Wall clock time and date at job start Tue Mar 31 2020 19:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 N 1.46501 * 109.47349 * 175.00381 * 4 2 1 6 6 C 1.46500 * 119.99382 * 269.99867 * 5 4 2 7 7 C 1.34776 * 120.00288 * 89.99689 * 5 4 2 8 8 O 1.21276 * 119.99952 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99616 * 180.02562 * 7 5 4 10 10 C 1.50696 * 109.46722 * 179.97438 * 9 7 5 11 11 C 1.35137 * 125.69285 * 125.00151 * 10 9 7 12 12 N 1.36815 * 107.18183 * 179.97438 * 11 10 9 13 13 C 1.36611 * 132.53603 * 180.02562 * 12 11 10 14 14 C 1.35127 * 120.56925 * 179.97438 * 13 12 11 15 15 F 1.35105 * 119.87452 * 180.02562 * 14 13 12 16 16 C 1.40612 * 120.25002 * 0.04218 * 14 13 12 17 17 C 1.36011 * 119.68508 * 359.97438 * 16 14 13 18 18 C 1.37024 * 107.01987 * 359.97438 * 12 11 10 19 19 N 1.32611 * 108.02885 * 359.75990 * 18 12 11 20 20 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 31 31 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 32 32 H 1.09009 * 109.46837 * 294.99855 * 4 2 1 33 33 H 1.09000 * 109.47433 * 54.99587 * 4 2 1 34 34 H 1.09000 * 109.47354 * 90.00395 * 6 5 4 35 35 H 1.09009 * 109.46833 * 209.99836 * 6 5 4 36 36 H 1.08999 * 109.47622 * 329.99348 * 6 5 4 37 37 H 1.08994 * 109.47062 * 299.99630 * 9 7 5 38 38 H 1.08993 * 109.47169 * 59.99970 * 9 7 5 39 39 H 1.08000 * 126.40573 * 359.97438 * 11 10 9 40 40 H 1.07997 * 119.71474 * 359.97438 * 13 12 11 41 41 H 1.08005 * 120.15908 * 179.97438 * 16 14 13 42 42 H 1.08005 * 120.31192 * 180.02562 * 17 16 14 43 43 H 0.97000 * 119.99792 * 264.99726 * 20 2 1 44 44 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5612 7 6 4.2676 0.1492 1.7156 8 8 3.7495 1.1143 2.2362 9 6 5.7695 0.0413 1.6547 10 6 6.3868 1.2519 2.3061 11 6 7.2856 1.2321 3.3151 12 7 7.5896 2.5328 3.6110 13 6 8.4268 3.0996 4.5299 14 6 8.5451 4.4429 4.6153 15 9 9.3776 4.9884 5.5289 16 6 7.8047 5.2752 3.7572 17 6 6.9679 4.7219 2.8387 18 6 6.8572 3.3193 2.7610 19 7 6.1423 2.5226 1.9782 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4242 23 6 2.6172 -0.6605 -3.5077 24 7 2.9303 -1.9375 -3.4485 25 14 2.8029 0.2732 -5.1149 26 1 4.1654 0.8587 -5.1927 27 1 2.5981 -0.6569 -6.2543 28 1 1.7929 1.3602 -5.1754 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 4.2798 -1.7932 -0.4994 35 1 5.0864 -2.1898 1.0370 36 1 3.4770 -2.8600 0.6778 37 1 6.0907 -0.8579 2.1802 38 1 6.0880 -0.0128 0.6137 39 1 7.6884 0.3539 3.7976 40 1 8.9989 2.4685 5.1937 41 1 7.9001 6.3488 3.8270 42 1 6.3948 5.3516 2.1743 43 1 2.2490 -1.6318 -1.1526 44 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725501807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:57 Heat of formation + Delta-G solvation = 34.015221 kcal Electronic energy + Delta-G solvation = -28300.695197 eV Core-core repulsion = 24169.974830 eV Total energy + Delta-G solvation = -4130.720366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 15.25 seconds Orbital eigenvalues (eV) -49.41561 -42.98232 -39.44903 -37.43566 -36.11947 -34.11206 -33.94243 -32.24704 -31.54361 -29.32156 -28.82319 -28.01654 -26.64208 -25.20861 -23.87922 -23.42967 -22.97136 -21.18255 -20.00868 -18.84859 -18.40150 -17.86487 -17.21018 -16.74559 -16.60150 -16.34045 -15.69802 -15.44704 -15.32827 -15.16925 -14.75106 -14.53288 -14.01392 -13.74691 -13.70312 -13.34999 -13.19778 -12.80533 -12.52964 -12.17517 -12.09995 -11.97772 -11.92961 -11.76634 -11.42315 -11.30025 -11.28196 -11.15531 -10.80181 -10.63233 -10.27670 -10.08906 -10.01068 -9.59138 -9.34355 -8.87434 -8.74481 -8.11812 -8.00646 -6.87664 -5.72530 -2.98334 0.32037 0.90044 2.21404 2.56243 3.12633 3.23184 3.47403 3.53117 3.54546 3.60753 3.67986 3.89940 4.07724 4.40114 4.55247 4.65186 4.87704 4.93320 5.10309 5.18241 5.36858 5.49761 5.54599 5.55835 5.60837 5.63580 5.65136 5.75397 5.77868 5.92545 6.00477 6.13437 6.20392 6.35732 6.41363 6.42424 6.53839 6.71479 6.79182 6.92094 6.97671 7.25409 7.77926 7.79839 7.90448 8.47327 8.70305 9.58860 10.15521 10.52168 11.50485 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.002692 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.496522 B =10400.230179 C =11061.042478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.052 0.948 4 C 0.114 3.886 5 N -0.598 5.598 6 C 0.076 3.924 7 C 0.520 3.480 8 O -0.533 6.533 9 C -0.062 4.062 10 C 0.090 3.910 11 C -0.084 4.084 12 N -0.353 5.353 13 C 0.018 3.982 14 C 0.080 3.920 15 F -0.124 7.124 16 C -0.145 4.145 17 C -0.032 4.032 18 C 0.204 3.796 19 N -0.441 5.441 20 N -0.719 5.719 21 C -0.225 4.225 22 H 0.067 0.933 23 C -0.016 4.016 24 N -0.937 5.937 25 Si 0.903 3.097 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.186 0.814 40 H 0.171 0.829 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.382 0.618 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.102 5.439 18.283 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.070 0.930 4 C -0.010 4.010 5 N -0.331 5.331 6 C -0.067 4.067 7 C 0.306 3.694 8 O -0.409 6.409 9 C -0.103 4.103 10 C -0.044 4.044 11 C -0.215 4.215 12 N -0.025 5.025 13 C -0.106 4.106 14 C 0.057 3.943 15 F -0.103 7.103 16 C -0.169 4.169 17 C -0.052 4.052 18 C -0.039 4.039 19 N -0.159 5.159 20 N -0.361 5.361 21 C -0.357 4.357 22 H 0.085 0.915 23 C -0.211 4.211 24 N -0.587 5.587 25 Si 0.735 3.265 26 H -0.219 1.219 27 H -0.220 1.220 28 H -0.209 1.209 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.203 0.797 40 H 0.188 0.812 41 H 0.171 0.829 42 H 0.181 0.819 43 H 0.216 0.784 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.335 6.275 17.847 22.054 hybrid contribution 0.917 -0.176 -0.246 0.966 sum 12.252 6.100 17.602 22.297 Atomic orbital electron populations 1.22367 0.98990 1.00697 1.00193 1.20657 0.91797 0.96418 0.86804 0.92984 1.21809 0.78966 1.00882 0.99298 1.47563 1.06597 1.21412 1.57487 1.21934 0.97171 0.87403 1.00185 1.20061 0.88462 0.82403 0.78444 1.90690 1.74722 1.30542 1.44975 1.20080 0.93150 0.93870 1.03178 1.20228 0.96030 0.92807 0.95381 1.22370 1.08359 0.84926 1.05895 1.42457 1.28175 1.08018 1.23865 1.21126 0.98569 0.93933 0.96940 1.16584 0.95119 0.90069 0.92486 1.91548 1.69131 1.85531 1.64102 1.21030 0.98106 1.01299 0.96436 1.20220 0.97356 0.89646 0.98010 1.21070 0.96288 0.93560 0.92949 1.70768 1.20684 1.00718 1.23743 1.42384 1.78111 1.10404 1.05207 1.19243 1.35297 0.93799 0.87338 0.91463 1.24643 1.02617 0.95994 0.97830 1.69633 1.51708 1.08538 1.28792 0.86238 0.77802 0.78623 0.83878 1.21883 1.21962 1.20918 0.93566 0.94404 0.92644 0.90432 0.91204 0.89810 0.92293 0.91481 0.87581 0.86758 0.79679 0.81165 0.82855 0.81939 0.78424 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.49 37.16 0.35 -2.69 16 2 C 0.15 3.21 3.20 -67.93 -0.22 3.00 16 3 H 0.05 1.23 8.08 -51.93 -0.42 0.81 16 4 C 0.11 1.99 5.07 -4.04 -0.02 1.97 16 5 N -0.60 -10.13 2.73 -181.56 -0.50 -10.62 16 6 C 0.08 1.13 9.02 59.85 0.54 1.67 16 7 C 0.52 9.20 7.66 -10.98 -0.08 9.11 16 8 O -0.53 -11.34 15.15 5.56 0.08 -11.26 16 9 C -0.06 -0.85 4.81 -29.04 -0.14 -0.99 16 10 C 0.09 1.33 5.84 -82.98 -0.48 0.85 16 11 C -0.08 -0.97 11.63 -16.43 -0.19 -1.16 16 12 N -0.35 -4.16 2.95 -62.59 -0.18 -4.35 16 13 C 0.02 0.16 10.92 -16.53 -0.18 -0.02 16 14 C 0.08 0.70 7.25 -39.79 -0.29 0.41 16 15 F -0.12 -1.06 17.26 2.25 0.04 -1.02 16 16 C -0.14 -1.21 10.05 -39.49 -0.40 -1.60 16 17 C -0.03 -0.34 10.10 -39.37 -0.40 -0.74 16 18 C 0.20 2.88 7.81 -156.06 -1.22 1.66 16 19 N -0.44 -7.64 10.69 -9.01 -0.10 -7.73 16 20 N -0.72 -17.52 4.39 -53.42 -0.23 -17.75 16 21 C -0.23 -6.24 9.93 -15.06 -0.15 -6.39 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 24 N -0.94 -27.17 13.06 55.49 0.72 -26.44 16 25 Si 0.90 22.60 29.55 -169.99 -5.02 17.57 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.34 7.42 -51.92 -0.39 0.96 16 33 H 0.07 1.10 7.89 -51.93 -0.41 0.69 16 34 H 0.08 1.57 7.39 -51.93 -0.38 1.18 16 35 H 0.06 0.65 6.44 -51.92 -0.33 0.32 16 36 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 37 H 0.11 1.01 7.36 -51.93 -0.38 0.62 16 38 H 0.11 1.59 8.11 -51.93 -0.42 1.17 16 39 H 0.19 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 43 H 0.38 9.48 6.26 -40.82 -0.26 9.22 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -35.50 375.02 -8.42 -43.91 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.91 Total: 7.50 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.97 Total: 4.53 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -0.29 Total: -66.89 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.50 -8.42 -43.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725501807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.929 kcal (2) G-P(sol) polarization free energy of solvation -35.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.25 seconds