 24 23 22 26 26 C 1.51384 * 109.76035 * 180.02562 * 24 23 22 27 27 C 1.54343 * 105.16552 * 342.79902 * 26 24 23 28 28 C 1.51393 * 130.32748 * 180.02562 * 23 22 21 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47180 * 185.00052 * 12 10 9 32 32 H 1.09003 * 109.47292 * 304.99824 * 12 10 9 33 33 H 0.96704 * 113.99871 * 179.97438 * 13 12 10 34 34 H 1.09008 * 109.46958 * 174.99988 * 14 10 9 35 35 H 1.08993 * 109.47007 * 294.99451 * 14 10 9 36 36 H 0.96999 * 119.99793 * 0.02562 * 15 14 10 37 37 H 1.08999 * 109.47441 * 300.00684 * 18 16 15 38 38 H 1.09004 * 109.46729 * 60.00092 * 18 16 15 39 39 H 1.07997 * 120.05912 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.85213 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.91942 * 180.25650 * 25 24 23 42 42 H 1.08998 * 110.30160 * 223.87877 * 26 24 23 43 43 H 1.08994 * 110.38544 * 101.76524 * 26 24 23 44 44 H 1.08996 * 110.82162 * 268.13924 * 27 26 24 45 45 H 1.08997 * 110.98784 * 144.67302 * 27 26 24 46 46 H 1.09004 * 110.29820 * 316.11211 * 28 23 22 47 47 H 1.09003 * 110.29755 * 78.25579 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9664 -3.5493 -0.6042 12 6 2.4273 -4.0388 1.4232 13 8 1.2359 -4.2934 2.1701 14 6 1.1784 -4.7507 -0.6202 15 7 0.7267 -4.3311 -1.9492 16 6 -0.0652 -5.1417 -2.6788 17 8 -0.4041 -6.2183 -2.2351 18 6 -0.5303 -4.7098 -4.0456 19 8 -1.3517 -5.7315 -4.6142 20 6 -1.8562 -5.4987 -5.8543 21 6 -1.5667 -4.3116 -6.5116 22 6 -2.0810 -4.0800 -7.7711 23 6 -2.8858 -5.0275 -8.3824 24 6 -3.1758 -6.2112 -7.7296 25 6 -2.6566 -6.4490 -6.4686 26 6 -4.0656 -7.0717 -8.6011 27 6 -4.6427 -6.1107 -9.6620 28 6 -3.5610 -5.0123 -9.7374 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 3.0478 -4.9349 1.4124 32 1 2.9788 -3.2206 1.8865 33 1 1.3947 -4.5421 3.0910 34 1 1.7530 -5.6731 -0.7062 35 1 0.3134 -4.9200 0.0209 36 1 0.9981 -3.4701 -2.3042 37 1 -1.1054 -3.7878 -3.9593 38 1 0.3347 -4.5396 -4.6868 39 1 -0.9400 -3.5702 -6.0383 40 1 -1.8557 -3.1556 -8.2821 41 1 -2.8796 -7.3753 -5.9602 42 1 -4.8697 -7.5066 -8.0075 43 1 -3.4822 -7.8578 -9.0802 44 1 -5.5947 -5.6953 -9.3316 45 1 -4.7535 -6.6118 -10.6236 46 1 -4.0203 -4.0408 -9.9202 47 1 -2.8403 -5.2443 -10.5216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717783791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:12 Heat of formation + Delta-G solvation = -113.033300 kcal Electronic energy + Delta-G solvation = -27804.939007 eV Core-core repulsion = 23759.009693 eV Total energy + Delta-G solvation = -4045.929315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 27.14 seconds Orbital eigenvalues (eV) -41.65717 -40.81691 -39.47521 -38.66019 -36.58215 -35.74271 -35.47374 -33.29279 -32.49435 -30.60634 -29.55489 -29.25981 -27.79351 -26.28714 -25.45154 -23.83547 -22.20462 -21.87989 -21.69134 -21.23230 -19.58153 -18.99911 -18.47266 -18.19123 -17.53515 -17.26973 -16.95996 -16.54493 -16.34903 -16.16106 -15.85209 -15.61494 -15.44394 -15.29309 -14.99588 -14.71338 -14.44743 -14.40555 -13.73010 -13.68796 -13.45867 -13.38989 -13.08170 -12.88553 -12.71692 -12.54725 -12.50375 -12.25472 -12.09089 -12.01543 -11.88545 -11.68160 -11.42451 -11.28069 -11.12830 -10.93029 -10.79516 -10.20100 -9.81586 -9.11956 -9.04162 -8.32669 -5.28640 0.29678 0.38276 1.37571 1.47170 1.61872 1.70574 1.86439 2.57053 2.68805 2.73597 3.41465 3.48299 3.51429 3.59262 3.65540 3.72601 3.82772 3.89636 3.97812 4.00095 4.11922 4.20529 4.31690 4.33533 4.37990 4.45321 4.45803 4.51834 4.72169 4.73657 4.86099 4.88656 4.95909 5.01248 5.04794 5.11124 5.21945 5.29469 5.31476 5.34373 5.40596 5.63993 5.64701 5.74220 6.26244 6.42124 6.53061 6.95470 7.03890 7.10526 7.99804 8.14281 9.17811 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013650 B = 0.002272 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.780465 B =12322.065899 C =14000.322956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.102 4.102 3 Si 1.125 2.875 4 H -0.301 1.301 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.325 4.325 8 H 0.073 0.927 9 N -0.734 5.734 10 C 0.167 3.833 11 H 0.081 0.919 12 C 0.064 3.936 13 O -0.586 6.586 14 C 0.130 3.870 15 N -0.704 5.704 16 C 0.512 3.488 17 O -0.573 6.573 18 C 0.047 3.953 19 O -0.317 6.317 20 C 0.108 3.892 21 C -0.215 4.215 22 C -0.072 4.072 23 C -0.145 4.145 24 C -0.069 4.069 25 C -0.159 4.159 26 C -0.084 4.084 27 C -0.116 4.116 28 C -0.076 4.076 29 H 0.243 0.757 30 H 0.359 0.641 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.387 0.613 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.414 0.586 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.083 0.917 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 -11.453 -18.474 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.293 4.293 3 Si 0.951 3.049 4 H -0.227 1.227 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.456 4.456 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.058 3.942 11 H 0.099 0.901 12 C -0.017 4.017 13 O -0.393 6.393 14 C 0.005 3.995 15 N -0.357 5.357 16 C 0.298 3.702 17 O -0.452 6.452 18 C -0.031 4.031 19 O -0.230 6.230 20 C 0.063 3.937 21 C -0.233 4.233 22 C -0.090 4.090 23 C -0.145 4.145 24 C -0.070 4.070 25 C -0.178 4.178 26 C -0.120 4.120 27 C -0.153 4.153 28 C -0.113 4.113 29 H 0.053 0.947 30 H 0.190 0.810 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.235 0.765 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.251 0.749 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.142 0.858 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.225 -10.588 -18.610 21.526 hybrid contribution 0.337 -1.189 1.224 1.740 sum -1.888 -11.777 -17.386 21.084 Atomic orbital electron populations 1.70990 1.07348 1.27867 1.56133 1.27039 0.96988 1.04478 1.00841 0.82643 0.73289 0.71865 0.77085 1.22718 1.20972 1.19891 1.20339 0.92369 0.86520 1.46357 0.90898 1.42491 1.04528 1.01023 1.89500 1.20787 0.95013 0.84821 0.93585 0.90075 1.22867 0.86617 0.98652 0.93529 1.86502 1.33007 1.91985 1.27769 1.21430 0.98495 0.97367 0.82176 1.45777 1.50279 1.21697 1.17933 1.20474 0.78377 0.84299 0.87036 1.90693 1.57475 1.24059 1.72981 1.22523 0.96989 0.91390 0.92218 1.86074 1.63846 1.43482 1.29597 1.19082 0.95310 0.95180 0.84124 1.21405 1.06497 0.97535 0.97887 1.20723 0.95293 0.99400 0.93617 1.20966 1.00226 0.94871 0.98451 1.20706 0.96973 0.96646 0.92636 1.19961 1.01741 0.99960 0.96130 1.21176 0.97533 0.97604 0.95723 1.22329 0.97944 0.95567 0.99460 1.21070 0.97336 1.00643 0.92275 0.94675 0.80960 0.91456 0.94578 0.76522 0.90109 0.93048 0.74926 0.87418 0.85954 0.83756 0.83628 0.85816 0.90073 0.88889 0.90753 0.88317 0.89854 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.11 13.70 21.65 0.30 -58.82 16 2 C -0.10 -5.58 5.50 84.86 0.47 -5.12 16 3 Si 1.13 49.38 29.92 68.60 2.05 51.43 16 4 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.32 -16.63 9.93 84.03 0.83 -15.80 16 8 H 0.07 3.57 7.83 -2.91 -0.02 3.54 16 9 N -0.73 -33.85 4.51 -322.95 -1.46 -35.30 16 10 C 0.17 6.02 2.84 44.99 0.13 6.15 16 11 H 0.08 2.72 8.08 -2.39 -0.02 2.70 16 12 C 0.06 2.08 6.86 71.98 0.49 2.57 16 13 O -0.59 -20.17 12.64 -148.98 -1.88 -22.05 16 14 C 0.13 4.47 5.12 86.38 0.44 4.91 16 15 N -0.70 -23.01 5.39 -463.06 -2.49 -25.51 16 16 C 0.51 17.53 7.91 87.66 0.69 18.22 16 17 O -0.57 -24.38 16.50 16.01 0.26 -24.11 16 18 C 0.05 1.27 5.22 71.24 0.37 1.64 16 19 O -0.32 -10.11 9.67 -73.29 -0.71 -10.82 16 20 C 0.11 2.99 6.68 22.48 0.15 3.14 16 21 C -0.21 -4.95 9.04 22.34 0.20 -4.75 16 22 C -0.07 -1.45 10.03 22.29 0.22 -1.22 16 23 C -0.14 -2.78 6.14 -19.57 -0.12 -2.90 16 24 C -0.07 -1.46 6.13 -19.60 -0.12 -1.58 16 25 C -0.16 -4.12 9.98 22.40 0.22 -3.90 16 26 C -0.08 -1.17 6.77 30.52 0.21 -0.96 16 27 C -0.12 -1.19 7.08 31.51 0.22 -0.97 16 28 C -0.08 -0.95 6.77 30.53 0.21 -0.74 16 29 H 0.24 14.88 6.77 -92.71 -0.63 14.26 16 30 H 0.36 18.41 6.63 -92.71 -0.61 17.79 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.39 9.34 9.12 -74.05 -0.68 8.66 16 34 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.05 2.06 7.39 -2.39 -0.02 2.04 16 36 H 0.41 13.00 8.14 -92.71 -0.75 12.24 16 37 H 0.11 2.63 7.67 -2.39 -0.02 2.61 16 38 H 0.12 2.51 7.66 -2.38 -0.02 2.49 16 39 H 0.14 2.81 6.31 -2.91 -0.02 2.79 16 40 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 41 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -75.61 390.63 -0.19 -75.80 By element: Atomic # 1 Polarization: 51.58 SS G_CDS: -0.89 Total: 50.69 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 4.62 Total: -1.31 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -3.65 Total: -119.63 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -2.33 Total: -56.99 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.05 Total: 51.43 kcal Total: -75.61 -0.19 -75.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717783791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.235 kcal (2) G-P(sol) polarization free energy of solvation -75.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.15 seconds