Wall clock time and date at job start Tue Mar 31 2020 21:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00230 * 2 1 4 4 H 1.48494 * 109.47041 * 270.00383 * 3 2 1 5 5 H 1.48498 * 109.46751 * 30.00218 * 3 2 1 6 6 H 1.48498 * 109.47120 * 149.99985 * 3 2 1 7 7 C 1.38809 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00329 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00176 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47436 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.43512 * 52.45316 * 11 10 9 13 13 C 1.54895 * 110.59561 * 289.84035 * 11 10 9 14 14 C 1.54970 * 102.77708 * 203.34852 * 13 11 10 15 15 C 1.54268 * 104.15859 * 37.88818 * 14 13 11 16 16 H 1.08992 * 110.03396 * 95.75375 * 15 14 13 17 17 N 1.46499 * 110.02866 * 217.13867 * 15 14 13 18 18 C 1.34784 * 119.99893 * 272.90659 * 17 15 14 19 19 O 1.21691 * 119.99713 * 359.97438 * 18 17 15 20 20 C 1.46655 * 119.99922 * 179.72855 * 18 17 15 21 21 O 1.35398 * 126.12101 * 0.02562 * 20 18 17 22 22 C 1.34392 * 109.47617 * 179.89911 * 21 20 18 23 23 C 1.33899 * 108.56249 * 359.97438 * 22 21 20 24 24 C 1.35185 * 126.11763 * 179.71443 * 20 18 17 25 25 C 1.50730 * 130.57450 * 0.93940 * 24 20 18 26 26 C 1.53675 * 107.49298 * 163.76529 * 25 24 20 27 27 O 1.42898 * 109.97674 * 48.04432 * 26 25 24 28 28 C 1.43513 * 114.76459 * 287.61759 * 27 26 25 29 29 C 1.53874 * 106.64178 * 336.44508 * 15 14 13 30 30 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99799 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47303 * 59.99548 * 10 9 7 33 33 H 1.09003 * 109.47081 * 299.99734 * 10 9 7 34 34 H 1.08999 * 110.75654 * 321.63484 * 13 11 10 35 35 H 1.09003 * 110.75589 * 84.82368 * 13 11 10 36 36 H 1.08998 * 110.47269 * 279.23257 * 14 13 11 37 37 H 1.08995 * 110.53141 * 156.56523 * 14 13 11 38 38 H 0.97005 * 120.00261 * 92.90871 * 17 15 14 39 39 H 1.08004 * 125.71792 * 179.97438 * 22 21 20 40 40 H 1.08997 * 110.00065 * 44.16706 * 25 24 20 41 41 H 1.09000 * 109.73061 * 283.20592 * 25 24 20 42 42 H 1.08998 * 109.38790 * 287.88951 * 26 25 24 43 43 H 1.09003 * 109.30381 * 168.14918 * 26 25 24 44 44 H 1.09002 * 109.82271 * 291.95865 * 28 27 26 45 45 H 1.08996 * 109.87798 * 171.06533 * 28 27 26 46 46 H 1.08992 * 110.03439 * 119.25985 * 29 15 14 47 47 H 1.09002 * 110.03555 * 240.64659 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3437 -4.7043 -0.8113 13 6 0.3351 -4.9144 1.3624 14 6 -0.1159 -6.3963 1.4078 15 6 1.0571 -7.1675 0.7681 16 1 1.7226 -7.5458 1.5439 17 7 0.5464 -8.2777 -0.0398 18 6 0.3039 -9.4730 0.5340 19 8 0.5097 -9.6299 1.7230 20 6 -0.2129 -10.5827 -0.2736 21 8 -0.4891 -10.5446 -1.5985 22 6 -0.9427 -11.7455 -1.9964 23 6 -0.9628 -12.5655 -0.9381 24 6 -0.4933 -11.8283 0.1705 25 6 -0.3880 -12.4238 1.5512 26 6 -1.2095 -13.7225 1.5580 27 8 -0.8787 -14.5154 0.4162 28 6 -1.3778 -14.0107 -0.8312 29 6 1.8071 -6.1656 -0.1271 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6847 -3.7145 0.8894 33 1 2.6846 -3.7146 -0.8906 34 1 1.0191 -4.6941 2.1820 35 1 -0.5247 -4.2448 1.3882 36 1 -1.0268 -6.5356 0.8257 37 1 -0.2674 -6.7183 2.4380 38 1 0.3828 -8.1527 -0.9878 39 1 -1.2409 -12.0056 -3.0013 40 1 -0.7885 -11.7283 2.2887 41 1 0.6550 -12.6441 1.7783 42 1 -2.2717 -13.4789 1.5340 43 1 -0.9877 -14.2844 2.4653 44 1 -2.4650 -14.0859 -0.8519 45 1 -0.9523 -14.5795 -1.6579 46 1 2.8363 -6.0570 0.2149 47 1 1.7919 -6.5058 -1.1626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725654110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:37 Heat of formation + Delta-G solvation = -88.120080 kcal Electronic energy + Delta-G solvation = -28126.551199 eV Core-core repulsion = 24081.702203 eV Total energy + Delta-G solvation = -4044.848997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 12.21 seconds Orbital eigenvalues (eV) -43.89359 -40.97678 -39.55519 -39.19959 -36.52351 -35.02489 -34.51870 -33.16636 -32.87255 -30.64326 -30.14289 -28.85226 -27.21173 -26.30121 -24.85027 -24.00408 -23.85336 -21.51589 -21.28765 -20.99165 -20.70999 -19.19720 -19.04074 -17.64447 -17.52585 -17.37407 -16.94473 -16.72624 -16.21567 -16.12409 -15.96508 -15.82269 -15.49885 -15.20070 -15.04998 -14.60558 -14.49116 -14.42611 -14.22802 -13.67897 -13.57408 -13.25335 -13.15877 -12.96321 -12.79833 -12.59577 -12.45661 -12.17156 -12.09162 -11.93229 -11.83130 -11.64900 -11.56274 -11.51284 -11.38994 -10.90777 -10.82170 -10.53381 -10.24714 -9.64895 -8.97618 -7.94640 -5.22753 -0.04328 1.19175 1.47189 1.48893 1.57360 1.58645 1.99989 2.15425 2.56460 2.81739 3.38499 3.38720 3.50941 3.56005 3.64228 3.78679 3.86691 3.92969 4.16023 4.18382 4.28712 4.33934 4.41455 4.46881 4.49286 4.50653 4.59788 4.65151 4.70455 4.75915 4.78070 4.79415 4.84057 4.95956 5.01837 5.04321 5.05615 5.12946 5.21000 5.25225 5.35938 5.45414 5.48832 5.55317 5.73052 6.13073 6.28170 6.38949 6.96133 7.34378 8.11999 8.34851 9.28981 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036421 B = 0.001806 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.600257 B =15497.149845 C =15795.912460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.158 3.842 11 C -0.088 4.088 12 H 0.071 0.929 13 C -0.108 4.108 14 C -0.123 4.123 15 C 0.148 3.852 16 H 0.087 0.913 17 N -0.700 5.700 18 C 0.600 3.400 19 O -0.551 6.551 20 C -0.094 4.094 21 O -0.172 6.172 22 C 0.036 3.964 23 C -0.256 4.256 24 C -0.096 4.096 25 C -0.089 4.089 26 C 0.065 3.935 27 O -0.398 6.398 28 C 0.132 3.868 29 C -0.110 4.110 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.415 0.585 39 H 0.260 0.740 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.129 0.871 46 H 0.085 0.915 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.830 -32.365 -3.899 32.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.031 3.969 11 C -0.107 4.107 12 H 0.090 0.910 13 C -0.146 4.146 14 C -0.162 4.162 15 C 0.044 3.956 16 H 0.105 0.895 17 N -0.351 5.351 18 C 0.387 3.613 19 O -0.431 6.431 20 C -0.145 4.145 21 O -0.069 6.069 22 C -0.032 4.032 23 C -0.258 4.258 24 C -0.099 4.099 25 C -0.126 4.126 26 C -0.011 4.011 27 O -0.316 6.316 28 C 0.056 3.944 29 C -0.149 4.149 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.252 0.748 39 H 0.275 0.725 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.103 0.897 45 H 0.146 0.854 46 H 0.104 0.896 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.339 -32.261 -3.200 32.591 hybrid contribution -0.232 1.651 -0.257 1.687 sum -3.571 -30.610 -3.456 31.011 Atomic orbital electron populations 1.69818 1.06580 1.26010 1.59646 1.25572 0.96433 1.01117 1.03862 0.85135 0.77676 0.79487 0.77439 1.21349 1.22220 1.19511 1.19656 0.91514 0.85503 1.40992 0.90728 1.42565 1.05654 1.01167 1.89303 1.20872 0.93766 0.84677 0.97541 1.22021 0.97090 0.93787 0.97845 0.91026 1.22394 0.99728 0.95444 0.97081 1.22702 0.98072 0.94382 1.01037 1.21627 0.95124 0.85424 0.93402 0.89474 1.46063 1.65371 1.10044 1.13633 1.16712 0.77352 0.81387 0.85813 1.90844 1.54225 1.83039 1.15022 1.21207 1.13586 0.96795 0.82917 1.84315 1.65201 1.34874 1.22473 1.24586 0.96935 0.80506 1.01213 1.21338 1.10152 1.00808 0.93491 1.20568 0.98972 0.91992 0.98415 1.20903 1.02317 0.97712 0.91703 1.22752 0.98102 0.90867 0.89389 1.87958 1.78273 1.49742 1.15662 1.21320 0.99379 0.86618 0.87034 1.22331 0.99640 0.92319 1.00573 0.94050 0.79412 0.96198 0.96104 0.91908 0.92797 0.91084 0.91505 0.74822 0.72477 0.89381 0.90154 0.91838 0.86503 0.89688 0.85358 0.89647 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -37.97 5.49 -343.46 -1.89 -39.85 16 10 C 0.16 6.18 5.55 86.38 0.48 6.66 16 11 C -0.09 -2.69 2.88 -9.72 -0.03 -2.72 16 12 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 13 C -0.11 -3.32 6.20 31.92 0.20 -3.13 16 14 C -0.12 -3.17 6.54 31.70 0.21 -2.96 16 15 C 0.15 3.45 3.23 45.72 0.15 3.60 16 16 H 0.09 2.20 7.58 -2.39 -0.02 2.18 16 17 N -0.70 -14.83 5.04 -443.08 -2.23 -17.07 16 18 C 0.60 14.99 7.78 86.44 0.67 15.66 16 19 O -0.55 -16.86 15.30 -4.32 -0.07 -16.93 16 20 C -0.09 -2.06 7.11 23.76 0.17 -1.89 16 21 O -0.17 -2.93 10.44 -14.53 -0.15 -3.08 16 22 C 0.04 0.39 12.06 66.83 0.81 1.19 16 23 C -0.26 -3.68 6.04 -20.12 -0.12 -3.80 16 24 C -0.10 -1.97 6.02 -19.84 -0.12 -2.09 16 25 C -0.09 -1.70 5.71 30.08 0.17 -1.53 16 26 C 0.07 0.92 6.75 72.21 0.49 1.41 16 27 O -0.40 -6.34 10.70 -148.98 -1.59 -7.93 16 28 C 0.13 1.36 7.27 71.25 0.52 1.88 16 29 C -0.11 -2.51 6.14 31.32 0.19 -2.32 16 30 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.37 20.26 7.64 -92.71 -0.71 19.55 16 32 H 0.02 0.79 8.03 -2.39 -0.02 0.77 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 34 H 0.06 2.01 7.98 -2.39 -0.02 1.99 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.78 8.05 -2.39 -0.02 1.76 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.41 7.09 8.07 -92.70 -0.75 6.34 16 39 H 0.26 -0.03 8.06 -2.91 -0.02 -0.05 16 40 H 0.09 1.82 7.64 -2.39 -0.02 1.81 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 0.77 8.08 -2.39 -0.02 0.75 16 43 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.08 1.89 7.84 -2.39 -0.02 1.87 16 47 H 0.09 1.71 7.61 -2.39 -0.02 1.69 16 Total: -1.00 -74.04 383.52 1.01 -73.04 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.46 Total: 29.86 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.09 Total: -7.04 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -3.84 Total: -116.45 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.81 Total: -27.94 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -74.04 1.01 -73.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725654110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.082 kcal (2) G-P(sol) polarization free energy of solvation -74.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.21 seconds