Wall clock time and date at job start Tue Mar 31 2020 22:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86809 * 120.00523 * 2 1 4 4 H 1.48496 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46647 * 300.00165 * 3 2 1 6 6 H 1.48494 * 109.46757 * 59.99664 * 3 2 1 7 7 C 1.38817 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.64477 * 359.95985 * 9 7 2 11 11 C 1.54323 * 107.26646 * 181.09348 * 10 9 7 12 12 C 1.55157 * 102.94411 * 22.19406 * 11 10 9 13 13 H 1.08997 * 111.03764 * 82.58576 * 12 11 10 14 14 C 1.52998 * 111.00605 * 206.42135 * 12 11 10 15 15 N 1.46493 * 109.47621 * 178.64986 * 14 12 11 16 16 C 1.34775 * 120.00645 * 179.97438 * 15 14 12 17 17 O 1.21282 * 119.99652 * 0.02562 * 16 15 14 18 18 C 1.50693 * 120.00583 * 179.97438 * 16 15 14 19 19 C 1.53007 * 110.05264 * 58.58396 * 18 16 15 20 20 F 1.39899 * 109.47334 * 181.41518 * 19 18 16 21 21 F 1.39901 * 109.47183 * 301.42055 * 19 18 16 22 22 F 1.39905 * 109.46502 * 61.41972 * 19 18 16 23 23 C 1.53869 * 110.03789 * 180.02562 * 18 16 15 24 24 C 1.54266 * 106.60031 * 119.28673 * 23 18 16 25 25 C 1.54894 * 104.31305 * 336.32486 * 24 23 18 26 26 C 1.54266 * 110.03451 * 297.17247 * 18 16 15 27 27 C 1.47423 * 125.64815 * 180.02562 * 9 7 2 28 28 H 0.97003 * 119.99936 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.87903 * 300.50903 * 10 9 7 30 30 H 1.08996 * 109.87919 * 61.52243 * 10 9 7 31 31 H 1.09000 * 110.72177 * 263.83046 * 11 10 9 32 32 H 1.09001 * 110.72024 * 140.55459 * 11 10 9 33 33 H 1.09004 * 109.47135 * 58.64890 * 14 12 11 34 34 H 1.09003 * 109.47137 * 298.65211 * 14 12 11 35 35 H 0.97001 * 119.99727 * 359.97438 * 15 14 12 36 36 H 1.09001 * 110.02983 * 0.02562 * 23 18 16 37 37 H 1.08995 * 110.03881 * 238.57617 * 23 18 16 38 38 H 1.09002 * 110.48629 * 95.07240 * 24 23 18 39 39 H 1.08998 * 110.48744 * 217.58143 * 24 23 18 40 40 H 1.08996 * 110.75388 * 156.31523 * 25 24 23 41 41 H 1.08993 * 110.76071 * 279.69749 * 25 24 23 42 42 H 1.09005 * 110.48526 * 23.00238 * 26 18 16 43 43 H 1.09006 * 110.48581 * 145.64431 * 26 18 16 44 44 H 1.08996 * 110.36879 * 36.99118 * 27 9 7 45 45 H 1.09006 * 110.45784 * 274.71871 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1377 -2.5327 0.0008 11 6 -0.4486 -4.0440 0.0284 12 6 0.8523 -4.6559 0.6121 13 1 0.8587 -4.5962 1.7004 14 6 1.0369 -6.1008 0.1440 15 7 2.2884 -6.6341 0.6873 16 6 2.6608 -7.8984 0.4058 17 8 1.9598 -8.5946 -0.2976 18 6 3.9485 -8.4468 0.9642 19 6 3.9276 -8.3813 2.4927 20 9 5.1405 -8.8630 2.9968 21 9 3.7469 -7.0552 2.9003 22 9 2.8762 -9.1660 2.9786 23 6 4.1471 -9.9007 0.5011 24 6 5.4586 -9.9294 -0.3106 25 6 5.6383 -8.4707 -0.7997 26 6 5.1463 -7.6431 0.4173 27 6 1.9333 -3.7312 -0.0005 28 1 -0.4850 0.8401 0.0004 29 1 -0.5568 -2.0518 0.8846 30 1 -0.5555 -2.0823 -0.8995 31 1 -0.6327 -4.4183 -0.9786 32 1 -1.2980 -4.2512 0.6793 33 1 1.0727 -6.1281 -0.9451 34 1 0.2012 -6.7061 0.4953 35 1 2.8493 -6.0771 1.2496 36 1 3.3122 -10.2095 -0.1279 37 1 4.2283 -10.5600 1.3652 38 1 6.2940 -10.2244 0.3244 39 1 5.3674 -10.6077 -1.1589 40 1 6.6862 -8.2615 -1.0142 41 1 5.0176 -8.2774 -1.6746 42 1 4.8265 -6.6509 0.0989 43 1 5.9314 -7.5687 1.1699 44 1 2.8332 -3.7403 0.6143 45 1 2.1669 -4.0437 -1.0184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731862319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:19 Heat of formation + Delta-G solvation = -177.611482 kcal Electronic energy + Delta-G solvation = -30680.751447 eV Core-core repulsion = 26090.165072 eV Total energy + Delta-G solvation = -4590.586375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -50.49337 -47.97260 -47.91301 -40.60333 -38.08372 -37.25155 -34.84627 -32.62797 -31.16703 -29.78157 -29.19324 -28.20988 -25.68876 -25.10439 -23.84406 -22.26314 -21.19422 -20.47617 -20.00386 -19.72327 -18.83680 -18.54655 -18.21834 -16.90242 -16.72243 -16.22347 -15.51926 -15.37364 -14.86296 -14.72974 -14.70000 -14.56032 -14.34698 -14.26244 -14.12494 -14.00366 -13.75030 -13.62869 -13.30720 -13.10777 -12.39350 -12.21313 -12.06855 -11.82144 -11.71283 -11.60209 -11.54091 -11.43548 -11.40449 -10.96116 -10.91854 -10.83056 -10.48979 -10.19404 -10.04770 -9.92864 -9.84581 -9.68472 -9.13113 -8.62403 -6.85721 -5.73454 -3.07122 1.95593 2.58914 2.80057 3.36708 3.38219 3.43560 3.46169 3.49599 3.73826 4.13953 4.18992 4.43026 4.47920 4.71198 4.83718 4.92200 5.03096 5.04991 5.19031 5.22823 5.36521 5.38386 5.51019 5.51344 5.60399 5.64499 5.70432 5.74369 5.84272 5.95622 5.99306 6.01506 6.29198 6.30030 6.45618 6.49935 6.63125 6.86629 7.30677 7.54138 7.60913 7.80943 7.93933 8.23792 9.19871 9.80275 10.46077 11.38328 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.002970 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.085936 B = 9424.192179 C = 9750.581150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.120 4.120 13 H 0.081 0.919 14 C 0.132 3.868 15 N -0.716 5.716 16 C 0.525 3.475 17 O -0.519 6.519 18 C -0.132 4.132 19 C 0.465 3.535 20 F -0.173 7.173 21 F -0.175 7.175 22 F -0.175 7.175 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.117 4.117 27 C 0.142 3.858 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.406 0.594 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.035 0.965 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.666 -20.615 2.593 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.368 5.368 16 C 0.308 3.692 17 O -0.395 6.395 18 C -0.137 4.137 19 C 0.410 3.590 20 F -0.154 7.154 21 F -0.157 7.157 22 F -0.156 7.156 23 C -0.151 4.151 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.154 4.154 27 C 0.016 3.984 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.243 0.757 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.053 0.947 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.083 -20.848 2.124 22.840 hybrid contribution 0.628 1.288 0.714 1.601 sum 9.711 -19.560 2.837 22.021 Atomic orbital electron populations 1.69971 1.04891 1.24932 1.57062 1.24808 0.95724 0.97691 1.02215 0.86049 0.78704 0.83776 0.77258 1.20511 1.21741 1.21740 1.19100 0.90445 0.82413 1.43812 0.90418 1.44477 1.01738 0.99821 1.87168 1.21155 0.84306 0.88136 1.01192 1.22856 0.95336 0.99400 0.99680 1.22633 0.98808 0.91789 1.00705 0.90097 1.21497 0.84638 0.94073 0.98948 1.46224 1.25215 1.13209 1.52190 1.19544 0.85588 0.82358 0.81670 1.90693 1.53095 1.58074 1.37644 1.22886 0.98767 1.02663 0.89419 1.20162 0.73932 0.73876 0.91024 1.93187 1.45063 1.88083 1.89109 1.93165 1.95017 1.35428 1.92068 1.93226 1.57822 1.74710 1.89874 1.22277 1.00935 0.90157 1.01699 1.22364 0.96517 0.97226 0.99723 1.22537 1.01946 0.94194 0.97062 1.22622 0.94333 0.99084 0.99391 1.21553 0.93942 0.86244 0.96679 0.93789 0.93537 0.93805 0.92149 0.91897 0.90934 0.91314 0.75721 0.87474 0.90446 0.90994 0.90548 0.90171 0.90568 0.89307 0.89141 0.94714 0.96309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.31 55.49 0.57 -26.32 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.61 -15.20 3.39 -170.09 -0.58 -15.77 16 10 C 0.18 4.22 5.38 -3.06 -0.02 4.20 16 11 C -0.13 -2.40 6.42 -24.90 -0.16 -2.56 16 12 C -0.12 -1.96 3.10 -88.48 -0.27 -2.23 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 14 C 0.13 1.85 5.12 -4.05 -0.02 1.83 16 15 N -0.72 -9.21 4.80 -60.30 -0.29 -9.50 16 16 C 0.53 6.80 6.22 -10.99 -0.07 6.73 16 17 O -0.52 -8.12 15.21 5.56 0.08 -8.03 16 18 C -0.13 -1.35 0.38 -154.54 -0.06 -1.41 16 19 C 0.46 4.96 2.04 37.16 0.08 5.03 16 20 F -0.17 -1.71 16.07 2.25 0.04 -1.68 16 21 F -0.18 -1.97 14.82 2.25 0.03 -1.93 16 22 F -0.18 -2.08 16.66 2.25 0.04 -2.05 16 23 C -0.11 -1.03 5.69 -25.62 -0.15 -1.17 16 24 C -0.12 -0.85 6.82 -25.07 -0.17 -1.02 16 25 C -0.12 -0.89 6.93 -24.58 -0.17 -1.07 16 26 C -0.12 -0.99 5.63 -24.91 -0.14 -1.13 16 27 C 0.14 2.79 6.41 -2.54 -0.02 2.78 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 30 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 31 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.41 4.89 6.31 -40.82 -0.26 4.63 16 36 H 0.11 1.14 6.39 -51.93 -0.33 0.81 16 37 H 0.08 0.65 7.32 -51.93 -0.38 0.27 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.79 7.50 -51.93 -0.39 0.40 16 43 H 0.09 0.67 7.25 -51.93 -0.38 0.29 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -31.07 363.10 -7.76 -38.83 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.69 Total: 0.90 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.42 Total: 3.18 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.29 Total: -51.60 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.08 Total: -8.03 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.11 Total: -5.66 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.07 -7.76 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731862319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.779 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds