Wall clock time and date at job start Tue Mar 31 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48500 * 109.47238 * 269.99762 * 3 2 1 5 5 H 1.48495 * 109.47303 * 29.99753 * 3 2 1 6 6 H 1.48500 * 109.47436 * 149.99784 * 3 2 1 7 7 C 1.38809 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99980 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.47015 * 125.64582 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.27065 * 178.91905 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09000 * 111.00346 * 277.43176 * 12 11 10 14 14 C 1.52996 * 111.00814 * 153.57356 * 12 11 10 15 15 N 1.46498 * 109.47077 * 174.99953 * 14 12 11 16 16 C 1.34782 * 119.99708 * 180.02562 * 15 14 12 17 17 O 1.21272 * 120.00170 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99816 * 179.97438 * 16 15 14 19 19 C 1.53007 * 110.43462 * 57.46315 * 18 16 15 20 20 F 1.39891 * 109.47237 * 60.69655 * 19 18 16 21 21 F 1.39900 * 109.47143 * 180.70179 * 19 18 16 22 22 F 1.39901 * 109.46487 * 300.69851 * 19 18 16 23 23 C 1.54885 * 110.49112 * 294.77684 * 18 16 15 24 24 C 1.54892 * 102.74657 * 279.26561 * 23 18 16 25 25 C 1.54262 * 104.19403 * 322.05192 * 24 23 18 26 26 C 1.53874 * 106.59779 * 23.61542 * 25 24 23 27 27 C 1.47425 * 125.64536 * 180.02562 * 9 7 2 28 28 H 0.97001 * 120.00208 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88350 * 59.50114 * 10 9 7 30 30 H 1.08997 * 110.01690 * 298.40630 * 10 9 7 31 31 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 32 32 H 1.08999 * 110.87305 * 96.24314 * 11 10 9 33 33 H 1.09001 * 109.47176 * 295.00435 * 14 12 11 34 34 H 1.09007 * 109.46573 * 55.00286 * 14 12 11 35 35 H 0.96996 * 120.00521 * 0.02562 * 15 14 12 36 36 H 1.09001 * 110.75566 * 37.57951 * 23 18 16 37 37 H 1.08999 * 110.76018 * 160.94753 * 23 18 16 38 38 H 1.09000 * 110.48514 * 203.37581 * 24 23 18 39 39 H 1.08996 * 110.48789 * 80.73817 * 24 23 18 40 40 H 1.08998 * 110.03561 * 264.32609 * 25 24 23 41 41 H 1.09006 * 110.02878 * 142.89619 * 25 24 23 42 42 H 1.09001 * 110.03079 * 240.70676 * 26 25 24 43 43 H 1.09003 * 110.03248 * 119.28797 * 26 25 24 44 44 H 1.08999 * 110.36633 * 85.32017 * 27 9 7 45 45 H 1.08996 * 110.37033 * 322.98397 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1375 -2.5327 0.0017 11 6 -0.4485 -4.0441 -0.0247 12 6 0.8518 -4.6563 -0.6093 13 1 0.8568 -4.5966 -1.6977 14 6 1.0369 -6.1008 -0.1406 15 7 2.2058 -6.6835 -0.8041 16 6 2.5637 -7.9566 -0.5434 17 8 1.9179 -8.6198 0.2400 18 6 3.7658 -8.5562 -1.2264 19 6 5.0155 -7.7216 -0.9384 20 9 5.2547 -7.7006 0.4398 21 9 6.1147 -8.2863 -1.5941 22 9 4.8193 -6.4148 -1.3977 23 6 3.5237 -8.6662 -2.7523 24 6 2.6763 -9.9572 -2.8717 25 6 3.2814 -10.9058 -1.8164 26 6 3.9741 -10.0151 -0.7703 27 6 1.9335 -3.7311 0.0028 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5576 -2.0523 -0.8819 30 1 -0.5567 -2.0838 0.9021 31 1 -1.2985 -4.2516 -0.6747 32 1 -0.6334 -4.4202 0.9815 33 1 1.1866 -6.1162 0.9390 34 1 0.1492 -6.6811 -0.3926 35 1 2.7222 -6.1533 -1.4310 36 1 2.9671 -7.8034 -3.1182 37 1 4.4678 -8.7730 -3.2865 38 1 2.7721 -10.3855 -3.8694 39 1 1.6308 -9.7497 -2.6435 40 1 4.0098 -11.5684 -2.2838 41 1 2.4922 -11.4913 -1.3445 42 1 5.0387 -10.2454 -0.7300 43 1 3.5212 -10.1684 0.2093 44 1 2.1659 -4.0414 1.0215 45 1 2.8332 -3.7408 -0.6124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731862318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:53 Heat of formation + Delta-G solvation = -177.710776 kcal Electronic energy + Delta-G solvation = -30727.316901 eV Core-core repulsion = 26136.726220 eV Total energy + Delta-G solvation = -4590.590681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 5.14 seconds Orbital eigenvalues (eV) -50.43956 -47.93883 -47.85896 -40.61965 -38.07194 -37.20889 -34.82913 -32.60971 -31.16176 -29.77117 -29.23109 -28.21912 -25.65215 -25.08870 -23.91094 -22.34844 -21.02838 -20.49335 -20.01579 -19.69997 -18.78477 -18.46350 -18.25932 -16.88154 -16.72030 -16.15616 -15.76963 -15.08678 -14.95830 -14.71898 -14.65801 -14.54532 -14.36266 -14.19837 -14.04069 -13.92610 -13.75422 -13.65132 -13.40152 -13.06609 -12.36812 -12.15805 -12.00700 -11.86718 -11.75974 -11.69689 -11.58691 -11.51216 -11.40252 -10.90966 -10.84136 -10.79648 -10.45970 -10.19800 -10.06548 -9.92112 -9.82540 -9.65788 -9.12053 -8.60182 -6.83461 -5.71318 -3.04800 1.97557 2.61260 2.81271 3.37844 3.40129 3.45336 3.47278 3.48864 3.75100 4.12656 4.20606 4.41648 4.49674 4.68367 4.84062 4.89445 4.97258 5.05770 5.17903 5.18850 5.31418 5.39691 5.49133 5.52939 5.53542 5.65317 5.72441 5.73847 5.85661 5.95013 5.97939 6.01812 6.28354 6.33205 6.49443 6.50983 6.66022 6.88994 7.31408 7.56090 7.61948 7.82459 7.95217 8.25903 9.22290 9.82511 10.48373 11.40481 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.003073 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.760953 B = 9110.909970 C = 9986.369743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.131 3.869 15 N -0.717 5.717 16 C 0.528 3.472 17 O -0.518 6.518 18 C -0.137 4.137 19 C 0.466 3.534 20 F -0.173 7.173 21 F -0.175 7.175 22 F -0.174 7.174 23 C -0.112 4.112 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.107 4.107 27 C 0.142 3.858 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.405 0.595 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.019 0.981 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.830 -22.218 -6.329 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.370 5.370 16 C 0.311 3.689 17 O -0.394 6.394 18 C -0.142 4.142 19 C 0.411 3.589 20 F -0.155 7.155 21 F -0.156 7.156 22 F -0.155 7.155 23 C -0.150 4.150 24 C -0.159 4.159 25 C -0.155 4.155 26 C -0.145 4.145 27 C 0.015 3.985 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.242 0.758 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.037 0.963 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.322 -22.407 -5.728 23.976 hybrid contribution 0.990 1.469 -0.218 1.785 sum 7.312 -20.938 -5.946 22.962 Atomic orbital electron populations 1.69961 1.04874 1.25013 1.57137 1.24799 0.95729 0.97670 1.02271 0.86117 0.78610 0.83483 0.77553 1.21609 1.21672 1.20693 1.19066 0.90445 0.82431 1.43744 0.90473 1.44473 1.01713 0.99854 1.87183 1.21139 0.84337 0.88091 1.01160 1.22858 0.95282 0.99451 0.99700 1.22631 0.98804 0.91818 1.00570 0.90148 1.21501 0.86754 0.93422 0.97491 1.46241 1.31606 1.12621 1.46483 1.19456 0.85153 0.82263 0.82021 1.90704 1.53699 1.60527 1.34449 1.23118 0.91021 0.98557 1.01491 1.20078 0.85305 0.78788 0.74710 1.93236 1.95156 1.96381 1.30687 1.93179 1.56612 1.84719 1.81076 1.93173 1.94735 1.38891 1.88739 1.22687 1.02580 1.00441 0.89296 1.22349 0.99597 0.94119 0.99789 1.22070 1.00092 0.97733 0.95597 1.22184 1.02199 0.88208 1.01876 1.21593 0.93966 0.86143 0.96784 0.93770 0.93535 0.93874 0.91952 0.92162 0.90979 0.91258 0.75810 0.89552 0.88858 0.90320 0.90865 0.91061 0.90755 0.90138 0.88367 0.96288 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.11 10.31 55.49 0.57 -26.54 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.61 -15.45 3.39 -170.06 -0.58 -16.03 16 10 C 0.18 4.26 5.37 -3.07 -0.02 4.25 16 11 C -0.13 -2.40 6.42 -24.90 -0.16 -2.56 16 12 C -0.12 -1.94 3.05 -88.46 -0.27 -2.21 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.13 1.85 5.13 -4.04 -0.02 1.83 16 15 N -0.72 -9.16 5.06 -60.29 -0.31 -9.47 16 16 C 0.53 6.78 6.09 -10.98 -0.07 6.72 16 17 O -0.52 -8.06 15.44 5.56 0.09 -7.97 16 18 C -0.14 -1.38 0.33 -154.00 -0.05 -1.43 16 19 C 0.47 5.14 2.23 37.16 0.08 5.23 16 20 F -0.17 -2.22 16.88 2.25 0.04 -2.18 16 21 F -0.17 -1.76 15.79 2.25 0.04 -1.73 16 22 F -0.17 -2.05 14.86 2.25 0.03 -2.02 16 23 C -0.11 -0.87 5.62 -24.74 -0.14 -1.00 16 24 C -0.12 -0.85 6.61 -25.07 -0.17 -1.02 16 25 C -0.12 -0.84 6.80 -25.62 -0.17 -1.01 16 26 C -0.11 -0.96 5.48 -25.62 -0.14 -1.10 16 27 C 0.14 2.88 6.65 -2.51 -0.02 2.86 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 30 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 33 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.40 4.82 6.41 -40.82 -0.26 4.56 16 36 H 0.09 0.64 7.81 -51.93 -0.41 0.24 16 37 H 0.09 0.61 7.43 -51.93 -0.39 0.22 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.63 7.29 -51.93 -0.38 0.25 16 43 H 0.10 1.04 6.89 -51.93 -0.36 0.68 16 44 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -31.58 364.05 -7.77 -39.35 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.73 Total: 0.28 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.39 Total: 3.64 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.31 Total: -52.04 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.58 -7.77 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731862318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.358 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.14 seconds