Wall clock time and date at job start Tue Mar 31 2020 22:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48500 * 109.47238 * 269.99762 * 3 2 1 5 5 H 1.48495 * 109.47303 * 29.99753 * 3 2 1 6 6 H 1.48500 * 109.47436 * 149.99784 * 3 2 1 7 7 C 1.38809 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99980 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.47015 * 125.64582 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.27065 * 178.91905 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09000 * 111.00346 * 277.43176 * 12 11 10 14 14 C 1.52996 * 111.00814 * 153.57356 * 12 11 10 15 15 N 1.46498 * 109.47077 * 174.99953 * 14 12 11 16 16 C 1.34782 * 119.99708 * 180.02562 * 15 14 12 17 17 O 1.21272 * 120.00170 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99816 * 179.97438 * 16 15 14 19 19 C 1.53007 * 110.43462 * 57.46315 * 18 16 15 20 20 F 1.39891 * 109.47237 * 60.69655 * 19 18 16 21 21 F 1.39900 * 109.47143 * 180.70179 * 19 18 16 22 22 F 1.39901 * 109.46487 * 300.69851 * 19 18 16 23 23 C 1.54885 * 110.49112 * 294.77684 * 18 16 15 24 24 C 1.54892 * 102.74657 * 279.26561 * 23 18 16 25 25 C 1.54262 * 104.19403 * 322.05192 * 24 23 18 26 26 C 1.53874 * 106.59779 * 23.61542 * 25 24 23 27 27 C 1.47425 * 125.64536 * 180.02562 * 9 7 2 28 28 H 0.97001 * 120.00208 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88350 * 59.50114 * 10 9 7 30 30 H 1.08997 * 110.01690 * 298.40630 * 10 9 7 31 31 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 32 32 H 1.08999 * 110.87305 * 96.24314 * 11 10 9 33 33 H 1.09001 * 109.47176 * 295.00435 * 14 12 11 34 34 H 1.09007 * 109.46573 * 55.00286 * 14 12 11 35 35 H 0.96996 * 120.00521 * 0.02562 * 15 14 12 36 36 H 1.09001 * 110.75566 * 37.57951 * 23 18 16 37 37 H 1.08999 * 110.76018 * 160.94753 * 23 18 16 38 38 H 1.09000 * 110.48514 * 203.37581 * 24 23 18 39 39 H 1.08996 * 110.48789 * 80.73817 * 24 23 18 40 40 H 1.08998 * 110.03561 * 264.32609 * 25 24 23 41 41 H 1.09006 * 110.02878 * 142.89619 * 25 24 23 42 42 H 1.09001 * 110.03079 * 240.70676 * 26 25 24 43 43 H 1.09003 * 110.03248 * 119.28797 * 26 25 24 44 44 H 1.08999 * 110.36633 * 85.32017 * 27 9 7 45 45 H 1.08996 * 110.37033 * 322.98397 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1375 -2.5327 0.0017 11 6 -0.4485 -4.0441 -0.0247 12 6 0.8518 -4.6563 -0.6093 13 1 0.8568 -4.5966 -1.6977 14 6 1.0369 -6.1008 -0.1406 15 7 2.2058 -6.6835 -0.8041 16 6 2.5637 -7.9566 -0.5434 17 8 1.9179 -8.6198 0.2400 18 6 3.7658 -8.5562 -1.2264 19 6 5.0155 -7.7216 -0.9384 20 9 5.2547 -7.7006 0.4398 21 9 6.1147 -8.2863 -1.5941 22 9 4.8193 -6.4148 -1.3977 23 6 3.5237 -8.6662 -2.7523 24 6 2.6763 -9.9572 -2.8717 25 6 3.2814 -10.9058 -1.8164 26 6 3.9741 -10.0151 -0.7703 27 6 1.9335 -3.7311 0.0028 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5576 -2.0523 -0.8819 30 1 -0.5567 -2.0838 0.9021 31 1 -1.2985 -4.2516 -0.6747 32 1 -0.6334 -4.4202 0.9815 33 1 1.1866 -6.1162 0.9390 34 1 0.1492 -6.6811 -0.3926 35 1 2.7222 -6.1533 -1.4310 36 1 2.9671 -7.8034 -3.1182 37 1 4.4678 -8.7730 -3.2865 38 1 2.7721 -10.3855 -3.8694 39 1 1.6308 -9.7497 -2.6435 40 1 4.0098 -11.5684 -2.2838 41 1 2.4922 -11.4913 -1.3445 42 1 5.0387 -10.2454 -0.7300 43 1 3.5212 -10.1684 0.2093 44 1 2.1659 -4.0414 1.0215 45 1 2.8332 -3.7408 -0.6124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731862318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:26 Heat of formation + Delta-G solvation = -196.443120 kcal Electronic energy + Delta-G solvation = -30728.129197 eV Core-core repulsion = 26136.726220 eV Total energy + Delta-G solvation = -4591.402976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 26.44 seconds Orbital eigenvalues (eV) -51.32747 -48.82072 -48.76858 -41.56700 -39.49054 -38.21276 -36.16773 -34.39700 -32.17762 -31.34956 -30.05679 -29.63573 -27.34941 -25.95816 -25.43847 -23.38174 -22.01270 -21.60200 -21.57662 -20.83567 -19.73800 -19.34130 -19.20097 -18.75652 -17.67478 -17.27072 -16.86731 -16.61652 -16.04517 -15.98862 -15.65318 -15.54783 -15.53498 -15.24450 -15.13200 -14.93338 -14.80552 -14.61236 -14.40298 -14.27840 -13.97235 -13.83591 -13.45785 -13.06255 -12.83041 -12.74450 -12.64588 -12.52083 -12.41114 -12.16878 -12.13124 -12.03522 -11.92632 -11.87137 -11.57700 -11.48270 -11.37961 -11.05087 -10.71123 -10.22572 -8.90759 -7.85881 -5.21464 1.04114 1.45208 1.47000 1.55709 1.70305 1.83654 2.48744 2.55739 2.67283 2.88991 3.32113 3.40869 3.42885 3.53214 3.59184 3.79895 3.99164 4.01869 4.10389 4.21190 4.29956 4.37867 4.41737 4.60580 4.62355 4.66611 4.73701 4.76793 4.88357 4.93051 4.96426 5.02167 5.07100 5.15057 5.20569 5.23559 5.39740 5.41625 5.44621 5.67608 5.77764 6.19576 6.28980 6.93958 7.10109 7.77241 8.41333 9.24438 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.003073 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.760953 B = 9110.909970 C = 9986.369743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.978 3.022 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.121 4.121 12 C -0.096 4.096 13 H 0.092 0.908 14 C 0.142 3.858 15 N -0.715 5.715 16 C 0.528 3.472 17 O -0.547 6.547 18 C -0.133 4.133 19 C 0.464 3.536 20 F -0.187 7.187 21 F -0.167 7.167 22 F -0.179 7.179 23 C -0.111 4.111 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.109 4.109 27 C 0.137 3.863 28 H 0.247 0.753 29 H 0.014 0.986 30 H 0.004 0.996 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.410 0.590 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.016 0.984 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.878 -23.889 -7.769 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.159 4.159 12 C -0.116 4.116 13 H 0.110 0.890 14 C 0.019 3.981 15 N -0.368 5.368 16 C 0.313 3.687 17 O -0.425 6.425 18 C -0.138 4.138 19 C 0.410 3.590 20 F -0.168 7.168 21 F -0.148 7.148 22 F -0.161 7.161 23 C -0.148 4.148 24 C -0.156 4.156 25 C -0.152 4.152 26 C -0.146 4.146 27 C 0.012 3.988 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.022 0.978 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.248 0.752 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.033 0.967 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.400 -24.106 -7.179 26.218 hybrid contribution 0.710 1.972 0.267 2.112 sum 8.110 -22.135 -6.913 24.566 Atomic orbital electron populations 1.70184 1.06246 1.25264 1.58232 1.25646 0.96641 1.00997 1.02590 0.85086 0.77588 0.79128 0.77583 1.21016 1.22092 1.19567 1.19455 0.90968 0.83849 1.43079 0.90175 1.44799 1.02595 1.01092 1.87006 1.20925 0.83629 0.91929 0.97755 1.22716 0.96998 0.94841 1.01380 1.22437 0.96045 0.92247 1.00861 0.88975 1.21278 0.88010 0.91959 0.96868 1.46191 1.31322 1.12830 1.46434 1.19856 0.85566 0.81841 0.81478 1.90694 1.54934 1.61174 1.35683 1.23150 0.89045 0.98557 1.03058 1.20237 0.85939 0.78716 0.74129 1.93212 1.95296 1.96434 1.31889 1.93192 1.56268 1.84526 1.80789 1.93160 1.94792 1.39414 1.88713 1.22806 1.03686 1.01034 0.87282 1.22362 0.98580 0.93750 1.00928 1.22091 1.00362 0.97646 0.95142 1.22236 1.03025 0.87864 1.01503 1.21759 0.95346 0.84733 0.96983 0.94395 0.96755 0.97778 0.89236 0.90975 0.92055 0.89632 0.75171 0.89187 0.87132 0.88034 0.92198 0.88902 0.91260 0.88939 0.90388 0.96670 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.58 10.31 21.65 0.22 -57.36 16 2 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 3 Si 0.98 46.17 29.55 68.60 2.03 48.19 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.24 -13.88 10.28 84.03 0.86 -13.02 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 9 N -0.63 -32.48 3.39 -691.95 -2.35 -34.83 16 10 C 0.18 8.98 5.37 86.73 0.47 9.45 16 11 C -0.12 -4.18 6.42 31.78 0.20 -3.97 16 12 C -0.10 -2.99 3.05 -9.39 -0.03 -3.02 16 13 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 14 C 0.14 3.73 5.13 86.38 0.44 4.17 16 15 N -0.72 -17.03 5.06 -463.06 -2.34 -19.37 16 16 C 0.53 12.85 6.09 87.66 0.53 13.39 16 17 O -0.55 -16.56 15.44 -3.01 -0.05 -16.61 16 18 C -0.13 -2.45 0.33 -51.85 -0.02 -2.47 16 19 C 0.46 9.53 2.23 71.98 0.16 9.69 16 20 F -0.19 -4.63 16.88 44.97 0.76 -3.88 16 21 F -0.17 -3.00 15.79 44.97 0.71 -2.29 16 22 F -0.18 -3.95 14.86 44.97 0.67 -3.28 16 23 C -0.11 -1.40 5.62 31.88 0.18 -1.22 16 24 C -0.12 -1.34 6.61 31.67 0.21 -1.13 16 25 C -0.11 -1.37 6.80 31.32 0.21 -1.15 16 26 C -0.11 -1.77 5.48 31.32 0.17 -1.60 16 27 C 0.14 5.49 6.65 86.87 0.58 6.06 16 28 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.01 0.78 7.38 -2.39 -0.02 0.76 16 30 H 0.00 0.22 7.51 -2.39 -0.02 0.20 16 31 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 33 H 0.06 1.78 7.96 -2.39 -0.02 1.76 16 34 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.41 8.96 6.41 -92.71 -0.59 8.37 16 36 H 0.09 1.09 7.81 -2.39 -0.02 1.07 16 37 H 0.11 1.05 7.43 -2.39 -0.02 1.04 16 38 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.90 8.14 -2.38 -0.02 0.89 16 42 H 0.09 1.26 7.29 -2.39 -0.02 1.24 16 43 H 0.08 1.61 6.89 -2.39 -0.02 1.59 16 44 H 0.02 0.64 7.91 -2.39 -0.02 0.62 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -69.99 364.05 4.50 -65.49 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.41 Total: 12.07 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 4.44 Total: 11.87 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -4.47 Total: -111.56 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.05 Total: -16.61 kcal Atomic # 9 Polarization: -11.58 SS G_CDS: 2.14 Total: -9.45 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -69.99 4.50 -65.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731862318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.954 kcal (2) G-P(sol) polarization free energy of solvation -69.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.44 seconds