Wall clock time and date at job start Tue Mar 31 2020 21:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99829 * 2 1 4 4 H 1.48503 * 109.47314 * 275.13437 * 3 2 1 5 5 H 1.48497 * 109.46953 * 35.13827 * 3 2 1 6 6 H 1.48504 * 109.46819 * 155.13423 * 3 2 1 7 7 C 1.38813 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99904 * 339.81792 * 7 2 1 9 9 N 1.36931 * 120.00321 * 159.82282 * 7 2 1 10 10 C 1.46499 * 119.99754 * 322.02167 * 9 7 2 11 11 C 1.52996 * 109.47317 * 269.99892 * 10 9 7 12 12 C 1.53006 * 109.47638 * 179.97438 * 11 10 9 13 13 N 1.46492 * 109.47265 * 180.02562 * 12 11 10 14 14 C 1.34776 * 119.99910 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99955 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00460 * 179.97438 * 14 13 12 17 17 C 1.52994 * 109.47464 * 182.81380 * 16 14 13 18 18 C 1.53004 * 115.55126 * 272.42446 * 17 16 14 19 19 F 1.39897 * 109.46918 * 61.38592 * 18 17 16 20 20 F 1.39899 * 109.46969 * 181.38711 * 18 17 16 21 21 F 1.39900 * 109.47086 * 301.38476 * 18 17 16 22 22 C 1.52999 * 117.49954 * 126.71493 * 17 16 14 23 23 C 1.52999 * 60.00088 * 252.51092 * 22 17 16 24 24 C 1.46505 * 120.00512 * 142.02130 * 9 7 2 25 25 C 1.53000 * 117.49198 * 3.87684 * 24 9 7 26 26 C 1.52997 * 117.49897 * 295.25597 * 24 9 7 27 27 H 0.96999 * 120.00394 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47026 * 30.00173 * 10 9 7 29 29 H 1.09002 * 109.47137 * 150.00058 * 10 9 7 30 30 H 1.08998 * 109.47303 * 300.00112 * 11 10 9 31 31 H 1.09002 * 109.46881 * 60.00010 * 11 10 9 32 32 H 1.08998 * 109.46921 * 300.00414 * 12 11 10 33 33 H 1.08996 * 109.46644 * 59.99762 * 12 11 10 34 34 H 0.96996 * 120.00120 * 0.02562 * 13 12 11 35 35 H 1.08995 * 109.46764 * 302.81864 * 16 14 13 36 36 H 1.09001 * 109.46950 * 62.81569 * 16 14 13 37 37 H 1.09005 * 117.50028 * 0.02562 * 22 17 16 38 38 H 1.08999 * 117.50331 * 145.02194 * 22 17 16 39 39 H 1.09000 * 117.50055 * 252.50683 * 23 22 17 40 40 H 1.08999 * 117.49746 * 107.48912 * 23 22 17 41 41 H 1.09001 * 115.55210 * 149.58070 * 24 9 7 42 42 H 1.08992 * 117.50581 * 359.97438 * 25 24 9 43 43 H 1.09003 * 117.49382 * 145.02110 * 25 24 9 44 44 H 1.08994 * 117.49775 * 214.97411 * 26 24 9 45 45 H 1.08997 * 117.49866 * 359.97327 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3892 2.1092 -1.3945 5 1 1.5061 2.6188 0.8058 6 1 3.5978 1.4113 0.5887 7 6 2.0103 -1.2021 -0.0005 8 1 1.5200 -2.1089 0.3217 9 7 3.3166 -1.2384 -0.4096 10 6 3.7556 -0.4073 -1.5333 11 6 3.5923 -1.1876 -2.8391 12 6 4.0502 -0.3195 -4.0129 13 7 3.8933 -1.0665 -5.2632 14 6 4.2363 -0.4974 -6.4358 15 8 4.6744 0.6334 -6.4558 16 6 4.0755 -1.2660 -7.7221 17 6 4.5989 -0.4247 -8.8878 18 6 3.5833 0.5272 -9.5229 19 9 3.1493 1.4516 -8.5667 20 9 4.1836 1.2059 -10.5889 21 9 2.4886 -0.2054 -9.9939 22 6 5.6406 -1.0637 -9.8083 23 6 6.0570 0.0351 -8.8284 24 6 4.2753 -2.1082 0.2765 25 6 3.7373 -3.0185 1.3823 26 6 4.5874 -1.7983 1.7419 27 1 -0.4851 0.8400 0.0004 28 1 3.1506 0.4986 -1.5733 29 1 4.8034 -0.1388 -1.3991 30 1 4.1972 -2.0935 -2.7991 31 1 2.5445 -1.4561 -2.9734 32 1 3.4449 0.5862 -4.0527 33 1 5.0979 -0.0506 -3.8788 34 1 3.5426 -1.9707 -5.2472 35 1 4.6407 -2.1960 -7.6626 36 1 3.0209 -1.4912 -7.8813 37 1 5.9528 -2.0836 -9.5837 38 1 5.6026 -0.8061 -10.8668 39 1 6.2929 1.0155 -9.2422 40 1 6.6433 -0.2618 -7.9589 41 1 5.0876 -2.4918 -0.3409 42 1 2.6704 -2.9699 1.5997 43 1 4.1957 -4.0013 1.4926 44 1 5.6049 -1.9783 2.0886 45 1 4.0799 -0.9469 2.1954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731333993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:13 Heat of formation + Delta-G solvation = -135.891058 kcal Electronic energy + Delta-G solvation = -29238.052390 eV Core-core repulsion = 24649.275148 eV Total energy + Delta-G solvation = -4588.777242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 14.04 seconds Orbital eigenvalues (eV) -51.11334 -48.67008 -48.57554 -40.94776 -39.12013 -38.44866 -36.61559 -35.24458 -33.77031 -31.91076 -30.33382 -27.78387 -26.83931 -25.38906 -23.56152 -23.19351 -22.67370 -22.16556 -21.41820 -21.07274 -19.43353 -19.31752 -18.53662 -18.44126 -17.85742 -17.44414 -17.14957 -16.62266 -16.54187 -15.88647 -15.61486 -15.50015 -15.35073 -15.10109 -15.05906 -14.78975 -14.75831 -14.70117 -14.61800 -14.43823 -14.10040 -13.98535 -13.82930 -13.18613 -12.75751 -12.68838 -12.58927 -12.47038 -12.44035 -12.40205 -12.05853 -11.77293 -11.71903 -11.49808 -11.43018 -11.24282 -10.97207 -10.76146 -10.63232 -10.05026 -8.64419 -8.22195 -5.60895 1.25869 1.37086 1.46448 1.66177 1.72047 2.03448 2.37105 2.48805 2.78424 2.93518 3.00311 3.18680 3.36553 3.38172 3.43621 3.73024 3.80303 4.06129 4.08105 4.22429 4.30894 4.37268 4.41898 4.47761 4.50645 4.53142 4.58152 4.67975 4.70204 4.72390 4.87658 4.94845 4.96363 5.04458 5.11803 5.24175 5.32373 5.39630 5.48992 5.55745 5.94126 6.19637 6.60035 6.98607 7.29777 7.62689 8.02374 8.96745 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.002531 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.765661 B =11062.209513 C =11793.058168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.016 4.016 3 Si 0.933 3.067 4 H -0.279 1.279 5 H -0.314 1.314 6 H -0.258 1.258 7 C -0.245 4.245 8 H 0.051 0.949 9 N -0.588 5.588 10 C 0.135 3.865 11 C -0.126 4.126 12 C 0.129 3.871 13 N -0.718 5.718 14 C 0.500 3.500 15 O -0.568 6.568 16 C -0.095 4.095 17 C -0.206 4.206 18 C 0.480 3.520 19 F -0.191 7.191 20 F -0.185 7.185 21 F -0.184 7.184 22 C -0.114 4.114 23 C -0.131 4.131 24 C 0.108 3.892 25 C -0.186 4.186 26 C -0.218 4.218 27 H 0.261 0.739 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.415 0.585 35 H 0.153 0.847 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.066 0.934 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.053 -7.332 -20.438 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.212 4.212 3 Si 0.763 3.237 4 H -0.206 1.206 5 H -0.243 1.243 6 H -0.182 1.182 7 C -0.375 4.375 8 H 0.069 0.931 9 N -0.308 5.308 10 C 0.010 3.990 11 C -0.166 4.166 12 C 0.004 3.996 13 N -0.371 5.371 14 C 0.287 3.713 15 O -0.447 6.447 16 C -0.134 4.134 17 C -0.208 4.208 18 C 0.426 3.574 19 F -0.172 7.172 20 F -0.167 7.167 21 F -0.165 7.165 22 C -0.151 4.151 23 C -0.168 4.168 24 C 0.001 3.999 25 C -0.224 4.224 26 C -0.259 4.259 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.252 0.748 35 H 0.171 0.829 36 H 0.133 0.867 37 H 0.163 0.837 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.085 0.915 43 H 0.133 0.867 44 H 0.129 0.871 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.190 -6.399 -20.464 26.276 hybrid contribution -1.159 1.326 0.496 1.829 sum 14.031 -5.073 -19.968 24.926 Atomic orbital electron populations 1.69942 1.07457 1.27175 1.54609 1.25995 0.95544 1.00618 0.99072 0.86023 0.79611 0.81024 0.77019 1.20628 1.24305 1.18162 1.18594 0.86430 0.92749 1.39685 0.93102 1.43793 1.05544 1.49139 1.32301 1.21141 0.98248 0.92785 0.86793 1.22088 1.01669 0.99558 0.93257 1.21136 1.00879 0.94443 0.83104 1.45941 1.66052 1.19402 1.05702 1.21156 0.77055 0.87016 0.86074 1.90727 1.46216 1.20094 1.87622 1.21219 1.05816 0.99143 0.87251 1.22118 0.91596 1.03719 1.03344 1.19846 0.81311 0.80289 0.75927 1.93222 1.90757 1.68748 1.64504 1.93136 1.83378 1.81819 1.58329 1.93165 1.57173 1.77048 1.89107 1.23509 0.94335 1.00338 0.96910 1.23012 0.90994 1.00427 1.02413 1.21539 0.94681 0.96357 0.87342 1.23042 0.99235 0.95107 1.05028 1.23360 1.00345 0.98964 1.03220 0.92983 0.95511 0.91176 0.89304 0.93001 0.94662 0.90999 0.74782 0.82908 0.86703 0.83719 0.86770 0.88624 0.87039 0.85093 0.91530 0.86743 0.87087 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.80 13.97 21.65 0.30 -58.50 16 2 C -0.02 -0.91 5.34 84.86 0.45 -0.46 16 3 Si 0.93 46.68 24.91 68.60 1.71 48.39 16 4 H -0.28 -13.54 6.69 99.48 0.67 -12.88 16 5 H -0.31 -16.18 7.11 99.48 0.71 -15.47 16 6 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.24 -13.24 9.01 84.03 0.76 -12.49 16 8 H 0.05 3.05 6.80 -2.91 -0.02 3.03 16 9 N -0.59 -25.75 2.42 -678.04 -1.64 -27.39 16 10 C 0.14 5.24 4.52 86.38 0.39 5.64 16 11 C -0.13 -3.92 5.65 30.59 0.17 -3.75 16 12 C 0.13 3.70 5.67 86.38 0.49 4.19 16 13 N -0.72 -15.91 5.56 -463.07 -2.57 -18.48 16 14 C 0.50 11.59 7.47 87.66 0.65 12.24 16 15 O -0.57 -18.03 13.98 -3.04 -0.04 -18.07 16 16 C -0.09 -1.32 5.66 29.85 0.17 -1.15 16 17 C -0.21 -3.33 1.35 -52.18 -0.07 -3.40 16 18 C 0.48 10.58 3.05 71.98 0.22 10.80 16 19 F -0.19 -5.63 15.99 44.97 0.72 -4.91 16 20 F -0.19 -3.99 15.89 44.97 0.71 -3.28 16 21 F -0.18 -3.91 16.90 44.97 0.76 -3.15 16 22 C -0.11 -1.00 9.61 30.59 0.29 -0.71 16 23 C -0.13 -1.98 8.38 30.59 0.26 -1.72 16 24 C 0.11 3.84 6.57 44.99 0.30 4.14 16 25 C -0.19 -6.48 9.80 30.59 0.30 -6.18 16 26 C -0.22 -7.57 10.35 30.59 0.32 -7.25 16 27 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.03 1.21 3.14 -2.39 -0.01 1.20 16 29 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.42 6.65 8.47 -92.71 -0.79 5.86 16 35 H 0.15 0.84 7.89 -2.39 -0.02 0.82 16 36 H 0.11 1.46 7.71 -2.39 -0.02 1.44 16 37 H 0.14 0.40 8.04 -2.38 -0.02 0.38 16 38 H 0.11 0.91 7.74 -2.39 -0.02 0.89 16 39 H 0.10 1.63 7.82 -2.39 -0.02 1.61 16 40 H 0.11 1.67 8.04 -2.39 -0.02 1.65 16 41 H 0.13 3.66 8.14 -2.39 -0.02 3.64 16 42 H 0.07 2.82 6.42 -2.39 -0.02 2.81 16 43 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 45 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -74.09 376.54 4.84 -69.25 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.19 Total: 16.24 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 4.70 Total: -0.10 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -3.91 Total: -104.36 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.04 Total: -18.07 kcal Atomic # 9 Polarization: -13.54 SS G_CDS: 2.19 Total: -11.34 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.71 Total: 48.39 kcal Total: -74.09 4.84 -69.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731333993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.643 kcal (2) G-P(sol) polarization free energy of solvation -74.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.04 seconds