Wall clock time and date at job start Tue Mar 31 2020 21:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99964 * 2 1 4 4 H 1.48500 * 109.47204 * 270.00069 * 3 2 1 5 5 H 1.48498 * 109.47319 * 30.00337 * 3 2 1 6 6 H 1.48503 * 109.46958 * 150.00269 * 3 2 1 7 7 C 1.38813 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00465 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99433 * 179.97438 * 7 2 1 10 10 C 1.46508 * 120.00083 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47270 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.46851 * 60.00067 * 11 10 9 13 13 O 1.42897 * 109.46698 * 299.99926 * 11 10 9 14 14 C 1.53001 * 109.46969 * 180.02562 * 11 10 9 15 15 N 1.46497 * 109.46950 * 184.99982 * 14 11 10 16 16 C 1.34780 * 119.99939 * 180.02562 * 15 14 11 17 17 O 1.21286 * 119.99613 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00160 * 180.02562 * 16 15 14 19 19 C 1.50697 * 109.46933 * 179.97438 * 18 16 15 20 20 C 1.38286 * 120.01378 * 270.01861 * 19 18 16 21 21 C 1.37965 * 119.96674 * 180.02562 * 20 19 18 22 22 C 1.39151 * 120.21192 * 0.04617 * 21 20 19 23 23 C 1.38369 * 119.69228 * 359.81552 * 22 21 20 24 24 C 1.38106 * 120.00599 * 90.00064 * 19 18 16 25 25 C 1.50770 * 121.41162 * 180.31142 * 23 22 21 26 26 C 1.53075 * 109.68771 * 342.21296 * 25 23 22 27 27 C 1.53407 * 108.29127 * 48.18900 * 26 25 23 28 28 O 1.35844 * 118.50197 * 179.75921 * 22 21 20 29 29 H 0.97004 * 120.00179 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00710 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46616 * 59.99897 * 10 9 7 32 32 H 1.08996 * 109.46613 * 300.00223 * 10 9 7 33 33 H 0.96700 * 114.00224 * 299.99781 * 13 11 10 34 34 H 1.08999 * 109.47250 * 64.99826 * 14 11 10 35 35 H 1.09006 * 109.46891 * 304.99989 * 14 11 10 36 36 H 0.96996 * 120.00024 * 359.97438 * 15 14 11 37 37 H 1.09000 * 109.46891 * 59.99300 * 18 16 15 38 38 H 1.09002 * 109.46783 * 299.99441 * 18 16 15 39 39 H 1.08005 * 120.01819 * 0.06473 * 20 19 18 40 40 H 1.08000 * 119.89633 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.84627 * 0.02562 * 24 19 18 42 42 H 1.08998 * 109.44213 * 102.25510 * 25 23 22 43 43 H 1.09001 * 109.44083 * 222.14299 * 25 23 22 44 44 H 1.08997 * 109.66773 * 288.50700 * 26 25 23 45 45 H 1.08997 * 109.72892 * 167.90601 * 26 25 23 46 46 H 1.09002 * 109.68065 * 175.58527 * 27 26 25 47 47 H 1.08999 * 109.68092 * 55.07058 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6164 -2.1914 -0.0011 12 1 5.8796 -1.6198 0.8889 13 8 5.9615 -1.4421 -1.1679 14 6 6.3814 -3.5164 -0.0017 15 7 7.8171 -3.2514 0.1187 16 6 8.6922 -4.2763 0.1391 17 8 8.2909 -5.4180 0.0583 18 6 10.1691 -4.0037 0.2635 19 6 10.9225 -5.3088 0.2627 20 6 11.1773 -5.9611 1.4551 21 6 11.8676 -7.1557 1.4534 22 6 12.3100 -7.7070 0.2547 23 6 12.0510 -7.0535 -0.9371 24 6 11.3584 -5.8540 -0.9290 25 6 12.5061 -7.6192 -2.2585 26 6 13.5959 -8.6680 -2.0225 27 6 13.1157 -9.6220 -0.9213 28 8 12.9906 -8.8820 0.2938 29 1 -0.4850 0.8401 0.0004 30 1 3.8647 -0.3621 -0.0014 31 1 3.8484 -3.0427 -0.8908 32 1 3.8491 -3.0423 0.8891 33 1 5.7547 -1.8909 -1.9990 34 1 6.1868 -4.0478 -0.9333 35 1 6.0526 -4.1262 0.8399 36 1 8.1380 -2.3383 0.1829 37 1 10.3633 -3.4729 1.1955 38 1 10.4980 -3.3934 -0.5776 39 1 10.8356 -5.5360 2.3873 40 1 12.0664 -7.6639 2.3853 41 1 11.1583 -5.3427 -1.8589 42 1 11.6600 -8.0836 -2.7650 43 1 12.9037 -6.8163 -2.8792 44 1 14.5161 -8.1762 -1.7072 45 1 13.7736 -9.2270 -2.9412 46 1 13.8411 -10.4248 -0.7891 47 1 12.1485 -10.0427 -1.1961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732645772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:17 Heat of formation + Delta-G solvation = -97.918919 kcal Electronic energy + Delta-G solvation = -27478.173819 eV Core-core repulsion = 23432.899913 eV Total energy + Delta-G solvation = -4045.273906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.03169 -39.89483 -38.13966 -37.52214 -34.68815 -34.49455 -34.12250 -32.69431 -31.48944 -30.78567 -29.70390 -27.97883 -25.99474 -25.27293 -23.65267 -22.75904 -22.18866 -21.53447 -20.63258 -19.76529 -18.08231 -17.77876 -17.40150 -17.06540 -16.58154 -16.13657 -16.02758 -15.31097 -15.22106 -14.80411 -14.74384 -14.54344 -14.31425 -14.14944 -13.80783 -13.75607 -13.55767 -13.42023 -13.23698 -12.88684 -12.72647 -12.42423 -12.25274 -11.98198 -11.88472 -11.66424 -11.35105 -11.31172 -11.12035 -10.88314 -10.83166 -10.77168 -10.20765 -10.10195 -9.74626 -9.56574 -9.17060 -9.03022 -8.94446 -8.31354 -7.27524 -5.79227 -3.15528 1.06904 1.12232 2.54185 2.90766 3.06763 3.38178 3.42853 3.45443 3.53372 4.17715 4.26374 4.33655 4.44196 4.49716 4.51811 4.58317 4.66466 4.71771 4.83125 4.86752 4.98633 4.99274 5.12473 5.13427 5.15876 5.23598 5.30343 5.38675 5.43963 5.49700 5.57881 5.59246 5.68871 5.77717 5.78351 5.83761 5.97214 6.13568 6.30702 6.33225 6.40373 6.50129 6.53355 7.14883 7.39209 7.75113 7.96785 8.13176 8.39245 9.18798 9.90668 10.10462 11.38775 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032848 B = 0.001685 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.207054 B =16609.021695 C =16632.033322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.889 3.111 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.130 3.870 11 C 0.085 3.915 12 H 0.104 0.896 13 O -0.557 6.557 14 C 0.091 3.909 15 N -0.724 5.724 16 C 0.510 3.490 17 O -0.534 6.534 18 C -0.098 4.098 19 C -0.095 4.095 20 C -0.072 4.072 21 C -0.146 4.146 22 C 0.129 3.871 23 C -0.160 4.160 24 C -0.069 4.069 25 C -0.078 4.078 26 C -0.160 4.160 27 C 0.060 3.940 28 O -0.318 6.318 29 H 0.260 0.740 30 H 0.366 0.634 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.376 0.624 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.404 0.596 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.197 -15.118 -2.250 35.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.719 3.281 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.107 0.893 9 N -0.395 5.395 10 C 0.002 3.998 11 C 0.026 3.974 12 H 0.122 0.878 13 O -0.362 6.362 14 C -0.034 4.034 15 N -0.377 5.377 16 C 0.296 3.704 17 O -0.410 6.410 18 C -0.138 4.138 19 C -0.096 4.096 20 C -0.090 4.090 21 C -0.165 4.165 22 C 0.085 3.915 23 C -0.160 4.160 24 C -0.087 4.087 25 C -0.115 4.115 26 C -0.197 4.197 27 C -0.015 4.015 28 O -0.232 6.232 29 H 0.070 0.930 30 H 0.200 0.800 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.224 0.776 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.239 0.761 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.124 0.876 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 31.934 -15.697 -1.706 35.625 hybrid contribution 0.270 1.230 -0.586 1.389 sum 32.204 -14.467 -2.293 35.379 Atomic orbital electron populations 1.69712 1.05135 1.25921 1.57274 1.24678 0.95250 0.97328 1.01786 0.86486 0.79087 0.84689 0.77861 1.21015 1.21796 1.20307 1.19048 0.80526 0.94789 1.43489 0.89264 1.42558 1.03923 1.01994 1.91075 1.21174 0.88575 0.90303 0.99750 1.22442 0.94678 0.90827 0.89496 0.87814 1.86535 1.86007 1.47758 1.15929 1.22061 0.79893 0.98269 1.03144 1.45953 1.06910 1.09738 1.75095 1.20585 0.88204 0.85178 0.76436 1.90739 1.80073 1.21442 1.48729 1.20608 0.91400 0.96542 1.05239 1.19108 1.00369 0.96650 0.93434 1.20753 0.96491 0.94003 0.97749 1.20523 1.01917 0.97526 0.96538 1.18660 0.93350 0.86023 0.93503 1.19715 1.04638 0.97353 0.94339 1.20692 0.96142 0.94337 0.97515 1.20468 0.98414 0.98574 0.94077 1.22232 0.99403 0.98128 0.99943 1.22962 1.01900 0.93389 0.83243 1.85981 1.70512 1.31795 1.34931 0.93010 0.80031 0.95039 0.94505 0.77621 0.90998 0.90343 0.76134 0.87912 0.87991 0.85497 0.85232 0.86000 0.90392 0.90020 0.90450 0.89716 0.87572 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.89 22.31 27.73 -169.99 -4.71 17.59 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.59 5.30 -59.91 -0.32 -17.90 16 10 C 0.13 2.37 5.92 -4.04 -0.02 2.34 16 11 C 0.09 1.18 3.09 -26.73 -0.08 1.09 16 12 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 13 O -0.56 -7.77 13.03 -35.23 -0.46 -8.23 16 14 C 0.09 1.09 5.31 -4.04 -0.02 1.07 16 15 N -0.72 -7.42 5.50 -60.29 -0.33 -7.76 16 16 C 0.51 5.79 7.82 -10.98 -0.09 5.70 16 17 O -0.53 -8.37 16.03 5.55 0.09 -8.28 16 18 C -0.10 -0.77 5.83 -29.04 -0.17 -0.94 16 19 C -0.09 -0.93 4.37 -104.65 -0.46 -1.39 16 20 C -0.07 -0.70 9.70 -39.66 -0.38 -1.09 16 21 C -0.15 -1.50 9.94 -39.34 -0.39 -1.89 16 22 C 0.13 1.37 6.47 -39.19 -0.25 1.12 16 23 C -0.16 -1.55 5.75 -104.44 -0.60 -2.15 16 24 C -0.07 -0.67 9.32 -39.53 -0.37 -1.04 16 25 C -0.08 -0.54 5.86 -27.81 -0.16 -0.71 16 26 C -0.16 -0.88 6.20 -26.48 -0.16 -1.04 16 27 C 0.06 0.39 7.02 37.37 0.26 0.65 16 28 O -0.32 -3.14 10.27 -19.25 -0.20 -3.34 16 29 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 30 H 0.37 8.56 5.41 -40.82 -0.22 8.34 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.38 4.34 9.04 45.56 0.41 4.75 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 3.35 8.47 -40.82 -0.35 3.00 16 37 H 0.10 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.10 0.59 8.09 -51.93 -0.42 0.17 16 39 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -36.46 390.34 -8.93 -45.39 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -6.50 Total: 10.63 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.16 Total: -5.41 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.13 Total: -54.24 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.57 Total: -19.86 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.46 -8.93 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732645772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.525 kcal (2) G-P(sol) polarization free energy of solvation -36.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds