Wall clock time and date at job start Tue Mar 31 2020 19:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 N 1.46501 * 109.47349 * 175.00381 * 4 2 1 6 6 C 1.46500 * 119.99382 * 269.99867 * 5 4 2 7 7 C 1.34776 * 120.00288 * 89.99689 * 5 4 2 8 8 O 1.21276 * 119.99952 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99616 * 180.02562 * 7 5 4 10 10 C 1.50696 * 109.46722 * 179.97438 * 9 7 5 11 11 C 1.35137 * 125.69285 * 125.00151 * 10 9 7 12 12 N 1.36815 * 107.18183 * 179.97438 * 11 10 9 13 13 C 1.36611 * 132.53603 * 180.02562 * 12 11 10 14 14 C 1.35127 * 120.56925 * 179.97438 * 13 12 11 15 15 F 1.35105 * 119.87452 * 180.02562 * 14 13 12 16 16 C 1.40612 * 120.25002 * 0.04218 * 14 13 12 17 17 C 1.36011 * 119.68508 * 359.97438 * 16 14 13 18 18 C 1.37024 * 107.01987 * 359.97438 * 12 11 10 19 19 N 1.32611 * 108.02885 * 359.75990 * 18 12 11 20 20 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 31 31 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 32 32 H 1.09009 * 109.46837 * 294.99855 * 4 2 1 33 33 H 1.09000 * 109.47433 * 54.99587 * 4 2 1 34 34 H 1.09000 * 109.47354 * 90.00395 * 6 5 4 35 35 H 1.09009 * 109.46833 * 209.99836 * 6 5 4 36 36 H 1.08999 * 109.47622 * 329.99348 * 6 5 4 37 37 H 1.08994 * 109.47062 * 299.99630 * 9 7 5 38 38 H 1.08993 * 109.47169 * 59.99970 * 9 7 5 39 39 H 1.08000 * 126.40573 * 359.97438 * 11 10 9 40 40 H 1.07997 * 119.71474 * 359.97438 * 13 12 11 41 41 H 1.08005 * 120.15908 * 179.97438 * 16 14 13 42 42 H 1.08005 * 120.31192 * 180.02562 * 17 16 14 43 43 H 0.97000 * 119.99792 * 264.99726 * 20 2 1 44 44 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5612 7 6 4.2676 0.1492 1.7156 8 8 3.7495 1.1143 2.2362 9 6 5.7695 0.0413 1.6547 10 6 6.3868 1.2519 2.3061 11 6 7.2856 1.2321 3.3151 12 7 7.5896 2.5328 3.6110 13 6 8.4268 3.0996 4.5299 14 6 8.5451 4.4429 4.6153 15 9 9.3776 4.9884 5.5289 16 6 7.8047 5.2752 3.7572 17 6 6.9679 4.7219 2.8387 18 6 6.8572 3.3193 2.7610 19 7 6.1423 2.5226 1.9782 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4242 23 6 2.6172 -0.6605 -3.5077 24 7 2.9303 -1.9375 -3.4485 25 14 2.8029 0.2732 -5.1149 26 1 4.1654 0.8587 -5.1927 27 1 2.5981 -0.6569 -6.2543 28 1 1.7929 1.3602 -5.1754 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 4.2798 -1.7932 -0.4994 35 1 5.0864 -2.1898 1.0370 36 1 3.4770 -2.8600 0.6778 37 1 6.0907 -0.8579 2.1802 38 1 6.0880 -0.0128 0.6137 39 1 7.6884 0.3539 3.7976 40 1 8.9989 2.4685 5.1937 41 1 7.9001 6.3488 3.8270 42 1 6.3948 5.3516 2.1743 43 1 2.2490 -1.6318 -1.1526 44 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725501807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:33 Heat of formation + Delta-G solvation = 12.059481 kcal Electronic energy + Delta-G solvation = -28301.647269 eV Core-core repulsion = 24169.974830 eV Total energy + Delta-G solvation = -4131.672439 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 32.04 seconds Orbital eigenvalues (eV) -50.08772 -43.85518 -40.80415 -38.35348 -37.68802 -35.72338 -34.77796 -34.02612 -32.73269 -30.68925 -30.12685 -29.08352 -27.94456 -26.59334 -25.53349 -24.56083 -23.80976 -22.32297 -21.52889 -20.06281 -19.29221 -19.24794 -18.66918 -17.94615 -17.39337 -17.29294 -16.94015 -16.71428 -16.39210 -16.16862 -16.08044 -15.59513 -15.50756 -15.17010 -14.84850 -14.52326 -14.41958 -14.02845 -13.86202 -13.71376 -13.54796 -13.25141 -13.08040 -13.04287 -12.80255 -12.65082 -12.59815 -12.48863 -12.32768 -12.17616 -12.06193 -11.83968 -11.62097 -11.08221 -10.97474 -10.68424 -9.63707 -9.46532 -8.94551 -8.89928 -7.90291 -5.14805 -0.41706 0.10679 1.42335 1.45907 1.47123 1.54608 1.66658 1.78925 2.25817 2.44634 2.58163 2.92253 3.11351 3.35277 3.42828 3.71684 3.76553 3.84600 3.99102 4.00127 4.18178 4.25180 4.39207 4.42277 4.48579 4.56506 4.66161 4.68630 4.74198 4.77409 4.80109 4.82616 4.90031 4.93391 5.06228 5.25779 5.27722 5.39163 5.42739 5.51491 5.54589 5.76968 5.99502 6.32844 6.58278 6.88756 7.36054 7.40690 8.13502 8.44100 9.32009 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.002692 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.496522 B =10400.230179 C =11061.042478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.013 0.987 4 C 0.119 3.881 5 N -0.601 5.601 6 C 0.080 3.920 7 C 0.510 3.490 8 O -0.576 6.576 9 C -0.053 4.053 10 C 0.050 3.950 11 C -0.067 4.067 12 N -0.356 5.356 13 C 0.022 3.978 14 C 0.076 3.924 15 F -0.120 7.120 16 C -0.120 4.120 17 C -0.062 4.062 18 C 0.183 3.817 19 N -0.508 5.508 20 N -0.721 5.721 21 C -0.232 4.232 22 H 0.054 0.946 23 C -0.063 4.063 24 N -0.957 5.957 25 Si 0.958 3.042 26 H -0.292 1.292 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.154 0.846 38 H 0.105 0.895 39 H 0.231 0.769 40 H 0.208 0.792 41 H 0.184 0.816 42 H 0.167 0.833 43 H 0.380 0.620 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.723 4.868 20.351 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.032 0.968 4 C -0.004 4.004 5 N -0.332 5.332 6 C -0.062 4.062 7 C 0.299 3.701 8 O -0.456 6.456 9 C -0.093 4.093 10 C -0.083 4.083 11 C -0.198 4.198 12 N -0.028 5.028 13 C -0.101 4.101 14 C 0.054 3.946 15 F -0.098 7.098 16 C -0.144 4.144 17 C -0.082 4.082 18 C -0.060 4.060 19 N -0.227 5.227 20 N -0.363 5.363 21 C -0.364 4.364 22 H 0.072 0.928 23 C -0.256 4.256 24 N -0.607 5.607 25 Si 0.788 3.212 26 H -0.220 1.220 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.172 0.828 38 H 0.123 0.877 39 H 0.248 0.752 40 H 0.224 0.776 41 H 0.201 0.799 42 H 0.184 0.816 43 H 0.214 0.786 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.956 5.695 19.931 24.445 hybrid contribution 0.463 0.118 -0.781 0.915 sum 13.419 5.813 19.151 24.096 Atomic orbital electron populations 1.22209 0.97002 1.01522 1.00475 1.20754 0.93168 0.94527 0.87260 0.96839 1.21701 0.79871 1.01669 0.97190 1.47717 1.06382 1.22009 1.57098 1.21967 0.99602 0.86809 0.97858 1.20849 0.90266 0.81565 0.77417 1.90658 1.75867 1.32126 1.46933 1.20110 0.89925 0.95877 1.03423 1.20518 0.98016 0.92338 0.97385 1.22935 1.06634 0.85927 1.04321 1.42615 1.28224 1.08026 1.23958 1.21694 0.97583 0.94653 0.96194 1.16670 0.95128 0.90295 0.92526 1.91570 1.68932 1.85447 1.63874 1.21358 0.95811 1.02831 0.94401 1.20386 0.99301 0.88676 0.99835 1.21438 0.96572 0.94733 0.93294 1.70641 1.23247 1.02524 1.26327 1.42387 1.78355 1.10217 1.05313 1.19381 1.34809 0.93461 0.88796 0.92774 1.25245 1.03110 0.96899 1.00347 1.69737 1.52460 1.09348 1.29193 0.85374 0.77484 0.77606 0.80703 1.21957 1.21712 1.20594 0.92367 0.91724 0.94752 0.90223 0.88718 0.94055 0.88000 0.90072 0.82837 0.87655 0.75224 0.77563 0.79856 0.81551 0.78621 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 9.49 71.98 0.68 -4.99 16 2 C 0.15 6.51 3.20 44.99 0.14 6.66 16 3 H 0.01 0.67 8.08 -2.39 -0.02 0.66 16 4 C 0.12 4.14 5.07 86.38 0.44 4.58 16 5 N -0.60 -20.19 2.73 -846.73 -2.31 -22.50 16 6 C 0.08 2.28 9.02 127.77 1.15 3.43 16 7 C 0.51 18.27 7.66 87.66 0.67 18.94 16 8 O -0.58 -25.48 15.15 -3.02 -0.05 -25.53 16 9 C -0.05 -1.43 4.81 29.10 0.14 -1.29 16 10 C 0.05 1.49 5.84 41.59 0.24 1.73 16 11 C -0.07 -1.41 11.63 83.20 0.97 -0.44 16 12 N -0.36 -7.86 2.95 -351.93 -1.04 -8.90 16 13 C 0.02 0.32 10.92 83.23 0.91 1.23 16 14 C 0.08 1.13 7.25 22.13 0.16 1.29 16 15 F -0.12 -1.67 17.26 44.97 0.78 -0.89 16 16 C -0.12 -1.80 10.05 22.33 0.22 -1.57 16 17 C -0.06 -1.33 10.10 22.41 0.23 -1.10 16 18 C 0.18 5.26 7.81 134.10 1.05 6.31 16 19 N -0.51 -18.41 10.69 -182.43 -1.95 -20.36 16 20 N -0.72 -35.92 4.39 -322.93 -1.42 -37.34 16 21 C -0.23 -13.21 9.93 84.04 0.83 -12.37 16 22 H 0.05 3.16 7.83 -2.91 -0.02 3.14 16 23 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 24 N -0.96 -56.04 13.06 21.65 0.28 -55.76 16 25 Si 0.96 47.17 29.55 68.60 2.03 49.20 16 26 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 2.74 7.42 -2.38 -0.02 2.73 16 33 H 0.09 2.81 7.89 -2.39 -0.02 2.79 16 34 H 0.04 1.56 7.39 -2.39 -0.02 1.54 16 35 H 0.10 1.98 6.44 -2.38 -0.02 1.96 16 36 H 0.08 2.07 7.89 -2.39 -0.02 2.05 16 37 H 0.15 2.44 7.36 -2.39 -0.02 2.42 16 38 H 0.11 2.97 8.11 -2.39 -0.02 2.96 16 39 H 0.23 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.21 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 43 H 0.38 19.14 6.26 -92.71 -0.58 18.56 16 44 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -81.64 375.02 5.08 -76.56 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.45 Total: 26.27 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 8.31 Total: 19.25 kcal Atomic # 7 Polarization: -138.42 SS G_CDS: -6.43 Total: -144.86 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.05 Total: -25.53 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.78 Total: -0.89 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -81.64 5.08 -76.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725501807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.617 kcal (2) G-P(sol) polarization free energy of solvation -81.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 32.04 seconds