Wall clock time and date at job start Tue Mar 31 2020 20:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00008 * 2 1 4 4 H 1.48499 * 109.47741 * 270.00200 * 3 2 1 5 5 H 1.48503 * 109.47076 * 29.99922 * 3 2 1 6 6 H 1.48502 * 109.47151 * 149.99897 * 3 2 1 7 7 C 1.38809 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00007 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00303 * 180.02562 * 7 2 1 10 10 C 1.46494 * 119.99967 * 173.68550 * 9 7 2 11 11 C 1.53002 * 110.02048 * 62.76916 * 10 9 7 12 12 N 1.46490 * 109.47076 * 55.22841 * 11 10 9 13 13 C 1.34786 * 119.99887 * 175.31228 * 12 11 10 14 14 O 1.21691 * 119.99783 * 359.97438 * 13 12 11 15 15 C 1.46656 * 119.99889 * 180.02562 * 13 12 11 16 16 O 1.35395 * 126.12089 * 359.97364 * 15 13 12 17 17 C 1.34399 * 109.47709 * 179.97438 * 16 15 13 18 18 C 1.33813 * 108.59135 * 0.02562 * 17 16 15 19 19 C 1.35186 * 126.11723 * 179.97438 * 15 13 12 20 20 C 1.50726 * 130.57888 * 0.11392 * 19 15 13 21 21 C 1.53672 * 107.44141 * 164.21422 * 20 19 15 22 22 O 1.42896 * 109.98477 * 48.25931 * 21 20 19 23 23 C 1.43515 * 114.77348 * 287.65148 * 22 21 20 24 24 C 1.54266 * 110.07250 * 184.18252 * 10 9 7 25 25 C 1.54888 * 104.19784 * 95.69601 * 24 10 9 26 26 C 1.54896 * 102.74919 * 37.94209 * 25 24 10 27 27 C 1.53878 * 110.03325 * 301.37172 * 10 9 7 28 28 H 0.96997 * 119.99990 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99605 * 353.68271 * 9 7 2 30 30 H 1.09004 * 109.46551 * 295.23099 * 11 10 9 31 31 H 1.08994 * 109.47106 * 175.23485 * 11 10 9 32 32 H 0.97003 * 120.00399 * 355.30837 * 12 11 10 33 33 H 1.07994 * 125.72094 * 179.97438 * 17 16 15 34 34 H 1.09004 * 109.85762 * 44.73845 * 20 19 15 35 35 H 1.08996 * 109.86542 * 283.70530 * 20 19 15 36 36 H 1.09006 * 109.39203 * 288.10130 * 21 20 19 37 37 H 1.09004 * 109.29978 * 168.35944 * 21 20 19 38 38 H 1.09002 * 109.82322 * 171.04969 * 23 22 21 39 39 H 1.08999 * 109.82242 * 291.91592 * 23 22 21 40 40 H 1.09001 * 110.49301 * 214.37328 * 24 10 9 41 41 H 1.08998 * 110.48689 * 337.01869 * 24 10 9 42 42 H 1.09009 * 110.75653 * 279.63112 * 25 24 10 43 43 H 1.08999 * 110.76075 * 156.25827 * 25 24 10 44 44 H 1.08993 * 110.48837 * 203.37969 * 26 25 24 45 45 H 1.08998 * 110.47879 * 80.73327 * 26 25 24 46 46 H 1.08996 * 110.03276 * 359.95427 * 27 10 9 47 47 H 1.09004 * 110.03051 * 121.38492 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4632 0.1390 11 6 3.8048 -3.3808 -1.0462 12 7 4.1038 -2.6795 -2.2971 13 6 3.9988 -3.3271 -3.4745 14 8 3.6562 -4.4946 -3.4983 15 6 4.2987 -2.6252 -4.7267 16 8 4.6889 -1.3340 -4.8443 17 6 4.8729 -1.0378 -6.1422 18 6 4.6045 -2.1278 -6.8707 19 6 4.2351 -3.1516 -5.9702 20 6 3.8576 -4.5363 -6.4306 21 6 3.5761 -4.4593 -7.9394 22 8 4.6333 -3.7593 -8.5983 23 6 4.6566 -2.3440 -8.3616 24 6 5.6283 -2.1892 0.2157 25 6 5.9325 -2.1593 1.7341 26 6 5.0169 -3.2790 2.2884 27 6 3.7234 -3.1561 1.4568 28 1 -0.4850 0.8400 0.0004 29 1 3.8647 -0.3671 -0.0917 30 1 2.7505 -3.6573 -1.0277 31 1 4.4174 -4.2797 -0.9781 32 1 4.3772 -1.7490 -2.2781 33 1 5.1843 -0.0802 -6.5325 34 1 2.9639 -4.8709 -5.9038 35 1 4.6799 -5.2264 -6.2420 36 1 2.6355 -3.9340 -8.1057 37 1 3.5031 -5.4687 -8.3442 38 1 5.5744 -1.9167 -8.7654 39 1 3.7924 -1.8761 -8.8332 40 1 6.1859 -2.9905 -0.2692 41 1 5.8658 -1.2280 -0.2399 42 1 5.6645 -1.1936 2.1629 43 1 6.9812 -2.3892 1.9227 44 1 4.8082 -3.1130 3.3452 45 1 5.4757 -4.2562 2.1380 46 1 2.9904 -2.5536 1.9933 47 1 3.3157 -4.1461 1.2520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732393803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:14 Heat of formation + Delta-G solvation = -57.425999 kcal Electronic energy + Delta-G solvation = -29705.550431 eV Core-core repulsion = 25662.032430 eV Total energy + Delta-G solvation = -4043.518001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.84909 -39.45036 -38.68321 -38.20193 -34.39128 -33.65582 -33.29867 -32.17065 -31.04598 -29.60459 -28.43045 -28.08439 -26.38263 -24.91592 -23.57790 -23.01638 -22.29295 -20.54253 -19.83646 -19.73694 -18.74768 -17.82634 -17.61983 -16.57704 -16.43468 -16.10119 -15.87684 -15.34607 -15.14952 -14.99077 -14.71321 -14.45654 -14.22376 -13.95987 -13.58945 -13.30692 -13.08986 -12.93492 -12.77712 -12.61782 -12.30300 -12.14247 -11.96494 -11.69072 -11.26559 -11.06317 -10.92917 -10.80094 -10.68779 -10.58983 -10.40002 -10.21962 -10.09453 -10.02001 -9.79869 -9.61343 -9.51947 -8.97959 -8.83217 -8.46645 -7.36770 -5.82513 -3.20259 1.13245 2.15626 2.72385 3.31028 3.33624 3.37572 3.40434 3.50883 3.63354 4.33727 4.52693 4.56087 4.77727 4.86044 4.96000 5.01437 5.03359 5.06853 5.10354 5.17140 5.33204 5.37578 5.48974 5.53939 5.64104 5.69322 5.77538 5.84005 5.86518 5.89921 5.97084 5.97960 6.03444 6.11858 6.20654 6.25247 6.30300 6.43908 6.50252 6.56432 6.70232 6.73677 6.83334 6.93537 7.04255 7.84529 7.94961 8.35775 8.40945 9.13088 9.85153 10.03712 11.35315 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.003620 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.343016 B = 7733.093535 C = 8784.374911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.878 3.122 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.241 4.241 8 H 0.092 0.908 9 N -0.738 5.738 10 C 0.194 3.806 11 C 0.118 3.882 12 N -0.688 5.688 13 C 0.595 3.405 14 O -0.530 6.530 15 C -0.052 4.052 16 O -0.164 6.164 17 C 0.010 3.990 18 C -0.241 4.241 19 C -0.094 4.094 20 C -0.084 4.084 21 C 0.062 3.938 22 O -0.381 6.381 23 C 0.137 3.863 24 C -0.127 4.127 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.128 4.128 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.406 0.594 33 H 0.209 0.791 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.062 -4.706 -11.106 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.708 3.292 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.381 5.381 10 C 0.103 3.897 11 C -0.008 4.008 12 N -0.337 5.337 13 C 0.381 3.619 14 O -0.410 6.410 15 C -0.103 4.103 16 O -0.060 6.060 17 C -0.059 4.059 18 C -0.242 4.242 19 C -0.097 4.097 20 C -0.121 4.121 21 C -0.014 4.014 22 O -0.299 6.299 23 C 0.061 3.939 24 C -0.165 4.165 25 C -0.158 4.158 26 C -0.159 4.159 27 C -0.168 4.168 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.241 0.759 33 H 0.226 0.774 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.712 -5.492 -10.912 17.631 hybrid contribution 0.322 2.071 0.069 2.097 sum 13.035 -3.421 -10.843 17.297 Atomic orbital electron populations 1.69697 1.05138 1.25796 1.57048 1.24668 0.95114 0.97039 1.01799 0.86653 0.79442 0.85366 0.77692 1.21224 1.21847 1.20123 1.18941 0.80358 0.94613 1.43179 0.89074 1.42920 1.04085 1.02310 1.88763 1.20413 0.90066 0.87234 0.92030 1.22054 1.01409 0.94511 0.82829 1.45692 1.66722 1.15795 1.05476 1.16503 0.78463 0.85636 0.81345 1.90827 1.48883 1.15202 1.86053 1.21627 1.09892 0.82870 0.95954 1.84361 1.66932 1.27069 1.27620 1.23540 1.02247 0.99929 0.80186 1.20966 1.09883 0.94711 0.98662 1.20161 1.01123 0.97553 0.90871 1.20848 1.03574 0.91865 0.95838 1.22711 0.89753 0.97409 0.91561 1.87958 1.52204 1.19093 1.70648 1.20999 1.02387 0.82337 0.88213 1.22634 0.95763 1.01350 0.96717 1.22429 0.98451 0.99396 0.95491 1.22324 0.96345 0.97957 0.99245 1.22609 0.97513 1.00389 0.96281 0.93062 0.80590 0.90967 0.92010 0.75893 0.77401 0.88376 0.89327 0.92737 0.88149 0.87759 0.91599 0.91339 0.91836 0.91477 0.92375 0.92236 0.92372 0.89489 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.97 55.49 0.78 -27.57 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.12 27.67 -169.99 -4.70 16.42 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.19 6.61 56.52 0.37 -5.81 16 7 C -0.24 -6.28 8.96 -15.06 -0.13 -6.41 16 8 H 0.09 2.61 7.56 -52.48 -0.40 2.21 16 9 N -0.74 -15.64 4.32 -46.20 -0.20 -15.84 16 10 C 0.19 3.37 0.68 -130.70 -0.09 3.28 16 11 C 0.12 2.09 4.06 -4.05 -0.02 2.08 16 12 N -0.69 -12.12 5.22 -61.63 -0.32 -12.44 16 13 C 0.60 10.80 7.79 -12.86 -0.10 10.70 16 14 O -0.53 -10.56 15.63 5.20 0.08 -10.48 16 15 C -0.05 -0.85 7.11 -37.27 -0.27 -1.11 16 16 O -0.16 -2.42 10.44 2.33 0.02 -2.40 16 17 C 0.01 0.12 12.05 29.18 0.35 0.47 16 18 C -0.24 -2.93 6.05 -105.01 -0.63 -3.56 16 19 C -0.09 -1.38 6.02 -104.55 -0.63 -2.01 16 20 C -0.08 -1.09 5.71 -27.52 -0.16 -1.25 16 21 C 0.06 0.66 6.75 37.51 0.25 0.91 16 22 O -0.38 -4.41 10.70 -35.23 -0.38 -4.79 16 23 C 0.14 1.32 7.27 36.02 0.26 1.59 16 24 C -0.13 -1.82 5.72 -25.07 -0.14 -1.97 16 25 C -0.12 -1.61 6.91 -24.74 -0.17 -1.78 16 26 C -0.12 -1.66 6.83 -25.07 -0.17 -1.83 16 27 C -0.13 -2.15 5.92 -25.61 -0.15 -2.30 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.36 7.60 5.38 -40.82 -0.22 7.38 16 30 H 0.07 1.49 7.52 -51.93 -0.39 1.10 16 31 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.41 6.98 7.76 -40.82 -0.32 6.66 16 33 H 0.21 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.10 1.35 7.64 -51.93 -0.40 0.95 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.54 8.08 -51.93 -0.42 0.13 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.91 7.79 -51.93 -0.40 0.50 16 41 H 0.06 0.91 7.71 -51.93 -0.40 0.51 16 42 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.72 7.32 -51.93 -0.38 1.34 16 47 H 0.06 0.91 7.67 -51.93 -0.40 0.51 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -32.39 376.09 -8.06 -40.44 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -7.11 Total: 14.01 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.89 Total: -3.02 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.25 Total: -55.85 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.27 Total: -17.66 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.70 Total: 16.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.39 -8.06 -40.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732393803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.982 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds