Wall clock time and date at job start Tue Mar 31 2020 21:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00230 * 2 1 4 4 H 1.48494 * 109.47041 * 270.00383 * 3 2 1 5 5 H 1.48498 * 109.46751 * 30.00218 * 3 2 1 6 6 H 1.48498 * 109.47120 * 149.99985 * 3 2 1 7 7 C 1.38809 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00329 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00176 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47436 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.43512 * 52.45316 * 11 10 9 13 13 C 1.54895 * 110.59561 * 289.84035 * 11 10 9 14 14 C 1.54970 * 102.77708 * 203.34852 * 13 11 10 15 15 C 1.54268 * 104.15859 * 37.88818 * 14 13 11 16 16 H 1.08992 * 110.03396 * 95.75375 * 15 14 13 17 17 N 1.46499 * 110.02866 * 217.13867 * 15 14 13 18 18 C 1.34784 * 119.99893 * 272.90659 * 17 15 14 19 19 O 1.21691 * 119.99713 * 359.97438 * 18 17 15 20 20 C 1.46655 * 119.99922 * 179.72855 * 18 17 15 21 21 O 1.35398 * 126.12101 * 0.02562 * 20 18 17 22 22 C 1.34392 * 109.47617 * 179.89911 * 21 20 18 23 23 C 1.33899 * 108.56249 * 359.97438 * 22 21 20 24 24 C 1.35185 * 126.11763 * 179.71443 * 20 18 17 25 25 C 1.50730 * 130.57450 * 0.93940 * 24 20 18 26 26 C 1.53675 * 107.49298 * 163.76529 * 25 24 20 27 27 O 1.42898 * 109.97674 * 48.04432 * 26 25 24 28 28 C 1.43513 * 114.76459 * 287.61759 * 27 26 25 29 29 C 1.53874 * 106.64178 * 336.44508 * 15 14 13 30 30 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99799 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47303 * 59.99548 * 10 9 7 33 33 H 1.09003 * 109.47081 * 299.99734 * 10 9 7 34 34 H 1.08999 * 110.75654 * 321.63484 * 13 11 10 35 35 H 1.09003 * 110.75589 * 84.82368 * 13 11 10 36 36 H 1.08998 * 110.47269 * 279.23257 * 14 13 11 37 37 H 1.08995 * 110.53141 * 156.56523 * 14 13 11 38 38 H 0.97005 * 120.00261 * 92.90871 * 17 15 14 39 39 H 1.08004 * 125.71792 * 179.97438 * 22 21 20 40 40 H 1.08997 * 110.00065 * 44.16706 * 25 24 20 41 41 H 1.09000 * 109.73061 * 283.20592 * 25 24 20 42 42 H 1.08998 * 109.38790 * 287.88951 * 26 25 24 43 43 H 1.09003 * 109.30381 * 168.14918 * 26 25 24 44 44 H 1.09002 * 109.82271 * 291.95865 * 28 27 26 45 45 H 1.08996 * 109.87798 * 171.06533 * 28 27 26 46 46 H 1.08992 * 110.03439 * 119.25985 * 29 15 14 47 47 H 1.09002 * 110.03555 * 240.64659 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3437 -4.7043 -0.8113 13 6 0.3351 -4.9144 1.3624 14 6 -0.1159 -6.3963 1.4078 15 6 1.0571 -7.1675 0.7681 16 1 1.7226 -7.5458 1.5439 17 7 0.5464 -8.2777 -0.0398 18 6 0.3039 -9.4730 0.5340 19 8 0.5097 -9.6299 1.7230 20 6 -0.2129 -10.5827 -0.2736 21 8 -0.4891 -10.5446 -1.5985 22 6 -0.9427 -11.7455 -1.9964 23 6 -0.9628 -12.5655 -0.9381 24 6 -0.4933 -11.8283 0.1705 25 6 -0.3880 -12.4238 1.5512 26 6 -1.2095 -13.7225 1.5580 27 8 -0.8787 -14.5154 0.4162 28 6 -1.3778 -14.0107 -0.8312 29 6 1.8071 -6.1656 -0.1271 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6847 -3.7145 0.8894 33 1 2.6846 -3.7146 -0.8906 34 1 1.0191 -4.6941 2.1820 35 1 -0.5247 -4.2448 1.3882 36 1 -1.0268 -6.5356 0.8257 37 1 -0.2674 -6.7183 2.4380 38 1 0.3828 -8.1527 -0.9878 39 1 -1.2409 -12.0056 -3.0013 40 1 -0.7885 -11.7283 2.2887 41 1 0.6550 -12.6441 1.7783 42 1 -2.2717 -13.4789 1.5340 43 1 -0.9877 -14.2844 2.4653 44 1 -2.4650 -14.0859 -0.8519 45 1 -0.9523 -14.5795 -1.6579 46 1 2.8363 -6.0570 0.2149 47 1 1.7919 -6.5058 -1.1626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725654110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:47 Heat of formation + Delta-G solvation = -64.846250 kcal Electronic energy + Delta-G solvation = -28125.541970 eV Core-core repulsion = 24081.702203 eV Total energy + Delta-G solvation = -4043.839768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -43.22901 -39.97491 -38.96895 -38.02732 -34.95596 -34.02122 -33.39818 -32.46408 -31.14285 -29.77533 -28.80527 -27.66436 -26.67528 -24.67299 -23.99936 -23.15236 -22.17818 -20.51409 -20.40923 -20.06213 -19.65397 -18.39773 -17.03019 -16.93329 -16.72464 -16.59997 -16.23369 -15.65250 -15.34826 -15.03241 -14.90893 -14.58834 -14.23128 -13.95454 -13.86161 -13.59290 -13.39603 -13.08018 -13.03134 -12.80579 -12.64136 -12.21059 -12.00833 -11.87265 -11.34487 -11.32729 -11.10326 -10.85415 -10.76164 -10.57947 -10.51010 -10.29122 -10.23929 -10.15041 -9.95081 -9.86231 -9.66284 -9.31024 -8.94835 -8.84934 -6.89336 -5.75014 -3.03089 0.71376 1.80394 2.30355 2.89695 2.97860 3.33646 3.44394 3.49481 3.51251 4.00738 4.19400 4.42945 4.51549 4.58227 4.67985 4.76752 4.77374 4.81387 4.88859 5.02564 5.04506 5.23249 5.38195 5.43507 5.50571 5.52806 5.56213 5.59296 5.62561 5.64761 5.66022 5.86258 5.87485 5.90545 6.06613 6.12337 6.25632 6.29827 6.33994 6.49612 6.55830 6.59675 6.66703 6.81306 6.94524 7.26015 7.71502 7.86483 8.44340 9.55388 10.14387 10.48986 11.47989 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036421 B = 0.001806 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.600257 B =15497.149845 C =15795.912460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.160 3.840 11 C -0.097 4.097 12 H 0.075 0.925 13 C -0.111 4.111 14 C -0.134 4.134 15 C 0.140 3.860 16 H 0.093 0.907 17 N -0.710 5.710 18 C 0.601 3.399 19 O -0.518 6.518 20 C -0.065 4.065 21 O -0.167 6.167 22 C 0.015 3.985 23 C -0.240 4.240 24 C -0.084 4.084 25 C -0.087 4.087 26 C 0.062 3.938 27 O -0.379 6.379 28 C 0.135 3.865 29 C -0.123 4.123 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.405 0.595 39 H 0.213 0.787 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 -30.637 -2.327 30.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.032 3.968 11 C -0.116 4.116 12 H 0.094 0.906 13 C -0.148 4.148 14 C -0.172 4.172 15 C 0.037 3.963 16 H 0.111 0.889 17 N -0.360 5.360 18 C 0.387 3.613 19 O -0.395 6.395 20 C -0.116 4.116 21 O -0.063 6.063 22 C -0.054 4.054 23 C -0.242 4.242 24 C -0.087 4.087 25 C -0.124 4.124 26 C -0.015 4.015 27 O -0.297 6.297 28 C 0.059 3.941 29 C -0.161 4.161 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.240 0.760 39 H 0.229 0.771 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.120 0.880 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.097 0.903 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.628 -30.505 -1.604 30.762 hybrid contribution -0.147 1.209 -0.702 1.406 sum -3.776 -29.296 -2.306 29.628 Atomic orbital electron populations 1.69661 1.05093 1.25575 1.57970 1.24738 0.95534 0.97678 1.03185 0.86188 0.78651 0.83882 0.77476 1.21783 1.21793 1.20791 1.19243 0.91031 0.84252 1.42396 0.91242 1.42347 1.05867 0.99952 1.89416 1.20693 0.93063 0.85327 0.97678 1.22153 0.97835 0.93661 0.97924 0.90645 1.22481 1.00665 0.94292 0.97410 1.22813 0.97554 0.96003 1.00853 1.21829 0.95750 0.85311 0.93457 0.88885 1.46196 1.65813 1.10701 1.13284 1.16524 0.77853 0.80894 0.86015 1.90870 1.52693 1.82384 1.13599 1.21493 1.11271 0.96904 0.81973 1.84324 1.64960 1.33567 1.23445 1.23635 0.99897 0.82047 0.99806 1.21032 1.09492 0.99719 0.93917 1.20206 0.99466 0.91697 0.97365 1.20899 1.02628 0.96828 0.92087 1.22716 0.98092 0.91765 0.88893 1.87988 1.77754 1.49287 1.14714 1.21037 0.98171 0.87596 0.87308 1.22440 0.99944 0.94544 0.99195 0.93569 0.78278 0.96216 0.96540 0.91102 0.90804 0.91447 0.91311 0.76008 0.77095 0.88315 0.89086 0.92711 0.87961 0.91446 0.87558 0.90306 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.49 5.49 -59.91 -0.33 -18.82 16 10 C 0.16 3.17 5.55 -4.05 -0.02 3.15 16 11 C -0.10 -1.50 2.88 -88.96 -0.26 -1.75 16 12 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.11 -1.68 6.20 -24.69 -0.15 -1.83 16 14 C -0.13 -1.73 6.54 -25.03 -0.16 -1.90 16 15 C 0.14 1.69 3.23 -66.81 -0.22 1.48 16 16 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 17 N -0.71 -7.86 5.04 -54.04 -0.27 -8.13 16 18 C 0.60 7.54 7.78 -12.86 -0.10 7.44 16 19 O -0.52 -7.74 15.30 5.20 0.08 -7.66 16 20 C -0.07 -0.73 7.11 -37.27 -0.27 -1.00 16 21 O -0.17 -1.58 10.44 2.34 0.02 -1.56 16 22 C 0.02 0.11 12.06 29.21 0.35 0.46 16 23 C -0.24 -1.99 6.04 -105.02 -0.63 -2.62 16 24 C -0.08 -0.89 6.02 -104.58 -0.63 -1.52 16 25 C -0.09 -0.82 5.71 -27.52 -0.16 -0.98 16 26 C 0.06 0.46 6.75 37.51 0.25 0.72 16 27 O -0.38 -3.33 10.70 -35.23 -0.38 -3.71 16 28 C 0.14 0.88 7.27 36.02 0.26 1.14 16 29 C -0.12 -1.50 6.14 -25.61 -0.16 -1.66 16 30 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 31 H 0.38 10.15 7.64 -40.82 -0.31 9.84 16 32 H 0.02 0.40 8.03 -51.93 -0.42 -0.02 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 1.11 7.98 -51.93 -0.41 0.70 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 3.79 8.07 -40.82 -0.33 3.46 16 39 H 0.21 0.51 8.06 -52.48 -0.42 0.09 16 40 H 0.10 0.97 7.64 -51.93 -0.40 0.57 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 47 H 0.07 0.75 7.61 -51.93 -0.40 0.35 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -33.88 383.52 -8.78 -42.67 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.25 Total: 7.82 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.13 Total: -6.28 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.12 Total: -54.59 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.27 Total: -12.92 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.88 -8.78 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725654110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.181 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds