Wall clock time and date at job start Tue Mar 31 2020 22:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86809 * 120.00523 * 2 1 4 4 H 1.48496 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46647 * 300.00165 * 3 2 1 6 6 H 1.48494 * 109.46757 * 59.99664 * 3 2 1 7 7 C 1.38817 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.64477 * 359.95985 * 9 7 2 11 11 C 1.54323 * 107.26646 * 181.09348 * 10 9 7 12 12 C 1.55157 * 102.94411 * 22.19406 * 11 10 9 13 13 H 1.08997 * 111.03764 * 82.58576 * 12 11 10 14 14 C 1.52998 * 111.00605 * 206.42135 * 12 11 10 15 15 N 1.46493 * 109.47621 * 178.64986 * 14 12 11 16 16 C 1.34775 * 120.00645 * 179.97438 * 15 14 12 17 17 O 1.21282 * 119.99652 * 0.02562 * 16 15 14 18 18 C 1.50693 * 120.00583 * 179.97438 * 16 15 14 19 19 C 1.53007 * 110.05264 * 58.58396 * 18 16 15 20 20 F 1.39899 * 109.47334 * 181.41518 * 19 18 16 21 21 F 1.39901 * 109.47183 * 301.42055 * 19 18 16 22 22 F 1.39905 * 109.46502 * 61.41972 * 19 18 16 23 23 C 1.53869 * 110.03789 * 180.02562 * 18 16 15 24 24 C 1.54266 * 106.60031 * 119.28673 * 23 18 16 25 25 C 1.54894 * 104.31305 * 336.32486 * 24 23 18 26 26 C 1.54266 * 110.03451 * 297.17247 * 18 16 15 27 27 C 1.47423 * 125.64815 * 180.02562 * 9 7 2 28 28 H 0.97003 * 119.99936 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.87903 * 300.50903 * 10 9 7 30 30 H 1.08996 * 109.87919 * 61.52243 * 10 9 7 31 31 H 1.09000 * 110.72177 * 263.83046 * 11 10 9 32 32 H 1.09001 * 110.72024 * 140.55459 * 11 10 9 33 33 H 1.09004 * 109.47135 * 58.64890 * 14 12 11 34 34 H 1.09003 * 109.47137 * 298.65211 * 14 12 11 35 35 H 0.97001 * 119.99727 * 359.97438 * 15 14 12 36 36 H 1.09001 * 110.02983 * 0.02562 * 23 18 16 37 37 H 1.08995 * 110.03881 * 238.57617 * 23 18 16 38 38 H 1.09002 * 110.48629 * 95.07240 * 24 23 18 39 39 H 1.08998 * 110.48744 * 217.58143 * 24 23 18 40 40 H 1.08996 * 110.75388 * 156.31523 * 25 24 23 41 41 H 1.08993 * 110.76071 * 279.69749 * 25 24 23 42 42 H 1.09005 * 110.48526 * 23.00238 * 26 18 16 43 43 H 1.09006 * 110.48581 * 145.64431 * 26 18 16 44 44 H 1.08996 * 110.36879 * 36.99118 * 27 9 7 45 45 H 1.09006 * 110.45784 * 274.71871 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1377 -2.5327 0.0008 11 6 -0.4486 -4.0440 0.0284 12 6 0.8523 -4.6559 0.6121 13 1 0.8587 -4.5962 1.7004 14 6 1.0369 -6.1008 0.1440 15 7 2.2884 -6.6341 0.6873 16 6 2.6608 -7.8984 0.4058 17 8 1.9598 -8.5946 -0.2976 18 6 3.9485 -8.4468 0.9642 19 6 3.9276 -8.3813 2.4927 20 9 5.1405 -8.8630 2.9968 21 9 3.7469 -7.0552 2.9003 22 9 2.8762 -9.1660 2.9786 23 6 4.1471 -9.9007 0.5011 24 6 5.4586 -9.9294 -0.3106 25 6 5.6383 -8.4707 -0.7997 26 6 5.1463 -7.6431 0.4173 27 6 1.9333 -3.7312 -0.0005 28 1 -0.4850 0.8401 0.0004 29 1 -0.5568 -2.0518 0.8846 30 1 -0.5555 -2.0823 -0.8995 31 1 -0.6327 -4.4183 -0.9786 32 1 -1.2980 -4.2512 0.6793 33 1 1.0727 -6.1281 -0.9451 34 1 0.2012 -6.7061 0.4953 35 1 2.8493 -6.0771 1.2496 36 1 3.3122 -10.2095 -0.1279 37 1 4.2283 -10.5600 1.3652 38 1 6.2940 -10.2244 0.3244 39 1 5.3674 -10.6077 -1.1589 40 1 6.6862 -8.2615 -1.0142 41 1 5.0176 -8.2774 -1.6746 42 1 4.8265 -6.6509 0.0989 43 1 5.9314 -7.5687 1.1699 44 1 2.8332 -3.7403 0.6143 45 1 2.1669 -4.0437 -1.0184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731862319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:09 Heat of formation + Delta-G solvation = -195.610255 kcal Electronic energy + Delta-G solvation = -30681.531932 eV Core-core repulsion = 26090.165072 eV Total energy + Delta-G solvation = -4591.366861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 9.94 seconds Orbital eigenvalues (eV) -51.34245 -48.82634 -48.76436 -41.56984 -39.48902 -38.25829 -36.18488 -34.39079 -32.19527 -31.34411 -30.04450 -29.61835 -27.34510 -26.00696 -25.35720 -23.28637 -22.03128 -21.75262 -21.51600 -20.84966 -19.77826 -19.38510 -19.16251 -18.73334 -17.64855 -17.34609 -16.82385 -16.54543 -16.28866 -15.80252 -15.65762 -15.54565 -15.51952 -15.24148 -15.15763 -14.96439 -14.84674 -14.62860 -14.42652 -14.11449 -13.98579 -13.82815 -13.45357 -13.09050 -12.91706 -12.77458 -12.66083 -12.49992 -12.26803 -12.15869 -12.06616 -11.98424 -11.94845 -11.85762 -11.57546 -11.50972 -11.47469 -11.05544 -10.71200 -10.23820 -8.89622 -7.84816 -5.20304 1.02358 1.46581 1.47275 1.57590 1.68057 1.82183 2.49692 2.54695 2.68915 2.88249 3.33739 3.40553 3.41569 3.54138 3.59871 3.82224 3.99518 4.01004 4.10887 4.18769 4.28551 4.38327 4.41415 4.60378 4.63984 4.66515 4.73298 4.77329 4.88873 4.92440 4.98917 5.03137 5.06368 5.13190 5.17551 5.23662 5.39787 5.41711 5.46452 5.67738 5.78198 6.20388 6.27248 6.91708 7.10758 7.78373 8.42578 9.25870 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.002970 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.085936 B = 9424.192179 C = 9750.581150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.241 4.241 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.121 4.121 12 C -0.099 4.099 13 H 0.085 0.915 14 C 0.142 3.858 15 N -0.714 5.714 16 C 0.525 3.475 17 O -0.548 6.548 18 C -0.128 4.128 19 C 0.465 3.535 20 F -0.166 7.166 21 F -0.179 7.179 22 F -0.184 7.184 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.117 4.117 27 C 0.139 3.861 28 H 0.246 0.754 29 H 0.011 0.989 30 H 0.005 0.995 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.411 0.589 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.046 0.954 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.596 -22.013 2.917 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.370 4.370 8 H 0.102 0.898 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.160 4.160 12 C -0.119 4.119 13 H 0.103 0.897 14 C 0.019 3.981 15 N -0.367 5.367 16 C 0.310 3.690 17 O -0.426 6.426 18 C -0.133 4.133 19 C 0.411 3.589 20 F -0.147 7.147 21 F -0.160 7.160 22 F -0.165 7.165 23 C -0.152 4.152 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.155 4.155 27 C 0.014 3.986 28 H 0.055 0.945 29 H 0.029 0.971 30 H 0.024 0.976 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.249 0.751 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.123 0.877 44 H 0.064 0.936 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 11.049 -22.276 2.456 24.987 hybrid contribution 0.040 1.689 0.612 1.797 sum 11.089 -20.587 3.068 23.584 Atomic orbital electron populations 1.70196 1.06342 1.25130 1.58429 1.25659 0.96604 1.01065 1.02721 0.85020 0.78301 0.79468 0.76615 1.18776 1.22096 1.21981 1.19521 0.91085 0.83714 1.42717 0.89764 1.44804 1.02493 1.01214 1.86996 1.20921 0.83839 0.91791 0.97698 1.22715 0.96935 0.94957 1.01361 1.22435 0.96409 0.92438 1.00609 0.89673 1.21280 0.85647 0.92423 0.98757 1.46178 1.24886 1.13470 1.52135 1.19937 0.86126 0.81901 0.81065 1.90684 1.54198 1.58717 1.38955 1.22907 0.97859 1.03564 0.88959 1.20212 0.73912 0.73615 0.91183 1.93200 1.44528 1.87973 1.89029 1.93158 1.95053 1.35693 1.92136 1.93211 1.58334 1.74946 1.90024 1.22310 1.01490 0.89431 1.01981 1.22379 0.95778 0.97186 0.99951 1.22557 1.02804 0.94204 0.96061 1.22712 0.93887 0.98695 1.00189 1.21731 0.95173 0.84430 0.97302 0.94492 0.97055 0.97627 0.90734 0.89663 0.91204 0.90380 0.75138 0.89212 0.89744 0.89398 0.89768 0.88256 0.91813 0.89772 0.87654 0.93574 0.95916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.40 10.31 21.65 0.22 -57.18 16 2 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 3 Si 0.98 45.52 29.55 68.60 2.03 47.55 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.24 -13.39 10.28 84.03 0.86 -12.53 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.63 -31.76 3.39 -692.04 -2.35 -34.11 16 10 C 0.18 8.93 5.38 86.73 0.47 9.40 16 11 C -0.12 -4.20 6.42 31.78 0.20 -4.00 16 12 C -0.10 -3.08 3.10 -9.41 -0.03 -3.11 16 13 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 14 C 0.14 3.72 5.12 86.38 0.44 4.17 16 15 N -0.71 -17.11 4.80 -463.08 -2.22 -19.33 16 16 C 0.53 12.86 6.22 87.66 0.55 13.40 16 17 O -0.55 -16.59 15.21 -3.04 -0.05 -16.64 16 18 C -0.13 -2.39 0.38 -52.21 -0.02 -2.41 16 19 C 0.47 9.07 2.04 71.98 0.15 9.21 16 20 F -0.17 -2.90 16.07 44.97 0.72 -2.18 16 21 F -0.18 -3.68 14.82 44.97 0.67 -3.02 16 22 F -0.18 -4.12 16.66 44.97 0.75 -3.37 16 23 C -0.11 -1.89 5.69 31.32 0.18 -1.71 16 24 C -0.12 -1.34 6.82 31.67 0.22 -1.12 16 25 C -0.12 -1.49 6.93 31.99 0.22 -1.26 16 26 C -0.12 -1.72 5.63 31.77 0.18 -1.54 16 27 C 0.14 5.29 6.41 86.85 0.56 5.84 16 28 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.01 0.62 7.38 -2.39 -0.02 0.60 16 30 H 0.01 0.30 7.50 -2.39 -0.02 0.29 16 31 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.07 1.91 8.10 -2.38 -0.02 1.89 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.41 9.10 6.31 -92.71 -0.59 8.52 16 36 H 0.09 1.84 6.39 -2.39 -0.02 1.82 16 37 H 0.08 1.25 7.32 -2.39 -0.02 1.24 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 1.32 7.50 -2.38 -0.02 1.30 16 43 H 0.11 1.25 7.25 -2.38 -0.02 1.23 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.02 0.87 8.00 -2.38 -0.02 0.85 16 Total: -1.00 -68.28 363.10 4.63 -63.65 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.43 Total: 13.66 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 4.44 Total: 10.96 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -4.35 Total: -110.62 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.05 Total: -16.64 kcal Atomic # 9 Polarization: -10.70 SS G_CDS: 2.14 Total: -8.56 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.28 4.63 -63.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731862319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.961 kcal (2) G-P(sol) polarization free energy of solvation -68.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.94 seconds