Wall clock time and date at job start Tue Mar 31 2020 20:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00008 * 2 1 4 4 H 1.48499 * 109.47741 * 270.00200 * 3 2 1 5 5 H 1.48503 * 109.47076 * 29.99922 * 3 2 1 6 6 H 1.48502 * 109.47151 * 149.99897 * 3 2 1 7 7 C 1.38809 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00007 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00303 * 180.02562 * 7 2 1 10 10 C 1.46494 * 119.99967 * 173.68550 * 9 7 2 11 11 C 1.53002 * 110.02048 * 62.76916 * 10 9 7 12 12 N 1.46490 * 109.47076 * 55.22841 * 11 10 9 13 13 C 1.34786 * 119.99887 * 175.31228 * 12 11 10 14 14 O 1.21691 * 119.99783 * 359.97438 * 13 12 11 15 15 C 1.46656 * 119.99889 * 180.02562 * 13 12 11 16 16 O 1.35395 * 126.12089 * 359.97364 * 15 13 12 17 17 C 1.34399 * 109.47709 * 179.97438 * 16 15 13 18 18 C 1.33813 * 108.59135 * 0.02562 * 17 16 15 19 19 C 1.35186 * 126.11723 * 179.97438 * 15 13 12 20 20 C 1.50726 * 130.57888 * 0.11392 * 19 15 13 21 21 C 1.53672 * 107.44141 * 164.21422 * 20 19 15 22 22 O 1.42896 * 109.98477 * 48.25931 * 21 20 19 23 23 C 1.43515 * 114.77348 * 287.65148 * 22 21 20 24 24 C 1.54266 * 110.07250 * 184.18252 * 10 9 7 25 25 C 1.54888 * 104.19784 * 95.69601 * 24 10 9 26 26 C 1.54896 * 102.74919 * 37.94209 * 25 24 10 27 27 C 1.53878 * 110.03325 * 301.37172 * 10 9 7 28 28 H 0.96997 * 119.99990 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99605 * 353.68271 * 9 7 2 30 30 H 1.09004 * 109.46551 * 295.23099 * 11 10 9 31 31 H 1.08994 * 109.47106 * 175.23485 * 11 10 9 32 32 H 0.97003 * 120.00399 * 355.30837 * 12 11 10 33 33 H 1.07994 * 125.72094 * 179.97438 * 17 16 15 34 34 H 1.09004 * 109.85762 * 44.73845 * 20 19 15 35 35 H 1.08996 * 109.86542 * 283.70530 * 20 19 15 36 36 H 1.09006 * 109.39203 * 288.10130 * 21 20 19 37 37 H 1.09004 * 109.29978 * 168.35944 * 21 20 19 38 38 H 1.09002 * 109.82322 * 171.04969 * 23 22 21 39 39 H 1.08999 * 109.82242 * 291.91592 * 23 22 21 40 40 H 1.09001 * 110.49301 * 214.37328 * 24 10 9 41 41 H 1.08998 * 110.48689 * 337.01869 * 24 10 9 42 42 H 1.09009 * 110.75653 * 279.63112 * 25 24 10 43 43 H 1.08999 * 110.76075 * 156.25827 * 25 24 10 44 44 H 1.08993 * 110.48837 * 203.37969 * 26 25 24 45 45 H 1.08998 * 110.47879 * 80.73327 * 26 25 24 46 46 H 1.08996 * 110.03276 * 359.95427 * 27 10 9 47 47 H 1.09004 * 110.03051 * 121.38492 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4632 0.1390 11 6 3.8048 -3.3808 -1.0462 12 7 4.1038 -2.6795 -2.2971 13 6 3.9988 -3.3271 -3.4745 14 8 3.6562 -4.4946 -3.4983 15 6 4.2987 -2.6252 -4.7267 16 8 4.6889 -1.3340 -4.8443 17 6 4.8729 -1.0378 -6.1422 18 6 4.6045 -2.1278 -6.8707 19 6 4.2351 -3.1516 -5.9702 20 6 3.8576 -4.5363 -6.4306 21 6 3.5761 -4.4593 -7.9394 22 8 4.6333 -3.7593 -8.5983 23 6 4.6566 -2.3440 -8.3616 24 6 5.6283 -2.1892 0.2157 25 6 5.9325 -2.1593 1.7341 26 6 5.0169 -3.2790 2.2884 27 6 3.7234 -3.1561 1.4568 28 1 -0.4850 0.8400 0.0004 29 1 3.8647 -0.3671 -0.0917 30 1 2.7505 -3.6573 -1.0277 31 1 4.4174 -4.2797 -0.9781 32 1 4.3772 -1.7490 -2.2781 33 1 5.1843 -0.0802 -6.5325 34 1 2.9639 -4.8709 -5.9038 35 1 4.6799 -5.2264 -6.2420 36 1 2.6355 -3.9340 -8.1057 37 1 3.5031 -5.4687 -8.3442 38 1 5.5744 -1.9167 -8.7654 39 1 3.7924 -1.8761 -8.8332 40 1 6.1859 -2.9905 -0.2692 41 1 5.8658 -1.2280 -0.2399 42 1 5.6645 -1.1936 2.1629 43 1 6.9812 -2.3892 1.9227 44 1 4.8082 -3.1130 3.3452 45 1 5.4757 -4.2562 2.1380 46 1 2.9904 -2.5536 1.9933 47 1 3.3157 -4.1461 1.2520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732393803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:06 Heat of formation + Delta-G solvation = -80.503916 kcal Electronic energy + Delta-G solvation = -29706.551165 eV Core-core repulsion = 25662.032430 eV Total energy + Delta-G solvation = -4044.518735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.89110 -40.87569 -39.61441 -39.54094 -35.75406 -35.28772 -34.57108 -33.13093 -32.87622 -30.85660 -29.69127 -29.45667 -27.21629 -26.33551 -24.96821 -24.42555 -23.51792 -21.74712 -21.11735 -20.74806 -20.13956 -19.58869 -19.05007 -17.63609 -17.54088 -17.29369 -16.98839 -16.56933 -16.26485 -16.21451 -16.01551 -15.83497 -15.73995 -15.29867 -14.75555 -14.64026 -14.45418 -14.22719 -14.18117 -13.77486 -13.67259 -13.50663 -13.24352 -12.98887 -12.72112 -12.58960 -12.21589 -11.94367 -11.91965 -11.88979 -11.86549 -11.70453 -11.56390 -11.43099 -11.30238 -10.95578 -10.82102 -10.52869 -10.18045 -9.63226 -9.32326 -7.98851 -5.33502 -0.02377 1.19388 1.37557 1.40708 1.48199 1.63248 2.03609 2.25841 2.49954 2.81007 3.29411 3.39003 3.49831 3.60913 3.71106 3.77873 3.88672 3.93168 4.01064 4.18295 4.28428 4.33732 4.39635 4.49356 4.49945 4.64035 4.66871 4.69875 4.77901 4.78223 4.81801 4.91312 4.94869 4.97441 5.02728 5.04017 5.16705 5.23944 5.25936 5.32947 5.36714 5.45123 5.62552 5.75121 5.86312 6.11730 6.24716 6.45363 6.99863 7.10875 7.84604 8.04359 9.22831 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.003620 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.343016 B = 7733.093535 C = 8784.374911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.063 4.063 3 Si 0.949 3.051 4 H -0.280 1.280 5 H -0.304 1.304 6 H -0.246 1.246 7 C -0.210 4.210 8 H 0.051 0.949 9 N -0.735 5.735 10 C 0.188 3.812 11 C 0.126 3.874 12 N -0.688 5.688 13 C 0.591 3.409 14 O -0.560 6.560 15 C -0.093 4.093 16 O -0.178 6.178 17 C 0.030 3.970 18 C -0.252 4.252 19 C -0.098 4.098 20 C -0.087 4.087 21 C 0.067 3.933 22 O -0.393 6.393 23 C 0.135 3.865 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.113 4.113 27 C -0.130 4.130 28 H 0.254 0.746 29 H 0.366 0.634 30 H 0.031 0.969 31 H 0.078 0.922 32 H 0.408 0.592 33 H 0.259 0.741 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.639 -3.534 -12.526 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.254 4.254 3 Si 0.776 3.224 4 H -0.207 1.207 5 H -0.232 1.232 6 H -0.170 1.170 7 C -0.341 4.341 8 H 0.069 0.931 9 N -0.379 5.379 10 C 0.098 3.902 11 C 0.000 4.000 12 N -0.336 5.336 13 C 0.378 3.622 14 O -0.442 6.442 15 C -0.144 4.144 16 O -0.074 6.074 17 C -0.039 4.039 18 C -0.254 4.254 19 C -0.101 4.101 20 C -0.125 4.125 21 C -0.009 4.009 22 O -0.312 6.312 23 C 0.059 3.941 24 C -0.157 4.157 25 C -0.153 4.153 26 C -0.151 4.151 27 C -0.170 4.170 28 H 0.063 0.937 29 H 0.200 0.800 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.244 0.756 33 H 0.275 0.725 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.359 -4.344 -12.327 20.939 hybrid contribution -0.801 1.592 0.428 1.833 sum 15.559 -2.751 -11.899 19.779 Atomic orbital electron populations 1.69899 1.07330 1.26326 1.60189 1.25448 0.95880 1.01029 1.03028 0.85503 0.78956 0.79983 0.77908 1.20653 1.23185 1.16988 1.18764 0.82449 0.92834 1.40013 0.93076 1.42849 1.02308 1.04109 1.88590 1.20693 0.92258 0.85451 0.91760 1.21913 0.99257 0.95434 0.83408 1.45656 1.66773 1.15824 1.05340 1.16808 0.77739 0.85515 0.82092 1.90791 1.50223 1.16464 1.86684 1.21266 1.13512 0.84117 0.95474 1.84335 1.67281 1.26217 1.29597 1.24575 0.99302 1.01370 0.78640 1.21348 1.10050 0.94084 0.99900 1.20605 0.99668 0.98754 0.91109 1.20901 1.02637 0.91199 0.97735 1.22741 0.89781 0.98792 0.89611 1.87944 1.52472 1.20265 1.70492 1.21320 1.04675 0.81612 0.86474 1.22610 0.92629 1.02398 0.98076 1.22432 1.00088 0.98627 0.94110 1.22306 0.94378 0.99503 0.98911 1.22554 0.98748 0.99502 0.96162 0.93707 0.79986 0.95019 0.90371 0.75579 0.72525 0.90002 0.89702 0.92175 0.86049 0.84936 0.89823 0.89487 0.91162 0.92514 0.89234 0.91556 0.90137 0.93117 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.99 13.97 21.65 0.30 -62.69 16 2 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 3 Si 0.95 44.05 27.67 68.60 1.90 45.95 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 6 H -0.25 -10.07 6.61 99.48 0.66 -9.41 16 7 C -0.21 -11.34 8.96 84.03 0.75 -10.59 16 8 H 0.05 3.14 7.56 -2.91 -0.02 3.12 16 9 N -0.74 -31.23 4.32 -300.07 -1.30 -32.53 16 10 C 0.19 6.50 0.68 4.33 0.00 6.50 16 11 C 0.13 4.60 4.06 86.38 0.35 4.95 16 12 N -0.69 -24.70 5.22 -467.11 -2.44 -27.14 16 13 C 0.59 22.21 7.79 86.44 0.67 22.88 16 14 O -0.56 -23.43 15.63 -4.32 -0.07 -23.49 16 15 C -0.09 -3.05 7.11 23.77 0.17 -2.88 16 16 O -0.18 -5.02 10.44 -14.57 -0.15 -5.17 16 17 C 0.03 0.58 12.05 66.81 0.81 1.39 16 18 C -0.25 -5.53 6.05 -20.11 -0.12 -5.65 16 19 C -0.10 -2.85 6.02 -19.82 -0.12 -2.97 16 20 C -0.09 -2.29 5.71 30.08 0.17 -2.12 16 21 C 0.07 1.33 6.75 72.21 0.49 1.82 16 22 O -0.39 -8.14 10.70 -148.98 -1.59 -9.74 16 23 C 0.14 2.15 7.27 71.25 0.52 2.67 16 24 C -0.12 -3.11 5.72 31.67 0.18 -2.93 16 25 C -0.12 -2.70 6.91 31.89 0.22 -2.48 16 26 C -0.11 -2.84 6.83 31.67 0.22 -2.62 16 27 C -0.13 -4.40 5.92 31.32 0.19 -4.21 16 28 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.37 14.85 5.38 -92.71 -0.50 14.36 16 30 H 0.03 1.40 7.52 -2.39 -0.02 1.38 16 31 H 0.08 2.59 8.04 -2.39 -0.02 2.57 16 32 H 0.41 14.02 7.76 -92.71 -0.72 13.30 16 33 H 0.26 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.08 2.38 7.64 -2.39 -0.02 2.36 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 1.11 8.08 -2.38 -0.02 1.10 16 37 H 0.12 1.83 8.14 -2.39 -0.02 1.82 16 38 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 2.00 7.79 -2.39 -0.02 1.98 16 41 H 0.07 1.78 7.71 -2.39 -0.02 1.76 16 42 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 43 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.05 2.08 7.32 -2.39 -0.02 2.06 16 47 H 0.05 1.84 7.67 -2.38 -0.02 1.82 16 Total: -1.00 -75.54 376.09 1.35 -74.20 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.26 Total: 39.99 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 4.96 Total: 0.62 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -3.43 Total: -122.36 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -1.81 Total: -38.40 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.90 Total: 45.95 kcal Total: -75.54 1.35 -74.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732393803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.306 kcal (2) G-P(sol) polarization free energy of solvation -75.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds