Wall clock time and date at job start Tue Mar 31 2020 21:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00073 * 2 1 4 4 H 1.48505 * 109.47294 * 269.99888 * 3 2 1 5 5 H 1.48502 * 109.47222 * 29.99247 * 3 2 1 6 6 H 1.48497 * 109.47293 * 149.99717 * 3 2 1 7 7 C 1.38813 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99600 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00001 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47268 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.01866 * 54.93703 * 11 10 9 13 13 C 1.54266 * 110.03167 * 293.54787 * 11 10 9 14 14 C 1.54894 * 104.31305 * 217.03446 * 13 11 10 15 15 C 1.55238 * 102.58338 * 37.93170 * 14 13 11 16 16 H 1.09006 * 110.46947 * 80.77225 * 15 14 13 17 17 N 1.46504 * 110.58101 * 203.33396 * 15 14 13 18 18 C 1.34774 * 120.00191 * 269.87786 * 17 15 14 19 19 O 1.21284 * 120.00186 * 359.97438 * 18 17 15 20 20 C 1.50698 * 119.99704 * 179.97438 * 18 17 15 21 21 C 1.52998 * 112.85355 * 50.33489 * 20 18 17 22 22 F 1.39897 * 109.47235 * 69.66207 * 21 20 18 23 23 F 1.39893 * 109.47258 * 189.66881 * 21 20 18 24 24 F 1.39909 * 109.46668 * 309.66353 * 21 20 18 25 25 C 1.53783 * 113.61638 * 279.13279 * 20 18 17 26 26 C 1.54049 * 86.98650 * 270.84362 * 25 20 18 27 27 C 1.53781 * 87.07691 * 334.56722 * 26 25 20 28 28 C 1.53869 * 110.03661 * 176.37690 * 11 10 9 29 29 H 0.96992 * 119.99692 * 0.02562 * 1 2 3 30 30 H 0.97007 * 120.00233 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47672 * 60.00123 * 10 9 7 32 32 H 1.08999 * 109.47182 * 299.99770 * 10 9 7 33 33 H 1.09002 * 110.48629 * 335.78200 * 13 11 10 34 34 H 1.08998 * 110.48744 * 98.29103 * 13 11 10 35 35 H 1.08996 * 110.75388 * 156.31523 * 14 13 11 36 36 H 1.08993 * 110.76071 * 279.69749 * 14 13 11 37 37 H 0.97000 * 119.99708 * 89.87424 * 17 15 14 38 38 H 1.09000 * 113.61055 * 25.43627 * 25 20 18 39 39 H 1.08997 * 113.61899 * 156.33268 * 25 20 18 40 40 H 1.09006 * 113.61551 * 220.01851 * 26 25 20 41 41 H 1.09002 * 113.61695 * 89.11366 * 26 25 20 42 42 H 1.09004 * 113.60846 * 270.88359 * 27 26 25 43 43 H 1.08999 * 113.69094 * 139.99559 * 27 26 25 44 44 H 1.08999 * 110.04012 * 238.57046 * 28 11 10 45 45 H 1.09006 * 110.02998 * 359.95797 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3739 -4.7212 -0.8369 13 6 0.2809 -4.8448 1.3301 14 6 0.1096 -6.3517 1.6453 15 6 1.4668 -6.9495 1.1865 16 1 2.2285 -6.7972 1.9513 17 7 1.3250 -8.3757 0.8828 18 6 1.5213 -9.2935 1.8501 19 8 1.8158 -8.9388 2.9719 20 6 1.3748 -10.7604 1.5377 21 6 2.1676 -11.1866 0.3004 22 9 3.5366 -11.1357 0.5835 23 9 1.8128 -12.4926 -0.0538 24 9 1.8780 -10.3209 -0.7598 25 6 -0.0842 -11.2464 1.5319 26 6 0.0895 -11.5294 3.0362 27 6 1.5944 -11.6743 2.7548 28 6 1.8179 -6.1579 -0.0902 29 1 -0.4849 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6848 -3.7146 0.8905 32 1 2.6847 -3.7145 -0.8895 33 1 0.8510 -4.3526 2.1181 34 1 -0.6915 -4.3675 1.2091 35 1 -0.0430 -6.5080 2.7131 36 1 -0.7135 -6.7755 1.0701 37 1 1.0897 -8.6594 -0.0144 38 1 -0.8059 -10.4588 1.3149 39 1 -0.2433 -12.1439 0.9342 40 1 -0.3846 -12.4547 3.3640 41 1 -0.1560 -10.6786 3.6718 42 1 1.8934 -12.6887 2.4909 43 1 2.2282 -11.2327 3.5238 44 1 1.4938 -6.7097 -0.9725 45 1 2.8921 -5.9788 -0.1357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725617966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:19 Heat of formation + Delta-G solvation = -187.113274 kcal Electronic energy + Delta-G solvation = -29878.289284 eV Core-core repulsion = 25287.290880 eV Total energy + Delta-G solvation = -4590.998404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 13.08 seconds Orbital eigenvalues (eV) -51.30683 -48.82804 -48.75091 -41.83426 -39.86201 -38.34098 -36.48127 -34.93857 -32.96467 -30.36205 -30.09946 -28.74880 -26.89300 -26.28925 -24.94761 -23.94535 -23.08662 -21.66314 -21.01448 -20.47639 -19.63875 -19.53341 -19.33324 -19.05936 -17.61941 -17.37883 -16.74259 -16.32599 -16.09730 -15.89916 -15.70852 -15.55496 -15.27673 -15.21260 -15.14011 -15.07421 -14.90404 -14.78374 -14.65559 -14.31529 -13.98120 -13.64191 -13.42483 -13.36859 -13.25018 -12.88013 -12.79948 -12.50355 -12.16085 -12.13369 -12.07720 -11.82134 -11.75278 -11.72980 -11.66017 -11.59250 -11.37428 -11.08182 -10.91670 -10.19303 -8.98863 -7.95478 -5.23643 1.05085 1.46609 1.48274 1.56797 1.65387 1.80872 2.50973 2.55812 2.68264 2.85559 3.30298 3.37803 3.43685 3.48588 3.56205 3.64533 3.67493 3.86177 4.13475 4.23073 4.37178 4.46189 4.48094 4.56258 4.59509 4.63382 4.64822 4.73750 4.79733 4.87005 4.90505 5.00651 5.02542 5.04170 5.11620 5.22603 5.28019 5.37792 5.45009 5.47900 5.54224 6.27505 6.31000 6.96472 7.33795 8.10740 8.34488 9.28191 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.027085 B = 0.002262 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.536233 B =12373.605736 C =12761.013757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.744 5.744 10 C 0.157 3.843 11 C -0.087 4.087 12 H 0.075 0.925 13 C -0.109 4.109 14 C -0.119 4.119 15 C 0.143 3.857 16 H 0.079 0.921 17 N -0.705 5.705 18 C 0.539 3.461 19 O -0.550 6.550 20 C -0.173 4.173 21 C 0.472 3.528 22 F -0.185 7.185 23 F -0.166 7.166 24 F -0.178 7.178 25 C -0.106 4.106 26 C -0.129 4.129 27 C -0.109 4.109 28 C -0.111 4.111 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.015 0.985 32 H 0.020 0.980 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.413 0.587 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -31.637 1.414 31.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.386 5.386 10 C 0.030 3.970 11 C -0.106 4.106 12 H 0.093 0.907 13 C -0.147 4.147 14 C -0.157 4.157 15 C 0.039 3.961 16 H 0.097 0.903 17 N -0.359 5.359 18 C 0.323 3.677 19 O -0.428 6.428 20 C -0.178 4.178 21 C 0.417 3.583 22 F -0.167 7.167 23 F -0.147 7.147 24 F -0.160 7.160 25 C -0.143 4.143 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.149 4.149 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.254 0.746 38 H 0.111 0.889 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.050 -31.285 2.161 31.359 hybrid contribution 0.312 1.338 -0.648 1.518 sum 0.261 -29.947 1.513 29.987 Atomic orbital electron populations 1.69811 1.06540 1.26074 1.59558 1.25558 0.96436 1.01055 1.03753 0.85146 0.77662 0.79510 0.77486 1.21273 1.22084 1.19632 1.19637 0.91449 0.85561 1.41163 0.90933 1.42552 1.05694 1.01102 1.89292 1.20967 0.93818 0.84936 0.97257 1.21769 0.96857 0.93591 0.98385 0.90661 1.22221 0.99950 0.95938 0.96621 1.22832 0.97125 0.94519 1.01254 1.21876 0.97899 0.78597 0.97760 0.90292 1.46257 1.69721 1.06099 1.13805 1.19549 0.76584 0.86498 0.85066 1.90733 1.47923 1.81422 1.22690 1.23708 1.02957 0.95335 0.95804 1.20067 0.78144 0.75424 0.84639 1.93212 1.33777 1.96150 1.93524 1.93191 1.91514 1.37222 1.92777 1.93079 1.93091 1.69614 1.60201 1.23186 0.88513 1.03435 0.99216 1.22821 0.94533 1.03938 0.95294 1.22977 0.99751 0.98563 0.93357 1.22302 1.01148 0.94264 0.97220 0.93973 0.79271 0.96682 0.96253 0.93089 0.92138 0.91795 0.89580 0.74618 0.88883 0.85382 0.87430 0.90577 0.86269 0.90192 0.88865 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.25 -14.04 9.99 84.04 0.84 -13.20 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -38.31 5.43 -343.46 -1.87 -40.18 16 10 C 0.16 6.29 5.31 86.38 0.46 6.75 16 11 C -0.09 -2.66 2.98 -10.07 -0.03 -2.69 16 12 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 13 C -0.11 -3.35 6.00 31.67 0.19 -3.16 16 14 C -0.12 -2.86 6.61 32.01 0.21 -2.65 16 15 C 0.14 3.35 3.22 46.19 0.15 3.50 16 16 H 0.08 2.19 7.55 -2.38 -0.02 2.18 16 17 N -0.70 -13.57 4.87 -436.87 -2.13 -15.70 16 18 C 0.54 11.41 6.61 87.66 0.58 11.99 16 19 O -0.55 -15.74 15.48 -3.04 -0.05 -15.79 16 20 C -0.17 -2.53 0.86 -52.40 -0.04 -2.57 16 21 C 0.47 7.12 2.64 71.98 0.19 7.31 16 22 F -0.19 -3.53 17.18 44.97 0.77 -2.76 16 23 F -0.17 -2.13 15.74 44.97 0.71 -1.43 16 24 F -0.18 -2.68 14.55 44.97 0.65 -2.03 16 25 C -0.11 -0.95 7.12 31.21 0.22 -0.73 16 26 C -0.13 -1.29 7.76 31.21 0.24 -1.05 16 27 C -0.11 -1.37 6.83 31.12 0.21 -1.16 16 28 C -0.11 -2.58 6.19 31.32 0.19 -2.39 16 29 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.38 20.35 7.51 -92.70 -0.70 19.65 16 31 H 0.02 0.63 8.04 -2.39 -0.02 0.61 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 1.79 7.78 -2.39 -0.02 1.77 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.41 6.26 5.96 -92.71 -0.55 5.71 16 38 H 0.09 0.79 8.09 -2.39 -0.02 0.77 16 39 H 0.13 0.66 7.18 -2.39 -0.02 0.64 16 40 H 0.11 0.58 8.14 -2.38 -0.02 0.57 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 42 H 0.12 1.01 7.83 -2.39 -0.02 0.99 16 43 H 0.08 1.35 7.42 -2.39 -0.02 1.33 16 44 H 0.09 1.73 7.73 -2.39 -0.02 1.71 16 45 H 0.08 1.80 7.67 -2.38 -0.02 1.78 16 Total: -1.00 -69.28 370.69 4.06 -65.22 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.22 Total: 27.42 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 3.88 Total: -4.00 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -3.71 Total: -115.44 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.05 Total: -15.79 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 2.13 Total: -6.21 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -69.28 4.06 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725617966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.895 kcal (2) G-P(sol) polarization free energy of solvation -69.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.08 seconds