Wall clock time and date at job start Tue Mar 31 2020 19:44:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08996 * 109.46908 * 2 1
4 4 C 1.52999 * 109.47091 * 239.99819 * 2 1 3
5 5 N 1.46496 * 109.47346 * 184.99673 * 4 2 1
6 6 C 1.46495 * 120.00628 * 270.00398 * 5 4 2
7 7 C 1.34774 * 119.99544 * 90.00236 * 5 4 2
8 8 O 1.21279 * 120.00472 * 0.02562 * 7 5 4
9 9 C 1.50706 * 120.00020 * 180.02562 * 7 5 4
10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 5
11 11 C 1.35124 * 125.69607 * 124.99655 * 10 9 7
12 12 N 1.36811 * 107.18724 * 179.97438 * 11 10 9
13 13 C 1.36605 * 132.54427 * 180.02562 * 12 11 10
14 14 C 1.35131 * 120.57549 * 179.97438 * 13 12 11
15 15 F 1.35095 * 119.87950 * 180.02562 * 14 13 12
16 16 C 1.40610 * 120.24348 * 0.03421 * 14 13 12
17 17 C 1.36013 * 119.69151 * 359.97438 * 16 14 13
18 18 C 1.37030 * 107.01210 * 0.02562 * 12 11 10
19 19 N 1.32603 * 108.03511 * 359.75426 * 18 12 11
20 20 N 1.46500 * 109.47061 * 120.00083 * 2 1 3
21 21 C 1.36935 * 119.99643 * 274.99840 * 20 2 1
22 22 H 1.08000 * 120.00340 * 0.02562 * 21 20 2
23 23 C 1.38813 * 119.99755 * 180.02562 * 21 20 2
24 24 N 1.31622 * 119.99953 * 0.02562 * 23 21 20
25 25 Si 1.86800 * 120.00386 * 179.97438 * 23 21 20
26 26 H 1.48510 * 109.46884 * 0.02562 * 25 23 21
27 27 H 1.48497 * 109.47483 * 119.99640 * 25 23 21
28 28 H 1.48497 * 109.47391 * 240.00116 * 25 23 21
29 29 H 1.09008 * 109.47117 * 300.00011 * 1 2 3
30 30 H 1.09003 * 109.47550 * 59.99858 * 1 2 3
31 31 H 1.08999 * 109.47414 * 179.97438 * 1 2 3
32 32 H 1.09008 * 109.46554 * 64.99916 * 4 2 1
33 33 H 1.09003 * 109.47253 * 305.00692 * 4 2 1
34 34 H 1.08997 * 109.47477 * 270.00204 * 6 5 4
35 35 H 1.09004 * 109.46971 * 29.99775 * 6 5 4
36 36 H 1.08993 * 109.47768 * 149.99839 * 6 5 4
37 37 H 1.09001 * 109.46953 * 299.99667 * 9 7 5
38 38 H 1.09000 * 109.47318 * 59.99264 * 9 7 5
39 39 H 1.07998 * 126.40929 * 0.02562 * 11 10 9
40 40 H 1.08003 * 119.71092 * 359.97438 * 13 12 11
41 41 H 1.08003 * 120.15327 * 179.97438 * 16 14 13
42 42 H 1.07999 * 120.31207 * 180.02562 * 17 16 14
43 43 H 0.96997 * 119.99838 * 95.00163 * 20 2 1
44 44 H 0.96998 * 120.00059 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2492
5 7 3.5000 -0.8264 -1.1906
6 6 4.3343 0.2340 -1.7613
7 6 4.0756 -1.8987 -0.6116
8 8 3.3850 -2.7768 -0.1396
9 6 5.5776 -2.0066 -0.5508
10 6 5.9615 -3.2894 0.1406
11 6 6.7724 -4.2451 -0.3644
12 7 6.8619 -5.2366 0.5741
13 6 7.5345 -6.4253 0.6007
14 6 7.4509 -7.2385 1.6767
15 9 8.1224 -8.4106 1.6881
16 6 6.6675 -6.8692 2.7843
17 6 5.9933 -5.6880 2.7689
18 6 6.0910 -4.8510 1.6394
19 7 5.5611 -3.6689 1.3562
20 7 2.0183 -0.6906 1.1962
21 6 2.1491 -0.0074 2.3757
22 1 1.8919 1.0403 2.4243
23 6 2.6123 -0.6617 3.5090
24 7 2.9262 -1.9385 3.4496
25 14 2.7914 0.2703 5.1179
26 1 2.3763 1.6825 4.9208
27 1 1.9312 -0.3581 6.1525
28 1 4.2085 0.2274 5.5597
29 1 -0.3634 0.5139 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 1.7515 -0.1583 -2.1369
33 1 1.6053 -1.7198 -1.2952
34 1 4.5424 0.0093 -2.8074
35 1 3.8090 1.1866 -1.6919
36 1 5.2721 0.2952 -1.2093
37 1 5.9833 -2.0041 -1.5625
38 1 5.9806 -1.1595 0.0043
39 1 7.2595 -4.2289 -1.3281
40 1 8.1383 -6.7177 -0.2457
41 1 6.6014 -7.5204 3.6434
42 1 5.3889 -5.3942 3.6144
43 1 2.2490 -1.6318 1.1526
44 1 3.2503 -2.3956 4.2414
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725501802.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:44:18
Heat of formation + Delta-G solvation = 17.790144 kcal
Electronic energy + Delta-G solvation = -29186.697894 eV
Core-core repulsion = 25055.273955 eV
Total energy + Delta-G solvation = -4131.423939 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 334.155 amu
Computer time = 29.44 seconds
Orbital eigenvalues (eV)
-50.06409 -43.74532 -40.67816 -38.23717 -37.33632 -35.78803 -34.68968 -33.86199
-32.60983 -30.49024 -30.04211 -29.00181 -27.92249 -26.35353 -25.51601 -24.51170
-23.72679 -22.19471 -21.29747 -19.97429 -19.28158 -19.07211 -18.59015 -17.75718
-17.34952 -17.18988 -16.89272 -16.68386 -16.23323 -16.10642 -16.00478 -15.52704
-15.46491 -14.91947 -14.73443 -14.43152 -14.27592 -14.07985 -13.75431 -13.58051
-13.49106 -13.16157 -12.99388 -12.90926 -12.81075 -12.66169 -12.59757 -12.34699
-12.20292 -12.05616 -12.01843 -11.74990 -11.47927 -10.85966 -10.76072 -10.47112
-9.53824 -9.28595 -8.85564 -8.75672 -7.66894 -4.97948 -0.36403 0.17371
1.44119 1.45575 1.51174 1.54620 1.78693 2.01521 2.37492 2.58661
2.64377 2.95954 3.24290 3.40983 3.57870 3.77946 3.84428 3.95199
4.05215 4.15703 4.26745 4.36496 4.44626 4.49557 4.58299 4.60456
4.69096 4.71994 4.78925 4.82039 4.87194 4.89365 4.98952 5.01487
5.09156 5.13653 5.32526 5.45059 5.54068 5.62426 5.64115 5.90870
6.10322 6.45663 6.72845 7.09981 7.52480 7.64722 8.41519 8.65588
9.50043
Molecular weight = 334.15amu
Principal moments of inertia in cm(-1)
A = 0.011332 B = 0.003978 C = 0.003198
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2470.342980 B = 7037.521025 C = 8753.789072
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.145 3.855
3 H 0.044 0.956
4 C 0.119 3.881
5 N -0.615 5.615
6 C 0.076 3.924
7 C 0.511 3.489
8 O -0.557 6.557
9 C -0.048 4.048
10 C 0.043 3.957
11 C -0.068 4.068
12 N -0.357 5.357
13 C 0.024 3.976
14 C 0.075 3.925
15 F -0.119 7.119
16 C -0.127 4.127
17 C -0.061 4.061
18 C 0.174 3.826
19 N -0.476 5.476
20 N -0.736 5.736
21 C -0.246 4.246
22 H 0.063 0.937
23 C -0.068 4.068
24 N -0.928 5.928
25 Si 0.955 3.045
26 H -0.269 1.269
27 H -0.299 1.299
28 H -0.300 1.300
29 H 0.032 0.968
30 H 0.079 0.921
31 H 0.031 0.969
32 H 0.117 0.883
33 H 0.050 0.950
34 H 0.087 0.913
35 H 0.074 0.926
36 H 0.074 0.926
37 H 0.153 0.847
38 H 0.102 0.898
39 H 0.235 0.765
40 H 0.211 0.789
41 H 0.179 0.821
42 H 0.149 0.851
43 H 0.387 0.613
44 H 0.239 0.761
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.853 -5.048 -15.090 20.454
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.035 3.965
3 H 0.062 0.938
4 C -0.005 4.005
5 N -0.348 5.348
6 C -0.066 4.066
7 C 0.299 3.701
8 O -0.434 6.434
9 C -0.088 4.088
10 C -0.091 4.091
11 C -0.199 4.199
12 N -0.029 5.029
13 C -0.099 4.099
14 C 0.053 3.947
15 F -0.097 7.097
16 C -0.151 4.151
17 C -0.081 4.081
18 C -0.069 4.069
19 N -0.194 5.194
20 N -0.381 5.381
21 C -0.378 4.378
22 H 0.081 0.919
23 C -0.262 4.262
24 N -0.577 5.577
25 Si 0.786 3.214
26 H -0.194 1.194
27 H -0.227 1.227
28 H -0.228 1.228
29 H 0.051 0.949
30 H 0.098 0.902
31 H 0.050 0.950
32 H 0.135 0.865
33 H 0.069 0.931
34 H 0.105 0.895
35 H 0.093 0.907
36 H 0.092 0.908
37 H 0.171 0.829
38 H 0.120 0.880
39 H 0.251 0.749
40 H 0.228 0.772
41 H 0.196 0.804
42 H 0.166 0.834
43 H 0.224 0.776
44 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges 12.030 -4.949 -14.288 19.322
hybrid contribution 0.278 -0.441 1.225 1.331
sum 12.307 -5.389 -13.062 18.739
Atomic orbital electron populations
1.22269 0.98034 1.00204 1.00926 1.20949 0.92787 0.95425 0.87376
0.93830 1.21684 0.80218 1.00638 0.97936 1.47735 1.06669 1.21533
1.58900 1.22002 0.95265 0.90036 0.99276 1.20769 0.91088 0.81624
0.76603 1.90695 1.65565 1.41928 1.45245 1.20070 0.91996 0.93762
1.02949 1.20724 0.98227 0.98088 0.92091 1.22929 1.09842 0.89130
0.98001 1.42715 1.31109 1.14215 1.14865 1.21689 1.00767 0.85503
1.01957 1.16564 0.98286 0.84345 0.95551 1.91552 1.78028 1.43475
1.96685 1.21252 0.97135 0.96924 0.99746 1.20289 0.99667 0.92531
0.95643 1.21415 0.98278 0.95080 0.92168 1.70979 1.22189 1.09591
1.16674 1.42944 1.78000 1.11490 1.05653 1.19442 1.35969 0.93548
0.88866 0.91868 1.25466 1.03456 0.96790 1.00508 1.70000 1.50656
1.09352 1.27682 0.85340 0.76308 0.78265 0.81438 1.19361 1.22706
1.22778 0.94873 0.90189 0.95017 0.86531 0.93103 0.89492 0.90686
0.90760 0.82913 0.88019 0.74894 0.77190 0.80385 0.83378 0.77648
0.95148
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.81 9.49 71.98 0.68 -5.12 16
2 C 0.14 6.02 3.20 44.99 0.14 6.16 16
3 H 0.04 1.78 8.08 -2.39 -0.02 1.76 16
4 C 0.12 4.04 5.14 86.38 0.44 4.48 16
5 N -0.61 -19.97 2.77 -846.77 -2.35 -22.32 16
6 C 0.08 1.55 10.24 127.77 1.31 2.86 16
7 C 0.51 20.21 6.96 87.66 0.61 20.82 16
8 O -0.56 -28.84 12.88 -3.02 -0.04 -28.88 16
9 C -0.05 -1.44 4.81 29.10 0.14 -1.30 16
10 C 0.04 1.52 5.84 41.59 0.24 1.77 16
11 C -0.07 -1.77 11.63 83.20 0.97 -0.80 16
12 N -0.36 -10.14 2.95 -351.94 -1.04 -11.18 16
13 C 0.02 0.48 10.92 83.23 0.91 1.39 16
14 C 0.07 1.59 7.25 22.13 0.16 1.75 16
15 F -0.12 -2.25 17.26 44.97 0.78 -1.48 16
16 C -0.13 -2.99 10.05 22.33 0.22 -2.76 16
17 C -0.06 -1.99 10.10 22.41 0.23 -1.76 16
18 C 0.17 6.62 7.81 134.10 1.05 7.67 16
19 N -0.48 -21.88 10.68 -182.42 -1.95 -23.83 16
20 N -0.74 -40.77 4.52 -322.95 -1.46 -42.23 16
21 C -0.25 -14.76 9.93 84.03 0.83 -13.92 16
22 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16
23 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16
24 N -0.93 -61.99 13.06 21.65 0.28 -61.71 16
25 Si 0.96 49.94 29.55 68.60 2.03 51.97 16
26 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16
27 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16
28 H -0.30 -15.76 7.11 99.48 0.71 -15.05 16
29 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16
30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16
31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
32 H 0.12 2.77 8.07 -2.38 -0.02 2.75 16
33 H 0.05 2.00 7.42 -2.39 -0.02 1.98 16
34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16
35 H 0.07 1.44 8.07 -2.38 -0.02 1.42 16
36 H 0.07 1.43 6.44 -2.39 -0.02 1.42 16
37 H 0.15 2.70 8.07 -2.39 -0.02 2.68 16
38 H 0.10 3.13 7.40 -2.39 -0.02 3.12 16
39 H 0.23 3.19 8.06 -2.91 -0.02 3.16 16
40 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16
41 H 0.18 3.04 8.06 -2.91 -0.02 3.01 16
42 H 0.15 5.08 8.06 -2.91 -0.02 5.05 16
43 H 0.39 23.91 5.02 -92.71 -0.47 23.45 16
44 H 0.24 15.74 8.31 -92.71 -0.77 14.97 16
Total: -1.00 -93.27 373.38 5.22 -88.04
By element:
Atomic # 1 Polarization: 33.57 SS G_CDS: 0.56 Total: 34.13 kcal
Atomic # 6 Polarization: 9.08 SS G_CDS: 8.41 Total: 17.49 kcal
Atomic # 7 Polarization: -154.76 SS G_CDS: -6.51 Total: -161.27 kcal
Atomic # 8 Polarization: -28.84 SS G_CDS: -0.04 Total: -28.88 kcal
Atomic # 9 Polarization: -2.25 SS G_CDS: 0.78 Total: -1.48 kcal
Atomic # 14 Polarization: 49.94 SS G_CDS: 2.03 Total: 51.97 kcal
Total: -93.27 5.22 -88.04 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725501802.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.834 kcal
(2) G-P(sol) polarization free energy of solvation -93.265 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.043 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.790 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 29.44 seconds