Wall clock time and date at job start Tue Mar 31 2020 21:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99829 * 2 1 4 4 H 1.48503 * 109.47314 * 275.13437 * 3 2 1 5 5 H 1.48497 * 109.46953 * 35.13827 * 3 2 1 6 6 H 1.48504 * 109.46819 * 155.13423 * 3 2 1 7 7 C 1.38813 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99904 * 339.81792 * 7 2 1 9 9 N 1.36931 * 120.00321 * 159.82282 * 7 2 1 10 10 C 1.46499 * 119.99754 * 322.02167 * 9 7 2 11 11 C 1.52996 * 109.47317 * 269.99892 * 10 9 7 12 12 C 1.53006 * 109.47638 * 179.97438 * 11 10 9 13 13 N 1.46492 * 109.47265 * 180.02562 * 12 11 10 14 14 C 1.34776 * 119.99910 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99955 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00460 * 179.97438 * 14 13 12 17 17 C 1.52994 * 109.47464 * 182.81380 * 16 14 13 18 18 C 1.53004 * 115.55126 * 272.42446 * 17 16 14 19 19 F 1.39897 * 109.46918 * 61.38592 * 18 17 16 20 20 F 1.39899 * 109.46969 * 181.38711 * 18 17 16 21 21 F 1.39900 * 109.47086 * 301.38476 * 18 17 16 22 22 C 1.52999 * 117.49954 * 126.71493 * 17 16 14 23 23 C 1.52999 * 60.00088 * 252.51092 * 22 17 16 24 24 C 1.46505 * 120.00512 * 142.02130 * 9 7 2 25 25 C 1.53000 * 117.49198 * 3.87684 * 24 9 7 26 26 C 1.52997 * 117.49897 * 295.25597 * 24 9 7 27 27 H 0.96999 * 120.00394 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47026 * 30.00173 * 10 9 7 29 29 H 1.09002 * 109.47137 * 150.00058 * 10 9 7 30 30 H 1.08998 * 109.47303 * 300.00112 * 11 10 9 31 31 H 1.09002 * 109.46881 * 60.00010 * 11 10 9 32 32 H 1.08998 * 109.46921 * 300.00414 * 12 11 10 33 33 H 1.08996 * 109.46644 * 59.99762 * 12 11 10 34 34 H 0.96996 * 120.00120 * 0.02562 * 13 12 11 35 35 H 1.08995 * 109.46764 * 302.81864 * 16 14 13 36 36 H 1.09001 * 109.46950 * 62.81569 * 16 14 13 37 37 H 1.09005 * 117.50028 * 0.02562 * 22 17 16 38 38 H 1.08999 * 117.50331 * 145.02194 * 22 17 16 39 39 H 1.09000 * 117.50055 * 252.50683 * 23 22 17 40 40 H 1.08999 * 117.49746 * 107.48912 * 23 22 17 41 41 H 1.09001 * 115.55210 * 149.58070 * 24 9 7 42 42 H 1.08992 * 117.50581 * 359.97438 * 25 24 9 43 43 H 1.09003 * 117.49382 * 145.02110 * 25 24 9 44 44 H 1.08994 * 117.49775 * 214.97411 * 26 24 9 45 45 H 1.08997 * 117.49866 * 359.97327 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3892 2.1092 -1.3945 5 1 1.5061 2.6188 0.8058 6 1 3.5978 1.4113 0.5887 7 6 2.0103 -1.2021 -0.0005 8 1 1.5200 -2.1089 0.3217 9 7 3.3166 -1.2384 -0.4096 10 6 3.7556 -0.4073 -1.5333 11 6 3.5923 -1.1876 -2.8391 12 6 4.0502 -0.3195 -4.0129 13 7 3.8933 -1.0665 -5.2632 14 6 4.2363 -0.4974 -6.4358 15 8 4.6744 0.6334 -6.4558 16 6 4.0755 -1.2660 -7.7221 17 6 4.5989 -0.4247 -8.8878 18 6 3.5833 0.5272 -9.5229 19 9 3.1493 1.4516 -8.5667 20 9 4.1836 1.2059 -10.5889 21 9 2.4886 -0.2054 -9.9939 22 6 5.6406 -1.0637 -9.8083 23 6 6.0570 0.0351 -8.8284 24 6 4.2753 -2.1082 0.2765 25 6 3.7373 -3.0185 1.3823 26 6 4.5874 -1.7983 1.7419 27 1 -0.4851 0.8400 0.0004 28 1 3.1506 0.4986 -1.5733 29 1 4.8034 -0.1388 -1.3991 30 1 4.1972 -2.0935 -2.7991 31 1 2.5445 -1.4561 -2.9734 32 1 3.4449 0.5862 -4.0527 33 1 5.0979 -0.0506 -3.8788 34 1 3.5426 -1.9707 -5.2472 35 1 4.6407 -2.1960 -7.6626 36 1 3.0209 -1.4912 -7.8813 37 1 5.9528 -2.0836 -9.5837 38 1 5.6026 -0.8061 -10.8668 39 1 6.2929 1.0155 -9.2422 40 1 6.6433 -0.2618 -7.9589 41 1 5.0876 -2.4918 -0.3409 42 1 2.6704 -2.9699 1.5997 43 1 4.1957 -4.0013 1.4926 44 1 5.6049 -1.9783 2.0886 45 1 4.0799 -0.9469 2.1954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731333993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:27 Heat of formation + Delta-G solvation = -115.917731 kcal Electronic energy + Delta-G solvation = -29237.186282 eV Core-core repulsion = 24649.275148 eV Total energy + Delta-G solvation = -4587.911133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.22217 -47.80519 -47.61382 -40.02600 -37.84741 -37.36329 -35.36916 -33.69037 -31.97494 -30.63418 -29.25078 -26.88973 -25.20856 -23.76613 -23.00708 -21.77904 -21.31584 -21.21594 -20.19432 -19.64623 -18.55300 -18.41302 -17.76495 -16.96437 -16.57855 -15.86326 -15.74676 -15.37764 -15.31391 -14.99413 -14.57880 -14.42948 -14.19334 -14.13057 -13.90358 -13.81795 -13.76439 -13.66614 -13.59798 -12.78858 -12.60053 -12.45988 -12.18587 -12.12070 -11.99228 -11.80707 -11.18568 -11.09388 -11.04381 -10.85404 -10.82330 -10.70049 -10.39549 -10.04313 -9.82894 -9.71011 -9.46087 -9.45409 -8.97006 -8.57049 -6.79890 -6.06418 -3.50974 2.48927 2.62166 2.78560 3.26797 3.30339 3.43988 3.48667 3.55724 3.70410 4.04630 4.12497 4.45023 4.47372 4.51346 4.69232 4.82296 4.83639 5.01035 5.10417 5.15130 5.23152 5.26314 5.43624 5.50176 5.52668 5.63892 5.73862 5.76615 5.93858 5.97059 6.05000 6.15130 6.27707 6.38673 6.45469 6.54219 6.67365 6.83706 6.89310 7.07716 7.51682 7.98791 8.21948 8.32714 8.91289 9.63015 10.02185 11.08212 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.002531 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.765661 B =11062.209513 C =11793.058168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.039 3.961 3 Si 0.876 3.124 4 H -0.283 1.283 5 H -0.301 1.301 6 H -0.267 1.267 7 C -0.271 4.271 8 H 0.084 0.916 9 N -0.574 5.574 10 C 0.144 3.856 11 C -0.145 4.145 12 C 0.119 3.881 13 N -0.725 5.725 14 C 0.505 3.495 15 O -0.527 6.527 16 C -0.104 4.104 17 C -0.187 4.187 18 C 0.489 3.511 19 F -0.166 7.166 20 F -0.184 7.184 21 F -0.183 7.183 22 C -0.149 4.149 23 C -0.119 4.119 24 C 0.121 3.879 25 C -0.189 4.189 26 C -0.224 4.224 27 H 0.265 0.735 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.401 0.599 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.892 -5.117 -19.079 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.211 1.211 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.400 4.400 8 H 0.101 0.899 9 N -0.292 5.292 10 C 0.018 3.982 11 C -0.186 4.186 12 C -0.005 4.005 13 N -0.377 5.377 14 C 0.290 3.710 15 O -0.403 6.403 16 C -0.144 4.144 17 C -0.189 4.189 18 C 0.435 3.565 19 F -0.147 7.147 20 F -0.165 7.165 21 F -0.164 7.164 22 C -0.186 4.186 23 C -0.156 4.156 24 C 0.012 3.988 25 C -0.227 4.227 26 C -0.265 4.265 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.234 0.766 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.990 -4.144 -19.089 22.921 hybrid contribution -0.207 0.709 0.082 0.743 sum 11.784 -3.435 -19.007 22.626 Atomic orbital electron populations 1.69825 1.05952 1.26879 1.51185 1.25477 0.95107 0.97793 0.97828 0.86952 0.80743 0.84519 0.77145 1.21125 1.22903 1.19126 1.18735 0.84641 0.94269 1.42322 0.89885 1.43666 1.06362 1.48327 1.30889 1.21042 0.97575 0.93701 0.85884 1.22384 1.02684 0.98957 0.94552 1.21459 1.01197 0.95628 0.82228 1.46074 1.66098 1.18903 1.06584 1.20404 0.78304 0.87300 0.85032 1.90738 1.44408 1.18145 1.87003 1.21153 1.04510 0.98505 0.90188 1.22011 0.91939 1.03099 1.01883 1.19376 0.80751 0.80231 0.76173 1.93274 1.90351 1.67588 1.63489 1.93147 1.83449 1.81621 1.58304 1.93174 1.56891 1.77249 1.89121 1.23327 0.98277 0.99642 0.97330 1.23013 0.91521 0.99765 1.01307 1.21143 0.94291 0.96699 0.86669 1.23062 1.00955 0.93195 1.05471 1.23372 0.98803 1.00164 1.04163 0.92555 0.92615 0.93765 0.92083 0.90466 0.91573 0.91824 0.76552 0.87083 0.87557 0.86875 0.87364 0.87443 0.87008 0.89117 0.87911 0.90502 0.90825 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.97 55.49 0.78 -25.93 16 2 C 0.04 1.09 5.34 -17.43 -0.09 1.00 16 3 Si 0.88 21.92 24.91 -169.99 -4.24 17.68 16 4 H -0.28 -6.92 6.69 56.52 0.38 -6.54 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.27 -7.20 9.01 -15.06 -0.14 -7.34 16 8 H 0.08 2.39 6.80 -52.49 -0.36 2.03 16 9 N -0.57 -12.89 2.42 -165.66 -0.40 -13.29 16 10 C 0.14 2.90 4.52 -4.04 -0.02 2.89 16 11 C -0.15 -2.40 5.65 -26.73 -0.15 -2.55 16 12 C 0.12 1.78 5.67 -4.04 -0.02 1.75 16 13 N -0.72 -8.77 5.56 -60.30 -0.33 -9.10 16 14 C 0.50 6.29 7.47 -10.99 -0.08 6.20 16 15 O -0.53 -8.49 13.98 5.56 0.08 -8.41 16 16 C -0.10 -0.88 5.66 -27.89 -0.16 -1.04 16 17 C -0.19 -1.72 1.35 -154.51 -0.21 -1.93 16 18 C 0.49 5.56 3.05 37.16 0.11 5.67 16 19 F -0.17 -2.40 15.99 2.25 0.04 -2.36 16 20 F -0.18 -2.03 15.89 2.25 0.04 -1.99 16 21 F -0.18 -2.04 16.90 2.25 0.04 -2.01 16 22 C -0.15 -0.92 9.61 -26.73 -0.26 -1.18 16 23 C -0.12 -1.00 8.38 -26.73 -0.22 -1.23 16 24 C 0.12 2.33 6.57 -67.93 -0.45 1.88 16 25 C -0.19 -3.48 9.80 -26.73 -0.26 -3.75 16 26 C -0.22 -4.18 10.35 -26.73 -0.28 -4.46 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.06 1.27 3.14 -51.93 -0.16 1.10 16 29 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.40 3.77 8.47 -40.82 -0.35 3.43 16 35 H 0.11 0.59 7.89 -51.93 -0.41 0.18 16 36 H 0.11 0.83 7.71 -51.93 -0.40 0.43 16 37 H 0.11 0.47 8.04 -51.93 -0.42 0.05 16 38 H 0.11 0.62 7.74 -51.93 -0.40 0.22 16 39 H 0.11 0.94 7.82 -51.93 -0.41 0.53 16 40 H 0.11 0.95 8.04 -51.93 -0.42 0.53 16 41 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.10 2.16 6.42 -51.93 -0.33 1.83 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -31.97 376.54 -7.17 -39.13 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.61 Total: 4.67 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -2.22 Total: -4.06 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.04 Total: -48.32 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.11 Total: -6.36 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.24 Total: 17.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.97 -7.17 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731333993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.784 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds