Wall clock time and date at job start Tue Mar 31 2020 21:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.01108 * 305.69465 * 11 10 9 13 13 C 1.53873 * 110.03537 * 67.09058 * 11 10 9 14 14 C 1.54263 * 106.59601 * 119.28547 * 13 11 10 15 15 C 1.54891 * 104.19869 * 23.60807 * 14 13 11 16 16 H 1.09000 * 110.75609 * 80.37015 * 15 14 13 17 17 N 1.46502 * 110.75585 * 203.55851 * 15 14 13 18 18 C 1.34778 * 119.99783 * 273.54558 * 17 15 14 19 19 O 1.21280 * 120.00212 * 0.02562 * 18 17 15 20 20 C 1.50696 * 119.99683 * 180.02562 * 18 17 15 21 21 C 1.53002 * 112.85120 * 50.33320 * 20 18 17 22 22 F 1.39901 * 109.46927 * 69.66587 * 21 20 18 23 23 F 1.39901 * 109.47148 * 189.66259 * 21 20 18 24 24 F 1.39900 * 109.47104 * 309.66710 * 21 20 18 25 25 C 1.53780 * 113.61622 * 279.13482 * 20 18 17 26 26 C 1.54044 * 86.98582 * 270.83990 * 25 20 18 27 27 C 1.53783 * 113.61632 * 181.52627 * 20 18 17 28 28 C 1.54269 * 110.02771 * 184.31259 * 11 10 9 29 29 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 31 31 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 32 32 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 33 33 H 1.08997 * 110.03038 * 238.56897 * 13 11 10 34 34 H 1.08998 * 110.02918 * 0.02562 * 13 11 10 35 35 H 1.09004 * 110.48384 * 142.29070 * 14 13 11 36 36 H 1.09001 * 110.48669 * 264.92896 * 14 13 11 37 37 H 0.96999 * 120.00196 * 93.54961 * 17 15 14 38 38 H 1.08996 * 113.61395 * 25.43492 * 25 20 18 39 39 H 1.08998 * 113.61325 * 156.33358 * 25 20 18 40 40 H 1.09007 * 113.61740 * 220.01583 * 26 25 20 41 41 H 1.08999 * 113.61099 * 89.11776 * 26 25 20 42 42 H 1.08993 * 113.62025 * 203.66258 * 27 20 18 43 43 H 1.09003 * 113.61581 * 334.49277 * 27 20 18 44 44 H 1.09004 * 110.48443 * 335.77499 * 28 11 10 45 45 H 1.09000 * 110.48808 * 98.42722 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3667 -4.7193 0.8119 13 6 0.2938 -4.8473 -1.3522 14 6 0.6079 -6.2046 -2.0146 15 6 1.0140 -7.1193 -0.8324 16 1 0.1318 -7.4960 -0.3147 17 7 1.8531 -8.2267 -1.2972 18 6 1.2823 -9.3593 -1.7531 19 8 0.0742 -9.4617 -1.7790 20 6 2.1455 -10.4986 -2.2306 21 6 3.2367 -10.8782 -1.2276 22 9 2.6515 -11.4730 -0.1047 23 9 4.1247 -11.7801 -1.8236 24 9 3.9317 -9.7284 -0.8372 25 6 2.6647 -10.3181 -3.6668 26 6 1.3789 -11.0262 -4.1339 27 6 1.3434 -11.7022 -2.7530 28 6 1.8187 -6.1611 0.0817 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0068 31 1 2.6846 -3.7098 -0.9038 32 1 2.6846 -3.7192 0.8761 33 1 -0.7768 -4.7613 -1.1665 34 1 0.6289 -4.0326 -1.9940 35 1 -0.2765 -6.5984 -2.5154 36 1 1.4332 -6.1032 -2.7194 37 1 2.8194 -8.1447 -1.2767 38 1 2.7294 -9.2761 -3.9800 39 1 3.5741 -10.8813 -3.8763 40 1 1.5384 -11.7228 -4.9571 41 1 0.5450 -10.3464 -4.3089 42 1 1.8922 -12.6431 -2.7133 43 1 0.3425 -11.7776 -2.3280 44 1 2.8398 -6.0528 -0.2842 45 1 1.8171 -6.5226 1.1100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725617973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:04 Heat of formation + Delta-G solvation = -168.016949 kcal Electronic energy + Delta-G solvation = -29896.299002 eV Core-core repulsion = 25306.128677 eV Total energy + Delta-G solvation = -4590.170325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 19.11 seconds Orbital eigenvalues (eV) -50.62980 -48.16590 -48.04985 -41.04565 -38.84029 -37.42405 -34.92402 -33.51992 -31.13317 -29.48576 -28.78435 -27.61018 -26.36894 -24.70756 -24.02460 -22.35702 -22.21468 -20.75949 -19.96299 -19.22395 -18.87380 -18.84420 -18.61461 -17.07851 -16.69929 -16.41454 -15.66323 -15.50610 -15.08727 -14.91080 -14.78295 -14.57618 -14.48751 -14.43922 -14.23031 -14.12506 -13.57065 -13.43884 -13.24603 -13.11850 -12.98039 -12.84679 -12.74451 -12.06708 -11.85468 -11.55713 -11.48247 -11.20346 -11.12646 -11.10885 -10.84978 -10.80466 -10.54632 -10.37958 -10.25359 -10.11403 -9.89150 -9.65474 -9.23600 -8.85046 -6.89970 -5.74883 -3.03271 1.83120 2.38491 2.61580 3.15335 3.34667 3.44689 3.48903 3.50076 3.50713 3.91928 4.08921 4.15118 4.22563 4.57976 4.64926 4.75835 4.82559 5.00924 5.01515 5.09805 5.29222 5.39153 5.45912 5.49380 5.55192 5.58614 5.59505 5.66901 5.76092 5.82060 5.89421 6.07289 6.13347 6.27080 6.30319 6.39607 6.53421 6.67189 6.83368 6.94493 7.16573 7.70546 7.80436 8.44332 9.55298 10.14214 10.48984 11.48002 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.002303 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.110728 B =12157.563827 C =12542.338234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.115 4.115 14 C -0.130 4.130 15 C 0.137 3.863 16 H 0.096 0.904 17 N -0.713 5.713 18 C 0.541 3.459 19 O -0.514 6.514 20 C -0.171 4.171 21 C 0.470 3.530 22 F -0.174 7.174 23 F -0.174 7.174 24 F -0.177 7.177 25 C -0.117 4.117 26 C -0.132 4.132 27 C -0.108 4.108 28 C -0.120 4.120 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.019 0.981 32 H 0.017 0.983 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.404 0.596 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 -27.639 -6.968 29.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.033 3.967 11 C -0.115 4.115 12 H 0.094 0.906 13 C -0.153 4.153 14 C -0.169 4.169 15 C 0.033 3.967 16 H 0.114 0.886 17 N -0.366 5.366 18 C 0.324 3.676 19 O -0.389 6.389 20 C -0.175 4.175 21 C 0.415 3.585 22 F -0.155 7.155 23 F -0.155 7.155 24 F -0.159 7.159 25 C -0.154 4.154 26 C -0.169 4.169 27 C -0.145 4.145 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.242 0.758 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.092 0.908 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.093 -27.569 -6.941 28.882 hybrid contribution 0.974 0.990 0.348 1.432 sum 6.068 -26.578 -6.593 28.048 Atomic orbital electron populations 1.69650 1.05097 1.25729 1.57774 1.24738 0.95518 0.97664 1.03110 0.86269 0.78516 0.83597 0.77820 1.21311 1.21695 1.21302 1.19187 0.90975 0.84257 1.42674 0.91324 1.42361 1.05908 0.99938 1.89425 1.20734 0.93017 0.85351 0.97591 1.21874 0.97757 0.93700 0.98134 0.90634 1.22127 1.00233 0.96415 0.96509 1.22729 1.01348 0.95560 0.97278 1.22189 0.93995 0.85071 0.95446 0.88604 1.46287 1.11311 1.15078 1.63921 1.19083 0.88053 0.82457 0.77991 1.90737 1.13443 1.81114 1.53641 1.23696 0.96516 1.01047 0.96291 1.20052 0.82352 0.74882 0.81189 1.93229 1.83821 1.84196 1.54262 1.93179 1.70452 1.68456 1.83399 1.93087 1.81110 1.49773 1.91918 1.23099 0.99962 1.03714 0.88646 1.22855 0.97385 0.99881 0.96819 1.22888 1.01470 0.94018 0.96135 1.22622 0.99381 0.94659 0.99224 0.93479 0.78202 0.96358 0.96529 0.91816 0.90204 0.91514 0.91544 0.75775 0.89266 0.87466 0.89758 0.88772 0.88265 0.88270 0.90816 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.50 5.36 -59.90 -0.32 -18.82 16 10 C 0.16 3.18 5.28 -4.04 -0.02 3.16 16 11 C -0.10 -1.50 2.97 -89.50 -0.27 -1.76 16 12 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.11 -1.76 6.16 -25.62 -0.16 -1.92 16 14 C -0.13 -1.68 6.51 -25.07 -0.16 -1.84 16 15 C 0.14 1.65 3.18 -65.89 -0.21 1.44 16 16 H 0.10 1.26 7.70 -51.93 -0.40 0.86 16 17 N -0.71 -7.49 4.92 -51.84 -0.25 -7.75 16 18 C 0.54 5.98 6.61 -10.99 -0.07 5.91 16 19 O -0.51 -7.23 15.56 5.56 0.09 -7.15 16 20 C -0.17 -1.41 0.86 -154.85 -0.13 -1.54 16 21 C 0.47 4.05 2.64 37.16 0.10 4.15 16 22 F -0.17 -1.75 17.18 2.25 0.04 -1.71 16 23 F -0.17 -1.37 15.74 2.25 0.04 -1.34 16 24 F -0.18 -1.57 14.55 2.25 0.03 -1.53 16 25 C -0.12 -0.71 7.12 -25.78 -0.18 -0.89 16 26 C -0.13 -0.81 7.76 -25.78 -0.20 -1.01 16 27 C -0.11 -0.76 6.83 -25.92 -0.18 -0.94 16 28 C -0.12 -1.49 5.98 -25.03 -0.15 -1.64 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.38 10.20 7.53 -40.82 -0.31 9.89 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.41 7.60 -51.93 -0.39 1.01 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.40 3.67 6.13 -40.82 -0.25 3.42 16 38 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.11 0.51 7.18 -51.93 -0.37 0.13 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.54 7.83 -51.93 -0.41 0.13 16 43 H 0.10 0.83 7.42 -51.93 -0.39 0.45 16 44 H 0.07 0.86 7.74 -51.93 -0.40 0.46 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -31.71 371.24 -7.66 -39.36 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.69 Total: 7.82 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.88 Total: -4.29 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.15 Total: -54.23 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.09 Total: -7.15 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.11 Total: -4.58 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.71 -7.66 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725617973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.655 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.11 seconds