Wall clock time and date at job start Tue Mar 31 2020 21:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00073 * 2 1 4 4 H 1.48505 * 109.47294 * 269.99888 * 3 2 1 5 5 H 1.48502 * 109.47222 * 29.99247 * 3 2 1 6 6 H 1.48497 * 109.47293 * 149.99717 * 3 2 1 7 7 C 1.38813 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99600 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00001 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47268 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.01866 * 54.93703 * 11 10 9 13 13 C 1.54266 * 110.03167 * 293.54787 * 11 10 9 14 14 C 1.54894 * 104.31305 * 217.03446 * 13 11 10 15 15 C 1.55238 * 102.58338 * 37.93170 * 14 13 11 16 16 H 1.09006 * 110.46947 * 80.77225 * 15 14 13 17 17 N 1.46504 * 110.58101 * 203.33396 * 15 14 13 18 18 C 1.34774 * 120.00191 * 269.87786 * 17 15 14 19 19 O 1.21284 * 120.00186 * 359.97438 * 18 17 15 20 20 C 1.50698 * 119.99704 * 179.97438 * 18 17 15 21 21 C 1.52998 * 112.85355 * 50.33489 * 20 18 17 22 22 F 1.39897 * 109.47235 * 69.66207 * 21 20 18 23 23 F 1.39893 * 109.47258 * 189.66881 * 21 20 18 24 24 F 1.39909 * 109.46668 * 309.66353 * 21 20 18 25 25 C 1.53783 * 113.61638 * 279.13279 * 20 18 17 26 26 C 1.54049 * 86.98650 * 270.84362 * 25 20 18 27 27 C 1.53781 * 87.07691 * 334.56722 * 26 25 20 28 28 C 1.53869 * 110.03661 * 176.37690 * 11 10 9 29 29 H 0.96992 * 119.99692 * 0.02562 * 1 2 3 30 30 H 0.97007 * 120.00233 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47672 * 60.00123 * 10 9 7 32 32 H 1.08999 * 109.47182 * 299.99770 * 10 9 7 33 33 H 1.09002 * 110.48629 * 335.78200 * 13 11 10 34 34 H 1.08998 * 110.48744 * 98.29103 * 13 11 10 35 35 H 1.08996 * 110.75388 * 156.31523 * 14 13 11 36 36 H 1.08993 * 110.76071 * 279.69749 * 14 13 11 37 37 H 0.97000 * 119.99708 * 89.87424 * 17 15 14 38 38 H 1.09000 * 113.61055 * 25.43627 * 25 20 18 39 39 H 1.08997 * 113.61899 * 156.33268 * 25 20 18 40 40 H 1.09006 * 113.61551 * 220.01851 * 26 25 20 41 41 H 1.09002 * 113.61695 * 89.11366 * 26 25 20 42 42 H 1.09004 * 113.60846 * 270.88359 * 27 26 25 43 43 H 1.08999 * 113.69094 * 139.99559 * 27 26 25 44 44 H 1.08999 * 110.04012 * 238.57046 * 28 11 10 45 45 H 1.09006 * 110.02998 * 359.95797 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3739 -4.7212 -0.8369 13 6 0.2809 -4.8448 1.3301 14 6 0.1096 -6.3517 1.6453 15 6 1.4668 -6.9495 1.1865 16 1 2.2285 -6.7972 1.9513 17 7 1.3250 -8.3757 0.8828 18 6 1.5213 -9.2935 1.8501 19 8 1.8158 -8.9388 2.9719 20 6 1.3748 -10.7604 1.5377 21 6 2.1676 -11.1866 0.3004 22 9 3.5366 -11.1357 0.5835 23 9 1.8128 -12.4926 -0.0538 24 9 1.8780 -10.3209 -0.7598 25 6 -0.0842 -11.2464 1.5319 26 6 0.0895 -11.5294 3.0362 27 6 1.5944 -11.6743 2.7548 28 6 1.8179 -6.1579 -0.0902 29 1 -0.4849 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6848 -3.7146 0.8905 32 1 2.6847 -3.7145 -0.8895 33 1 0.8510 -4.3526 2.1181 34 1 -0.6915 -4.3675 1.2091 35 1 -0.0430 -6.5080 2.7131 36 1 -0.7135 -6.7755 1.0701 37 1 1.0897 -8.6594 -0.0144 38 1 -0.8059 -10.4588 1.3149 39 1 -0.2433 -12.1439 0.9342 40 1 -0.3846 -12.4547 3.3640 41 1 -0.1560 -10.6786 3.6718 42 1 1.8934 -12.6887 2.4909 43 1 2.2282 -11.2327 3.5238 44 1 1.4938 -6.7097 -0.9725 45 1 2.8921 -5.9788 -0.1357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725617966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:32 Heat of formation + Delta-G solvation = -167.762200 kcal Electronic energy + Delta-G solvation = -29877.450158 eV Core-core repulsion = 25287.290880 eV Total energy + Delta-G solvation = -4590.159278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 15.67 seconds Orbital eigenvalues (eV) -50.63565 -48.17389 -48.05273 -41.04934 -38.84547 -37.41916 -34.91663 -33.50650 -31.12235 -29.49314 -28.81309 -27.58556 -26.37414 -24.70456 -24.02647 -22.34442 -22.17140 -20.63673 -20.04353 -19.38088 -18.92942 -18.85511 -18.65365 -17.00523 -16.70579 -16.60292 -15.53750 -15.19058 -15.00655 -14.97246 -14.86072 -14.55468 -14.44347 -14.31126 -14.21311 -14.15079 -13.83549 -13.41686 -13.26274 -13.22267 -12.97506 -12.81224 -12.76177 -12.17618 -11.76825 -11.55073 -11.45945 -11.20859 -11.13207 -11.06967 -10.84360 -10.72652 -10.65113 -10.33053 -10.22903 -10.15981 -9.90414 -9.65447 -9.22042 -8.84179 -6.88650 -5.74247 -3.02250 1.82939 2.38363 2.62017 3.14662 3.34418 3.45190 3.49999 3.50453 3.52084 3.91428 4.08314 4.14443 4.22853 4.59649 4.65320 4.75309 4.79595 5.00197 5.03318 5.08229 5.28084 5.38431 5.47277 5.49521 5.54095 5.55727 5.61028 5.64034 5.75553 5.85503 5.88631 6.06197 6.14108 6.26878 6.27597 6.42394 6.54692 6.64429 6.82505 6.95216 7.16425 7.72450 7.80878 8.45206 9.56270 10.15095 10.49902 11.48851 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.027085 B = 0.002262 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.536233 B =12373.605736 C =12761.013757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.111 4.111 14 C -0.132 4.132 15 C 0.137 3.863 16 H 0.098 0.902 17 N -0.713 5.713 18 C 0.541 3.459 19 O -0.514 6.514 20 C -0.171 4.171 21 C 0.470 3.530 22 F -0.173 7.173 23 F -0.174 7.174 24 F -0.178 7.178 25 C -0.116 4.116 26 C -0.132 4.132 27 C -0.108 4.108 28 C -0.121 4.121 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.020 0.980 32 H 0.017 0.983 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.403 0.597 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 -29.697 2.215 29.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.171 4.171 15 C 0.033 3.967 16 H 0.116 0.884 17 N -0.367 5.367 18 C 0.323 3.677 19 O -0.389 6.389 20 C -0.176 4.176 21 C 0.415 3.585 22 F -0.155 7.155 23 F -0.155 7.155 24 F -0.159 7.159 25 C -0.154 4.154 26 C -0.169 4.169 27 C -0.145 4.145 28 C -0.160 4.160 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.241 0.759 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.085 0.915 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.049 -29.303 2.986 29.455 hybrid contribution 0.261 0.782 -0.907 1.226 sum 0.212 -28.521 2.079 28.597 Atomic orbital electron populations 1.69660 1.05093 1.25580 1.58017 1.24734 0.95529 0.97665 1.03188 0.86191 0.78660 0.83880 0.77485 1.21774 1.21791 1.20786 1.19241 0.91031 0.84256 1.42352 0.91259 1.42351 1.05881 0.99959 1.89415 1.20793 0.93043 0.85358 0.97678 1.21883 0.97625 0.93676 0.98294 0.90703 1.22314 1.00984 0.94108 0.97447 1.22946 0.96268 0.96704 1.01164 1.22132 0.98688 0.77438 0.98414 0.88417 1.46373 1.70049 1.06966 1.13293 1.19093 0.77638 0.85248 0.85677 1.90744 1.46379 1.80560 1.21171 1.23698 1.01055 0.97365 0.95434 1.20051 0.78695 0.75121 0.84600 1.93231 1.32732 1.96068 1.93426 1.93176 1.91658 1.37812 1.92854 1.93085 1.93162 1.69542 1.60156 1.23096 0.90461 1.02623 0.99212 1.22856 0.95281 1.03520 0.95281 1.22891 0.99204 0.98044 0.94397 1.22405 1.01558 0.95952 0.96085 0.93569 0.78255 0.96238 0.96519 0.90766 0.91126 0.91359 0.91507 0.75865 0.89313 0.87487 0.89762 0.88764 0.88264 0.88242 0.91472 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.59 5.43 -59.91 -0.33 -18.92 16 10 C 0.16 3.18 5.31 -4.04 -0.02 3.16 16 11 C -0.10 -1.49 2.98 -89.50 -0.27 -1.76 16 12 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.11 -1.68 6.00 -25.07 -0.15 -1.83 16 14 C -0.13 -1.65 6.61 -24.55 -0.16 -1.81 16 15 C 0.14 1.67 3.22 -66.08 -0.21 1.46 16 16 H 0.10 1.35 7.55 -51.93 -0.39 0.96 16 17 N -0.71 -7.45 4.87 -52.01 -0.25 -7.70 16 18 C 0.54 5.99 6.61 -10.99 -0.07 5.92 16 19 O -0.51 -7.32 15.48 5.55 0.09 -7.23 16 20 C -0.17 -1.40 0.86 -154.85 -0.13 -1.53 16 21 C 0.47 4.03 2.64 37.16 0.10 4.13 16 22 F -0.17 -1.76 17.18 2.25 0.04 -1.72 16 23 F -0.17 -1.36 15.74 2.25 0.04 -1.32 16 24 F -0.18 -1.55 14.55 2.25 0.03 -1.52 16 25 C -0.12 -0.68 7.12 -25.78 -0.18 -0.87 16 26 C -0.13 -0.79 7.76 -25.78 -0.20 -0.99 16 27 C -0.11 -0.76 6.83 -25.92 -0.18 -0.94 16 28 C -0.12 -1.51 6.19 -25.62 -0.16 -1.67 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.38 10.17 7.51 -40.82 -0.31 9.87 16 31 H 0.02 0.40 8.04 -51.93 -0.42 -0.01 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 1.26 7.78 -51.93 -0.40 0.85 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 3.56 5.96 -40.82 -0.24 3.32 16 38 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 39 H 0.11 0.48 7.18 -51.93 -0.37 0.11 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.54 7.83 -51.93 -0.41 0.13 16 43 H 0.10 0.84 7.42 -51.93 -0.39 0.46 16 44 H 0.07 0.73 7.73 -51.93 -0.40 0.32 16 45 H 0.07 0.95 7.67 -51.93 -0.40 0.55 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -31.94 370.69 -7.64 -39.58 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.65 Total: 7.50 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.89 Total: -4.16 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.15 Total: -54.34 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.09 Total: -7.23 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.11 Total: -4.56 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.94 -7.64 -39.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725617966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.180 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.67 seconds