Wall clock time and date at job start Tue Mar 31 2020 21:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.01108 * 305.69465 * 11 10 9 13 13 C 1.53873 * 110.03537 * 67.09058 * 11 10 9 14 14 C 1.54263 * 106.59601 * 119.28547 * 13 11 10 15 15 C 1.54891 * 104.19869 * 23.60807 * 14 13 11 16 16 H 1.09000 * 110.75609 * 80.37015 * 15 14 13 17 17 N 1.46502 * 110.75585 * 203.55851 * 15 14 13 18 18 C 1.34778 * 119.99783 * 273.54558 * 17 15 14 19 19 O 1.21280 * 120.00212 * 0.02562 * 18 17 15 20 20 C 1.50696 * 119.99683 * 180.02562 * 18 17 15 21 21 C 1.53002 * 112.85120 * 50.33320 * 20 18 17 22 22 F 1.39901 * 109.46927 * 69.66587 * 21 20 18 23 23 F 1.39901 * 109.47148 * 189.66259 * 21 20 18 24 24 F 1.39900 * 109.47104 * 309.66710 * 21 20 18 25 25 C 1.53780 * 113.61622 * 279.13482 * 20 18 17 26 26 C 1.54044 * 86.98582 * 270.83990 * 25 20 18 27 27 C 1.53783 * 113.61632 * 181.52627 * 20 18 17 28 28 C 1.54269 * 110.02771 * 184.31259 * 11 10 9 29 29 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 31 31 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 32 32 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 33 33 H 1.08997 * 110.03038 * 238.56897 * 13 11 10 34 34 H 1.08998 * 110.02918 * 0.02562 * 13 11 10 35 35 H 1.09004 * 110.48384 * 142.29070 * 14 13 11 36 36 H 1.09001 * 110.48669 * 264.92896 * 14 13 11 37 37 H 0.96999 * 120.00196 * 93.54961 * 17 15 14 38 38 H 1.08996 * 113.61395 * 25.43492 * 25 20 18 39 39 H 1.08998 * 113.61325 * 156.33358 * 25 20 18 40 40 H 1.09007 * 113.61740 * 220.01583 * 26 25 20 41 41 H 1.08999 * 113.61099 * 89.11776 * 26 25 20 42 42 H 1.08993 * 113.62025 * 203.66258 * 27 20 18 43 43 H 1.09003 * 113.61581 * 334.49277 * 27 20 18 44 44 H 1.09004 * 110.48443 * 335.77499 * 28 11 10 45 45 H 1.09000 * 110.48808 * 98.42722 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3667 -4.7193 0.8119 13 6 0.2938 -4.8473 -1.3522 14 6 0.6079 -6.2046 -2.0146 15 6 1.0140 -7.1193 -0.8324 16 1 0.1318 -7.4960 -0.3147 17 7 1.8531 -8.2267 -1.2972 18 6 1.2823 -9.3593 -1.7531 19 8 0.0742 -9.4617 -1.7790 20 6 2.1455 -10.4986 -2.2306 21 6 3.2367 -10.8782 -1.2276 22 9 2.6515 -11.4730 -0.1047 23 9 4.1247 -11.7801 -1.8236 24 9 3.9317 -9.7284 -0.8372 25 6 2.6647 -10.3181 -3.6668 26 6 1.3789 -11.0262 -4.1339 27 6 1.3434 -11.7022 -2.7530 28 6 1.8187 -6.1611 0.0817 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0068 31 1 2.6846 -3.7098 -0.9038 32 1 2.6846 -3.7192 0.8761 33 1 -0.7768 -4.7613 -1.1665 34 1 0.6289 -4.0326 -1.9940 35 1 -0.2765 -6.5984 -2.5154 36 1 1.4332 -6.1032 -2.7194 37 1 2.8194 -8.1447 -1.2767 38 1 2.7294 -9.2761 -3.9800 39 1 3.5741 -10.8813 -3.8763 40 1 1.5384 -11.7228 -4.9571 41 1 0.5450 -10.3464 -4.3089 42 1 1.8922 -12.6431 -2.7133 43 1 0.3425 -11.7776 -2.3280 44 1 2.8398 -6.0528 -0.2842 45 1 1.8171 -6.5226 1.1100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725617973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:22 Heat of formation + Delta-G solvation = -187.068443 kcal Electronic energy + Delta-G solvation = -29897.125137 eV Core-core repulsion = 25306.128677 eV Total energy + Delta-G solvation = -4590.996460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 11.09 seconds Orbital eigenvalues (eV) -51.30496 -48.82755 -48.74748 -41.83100 -39.86311 -38.34474 -36.47085 -34.94337 -32.96348 -30.36128 -30.06745 -28.77994 -26.89643 -26.27266 -24.95551 -23.97306 -23.10436 -21.78138 -20.80813 -20.39082 -19.62267 -19.53072 -19.33816 -19.04839 -17.50038 -17.37155 -16.85309 -16.56935 -16.20735 -15.92003 -15.64614 -15.54688 -15.27404 -15.20038 -15.12882 -15.09851 -14.90827 -14.76947 -14.49069 -14.27685 -13.98617 -13.56429 -13.40152 -13.32306 -13.32096 -12.92570 -12.76578 -12.52660 -12.22186 -12.11943 -12.07772 -11.88105 -11.75912 -11.72626 -11.66048 -11.54370 -11.29671 -11.09389 -10.90408 -10.20582 -8.98216 -7.94286 -5.22808 1.05136 1.47210 1.50377 1.56548 1.65114 1.80359 2.51211 2.56736 2.68212 2.85322 3.29785 3.38986 3.43418 3.48068 3.55581 3.65521 3.68885 3.84474 4.18541 4.23323 4.33923 4.42739 4.48092 4.56209 4.57262 4.63555 4.64822 4.76825 4.79639 4.88708 4.89661 4.97535 5.00524 5.09059 5.14838 5.22775 5.27772 5.37981 5.42516 5.50708 5.54259 6.28087 6.30849 6.95599 7.34314 8.11827 8.34655 9.29249 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.002303 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.110728 B =12157.563827 C =12542.338234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.160 3.840 11 C -0.089 4.089 12 H 0.066 0.934 13 C -0.111 4.111 14 C -0.120 4.120 15 C 0.145 3.855 16 H 0.086 0.914 17 N -0.706 5.706 18 C 0.540 3.460 19 O -0.548 6.548 20 C -0.173 4.173 21 C 0.472 3.528 22 F -0.184 7.184 23 F -0.166 7.166 24 F -0.179 7.179 25 C -0.108 4.108 26 C -0.129 4.129 27 C -0.108 4.108 28 C -0.109 4.109 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.023 0.977 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.858 -29.027 -7.628 31.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.034 3.966 11 C -0.108 4.108 12 H 0.085 0.915 13 C -0.150 4.150 14 C -0.158 4.158 15 C 0.040 3.960 16 H 0.104 0.896 17 N -0.359 5.359 18 C 0.324 3.676 19 O -0.426 6.426 20 C -0.178 4.178 21 C 0.417 3.583 22 F -0.166 7.166 23 F -0.147 7.147 24 F -0.160 7.160 25 C -0.145 4.145 26 C -0.166 4.166 27 C -0.145 4.145 28 C -0.147 4.147 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.041 0.959 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.253 0.747 38 H 0.109 0.891 39 H 0.146 0.854 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.202 -28.992 -7.601 30.825 hybrid contribution 0.351 1.361 0.560 1.513 sum 7.553 -27.631 -7.041 29.497 Atomic orbital electron populations 1.69814 1.06647 1.26127 1.59541 1.25581 0.96398 1.01153 1.03782 0.85206 0.77193 0.79119 0.78221 1.20318 1.22208 1.20375 1.19619 0.91514 0.85464 1.41199 0.90663 1.42587 1.05671 1.01213 1.89332 1.20899 0.93627 0.84562 0.97536 1.21761 0.97064 0.94055 0.97939 0.91522 1.22026 0.99747 0.97042 0.96147 1.22620 1.01602 0.94079 0.97532 1.21941 0.93883 0.85330 0.94810 0.89640 1.46192 1.11598 1.14596 1.63562 1.19520 0.87945 0.82953 0.77181 1.90726 1.15079 1.81812 1.54955 1.23709 0.96419 1.00443 0.97241 1.20067 0.82451 0.74885 0.80873 1.93212 1.84048 1.84400 1.54921 1.93193 1.70157 1.68197 1.83195 1.93080 1.81133 1.49847 1.91950 1.23187 1.00616 1.04264 0.86450 1.22820 0.96817 0.99878 0.97073 1.22970 1.00625 0.94479 0.96435 1.22522 0.99483 0.92427 1.00259 0.94024 0.79431 0.95945 0.96234 0.92433 0.92738 0.91779 0.90614 0.74685 0.89071 0.85421 0.87452 0.90565 0.86264 0.90045 0.89430 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 2 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 3 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.25 -13.85 9.99 84.04 0.84 -13.01 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -38.08 5.36 -343.44 -1.84 -39.92 16 10 C 0.16 6.25 5.28 86.38 0.46 6.71 16 11 C -0.09 -2.76 2.97 -10.07 -0.03 -2.79 16 12 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 13 C -0.11 -3.45 6.16 31.32 0.19 -3.25 16 14 C -0.12 -2.99 6.51 31.67 0.21 -2.79 16 15 C 0.14 3.32 3.18 46.31 0.15 3.47 16 16 H 0.09 2.20 7.70 -2.39 -0.02 2.18 16 17 N -0.71 -13.71 4.92 -436.31 -2.15 -15.86 16 18 C 0.54 11.35 6.61 87.66 0.58 11.93 16 19 O -0.55 -15.32 15.56 -3.03 -0.05 -15.37 16 20 C -0.17 -2.55 0.86 -52.40 -0.04 -2.59 16 21 C 0.47 7.17 2.64 71.98 0.19 7.36 16 22 F -0.18 -3.46 17.18 44.97 0.77 -2.69 16 23 F -0.17 -2.18 15.74 44.97 0.71 -1.47 16 24 F -0.18 -2.76 14.55 44.97 0.65 -2.10 16 25 C -0.11 -1.03 7.12 31.21 0.22 -0.81 16 26 C -0.13 -1.32 7.76 31.21 0.24 -1.08 16 27 C -0.11 -1.34 6.83 31.12 0.21 -1.13 16 28 C -0.11 -2.50 5.98 31.70 0.19 -2.31 16 29 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 30 H 0.37 20.38 7.53 -92.71 -0.70 19.68 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.96 7.60 -2.39 -0.02 1.94 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.41 6.56 6.13 -92.71 -0.57 5.99 16 38 H 0.09 0.87 8.09 -2.39 -0.02 0.85 16 39 H 0.13 0.74 7.18 -2.39 -0.02 0.72 16 40 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.12 1.00 7.83 -2.39 -0.02 0.98 16 43 H 0.08 1.34 7.42 -2.39 -0.02 1.32 16 44 H 0.09 1.81 7.74 -2.39 -0.02 1.79 16 45 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -68.38 371.24 4.04 -64.35 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.24 Total: 28.74 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 3.87 Total: -4.28 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -3.71 Total: -115.53 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.05 Total: -15.37 kcal Atomic # 9 Polarization: -8.40 SS G_CDS: 2.13 Total: -6.26 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -68.38 4.04 -64.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725617973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.722 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.09 seconds