Wall clock time and date at job start Tue Mar 31 2020 21:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99964 * 2 1 4 4 H 1.48500 * 109.47204 * 270.00069 * 3 2 1 5 5 H 1.48498 * 109.47319 * 30.00337 * 3 2 1 6 6 H 1.48503 * 109.46958 * 150.00269 * 3 2 1 7 7 C 1.38813 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00465 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99433 * 179.97438 * 7 2 1 10 10 C 1.46508 * 120.00083 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47270 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.46851 * 60.00067 * 11 10 9 13 13 O 1.42897 * 109.46698 * 299.99926 * 11 10 9 14 14 C 1.53001 * 109.46969 * 180.02562 * 11 10 9 15 15 N 1.46497 * 109.46950 * 184.99982 * 14 11 10 16 16 C 1.34780 * 119.99939 * 180.02562 * 15 14 11 17 17 O 1.21286 * 119.99613 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00160 * 180.02562 * 16 15 14 19 19 C 1.50697 * 109.46933 * 179.97438 * 18 16 15 20 20 C 1.38286 * 120.01378 * 270.01861 * 19 18 16 21 21 C 1.37965 * 119.96674 * 180.02562 * 20 19 18 22 22 C 1.39151 * 120.21192 * 0.04617 * 21 20 19 23 23 C 1.38369 * 119.69228 * 359.81552 * 22 21 20 24 24 C 1.38106 * 120.00599 * 90.00064 * 19 18 16 25 25 C 1.50770 * 121.41162 * 180.31142 * 23 22 21 26 26 C 1.53075 * 109.68771 * 342.21296 * 25 23 22 27 27 C 1.53407 * 108.29127 * 48.18900 * 26 25 23 28 28 O 1.35844 * 118.50197 * 179.75921 * 22 21 20 29 29 H 0.97004 * 120.00179 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00710 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46616 * 59.99897 * 10 9 7 32 32 H 1.08996 * 109.46613 * 300.00223 * 10 9 7 33 33 H 0.96700 * 114.00224 * 299.99781 * 13 11 10 34 34 H 1.08999 * 109.47250 * 64.99826 * 14 11 10 35 35 H 1.09006 * 109.46891 * 304.99989 * 14 11 10 36 36 H 0.96996 * 120.00024 * 359.97438 * 15 14 11 37 37 H 1.09000 * 109.46891 * 59.99300 * 18 16 15 38 38 H 1.09002 * 109.46783 * 299.99441 * 18 16 15 39 39 H 1.08005 * 120.01819 * 0.06473 * 20 19 18 40 40 H 1.08000 * 119.89633 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.84627 * 0.02562 * 24 19 18 42 42 H 1.08998 * 109.44213 * 102.25510 * 25 23 22 43 43 H 1.09001 * 109.44083 * 222.14299 * 25 23 22 44 44 H 1.08997 * 109.66773 * 288.50700 * 26 25 23 45 45 H 1.08997 * 109.72892 * 167.90601 * 26 25 23 46 46 H 1.09002 * 109.68065 * 175.58527 * 27 26 25 47 47 H 1.08999 * 109.68092 * 55.07058 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6164 -2.1914 -0.0011 12 1 5.8796 -1.6198 0.8889 13 8 5.9615 -1.4421 -1.1679 14 6 6.3814 -3.5164 -0.0017 15 7 7.8171 -3.2514 0.1187 16 6 8.6922 -4.2763 0.1391 17 8 8.2909 -5.4180 0.0583 18 6 10.1691 -4.0037 0.2635 19 6 10.9225 -5.3088 0.2627 20 6 11.1773 -5.9611 1.4551 21 6 11.8676 -7.1557 1.4534 22 6 12.3100 -7.7070 0.2547 23 6 12.0510 -7.0535 -0.9371 24 6 11.3584 -5.8540 -0.9290 25 6 12.5061 -7.6192 -2.2585 26 6 13.5959 -8.6680 -2.0225 27 6 13.1157 -9.6220 -0.9213 28 8 12.9906 -8.8820 0.2938 29 1 -0.4850 0.8401 0.0004 30 1 3.8647 -0.3621 -0.0014 31 1 3.8484 -3.0427 -0.8908 32 1 3.8491 -3.0423 0.8891 33 1 5.7547 -1.8909 -1.9990 34 1 6.1868 -4.0478 -0.9333 35 1 6.0526 -4.1262 0.8399 36 1 8.1380 -2.3383 0.1829 37 1 10.3633 -3.4729 1.1955 38 1 10.4980 -3.3934 -0.5776 39 1 10.8356 -5.5360 2.3873 40 1 12.0664 -7.6639 2.3853 41 1 11.1583 -5.3427 -1.8589 42 1 11.6600 -8.0836 -2.7650 43 1 12.9037 -6.8163 -2.8792 44 1 14.5161 -8.1762 -1.7072 45 1 13.7736 -9.2270 -2.9412 46 1 13.8411 -10.4248 -0.7891 47 1 12.1485 -10.0427 -1.1961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732645772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:12 Heat of formation + Delta-G solvation = -126.058587 kcal Electronic energy + Delta-G solvation = -27479.394046 eV Core-core repulsion = 23432.899913 eV Total energy + Delta-G solvation = -4046.494134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 18.26 seconds Orbital eigenvalues (eV) -41.68422 -40.77874 -39.13496 -38.40799 -36.18135 -35.26072 -35.22980 -33.52011 -33.33650 -31.40855 -30.98578 -28.84834 -27.02214 -26.26960 -24.41197 -23.90737 -23.30599 -22.83533 -21.52563 -20.41524 -19.78722 -18.73249 -18.30732 -17.71852 -17.61738 -17.20393 -16.77380 -16.53659 -16.18006 -16.07225 -15.55474 -15.42421 -15.37381 -15.05971 -14.89266 -14.79482 -14.60122 -14.28572 -14.20648 -14.02251 -13.95755 -13.40530 -13.30478 -13.20973 -12.84138 -12.79079 -12.53867 -12.25358 -12.23262 -11.88807 -11.87790 -11.83228 -11.66431 -11.35798 -11.17800 -11.02337 -10.79693 -10.09351 -9.72174 -9.32271 -9.01298 -8.04016 -5.37979 0.37085 0.40291 1.39796 1.43036 1.50504 1.69149 2.14532 2.39051 2.48486 2.81240 3.26672 3.36933 3.55392 3.64225 3.71565 3.80232 3.84037 3.94856 3.98527 4.04103 4.11699 4.21243 4.27463 4.30671 4.43091 4.46522 4.59624 4.61225 4.64846 4.70013 4.73089 4.76444 4.91424 4.92016 5.04446 5.08271 5.16279 5.18126 5.28952 5.42030 5.46272 5.63439 5.73047 5.85067 6.19320 6.49647 6.59521 6.76357 7.07166 7.30438 7.82214 8.02147 9.17225 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032848 B = 0.001685 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.207054 B =16609.021695 C =16632.033322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.064 4.064 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.240 4.240 8 H 0.055 0.945 9 N -0.751 5.751 10 C 0.122 3.878 11 C 0.108 3.892 12 H 0.111 0.889 13 O -0.562 6.562 14 C 0.101 3.899 15 N -0.713 5.713 16 C 0.510 3.490 17 O -0.582 6.582 18 C -0.090 4.090 19 C -0.107 4.107 20 C -0.083 4.083 21 C -0.165 4.165 22 C 0.110 3.890 23 C -0.171 4.171 24 C -0.081 4.081 25 C -0.081 4.081 26 C -0.154 4.154 27 C 0.050 3.950 28 O -0.336 6.336 29 H 0.258 0.742 30 H 0.370 0.630 31 H 0.033 0.967 32 H 0.036 0.964 33 H 0.387 0.613 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.417 0.583 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.129 0.871 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.039 -14.067 -2.843 37.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.176 1.176 7 C -0.371 4.371 8 H 0.073 0.927 9 N -0.398 5.398 10 C -0.005 4.005 11 C 0.048 3.952 12 H 0.129 0.871 13 O -0.369 6.369 14 C -0.024 4.024 15 N -0.366 5.366 16 C 0.298 3.702 17 O -0.462 6.462 18 C -0.129 4.129 19 C -0.107 4.107 20 C -0.101 4.101 21 C -0.183 4.183 22 C 0.066 3.934 23 C -0.172 4.172 24 C -0.099 4.099 25 C -0.118 4.118 26 C -0.191 4.191 27 C -0.024 4.024 28 O -0.251 6.251 29 H 0.067 0.933 30 H 0.204 0.796 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.128 0.872 46 H 0.147 0.853 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 34.839 -14.651 -2.307 37.865 hybrid contribution -0.635 0.748 -0.423 1.069 sum 34.204 -13.903 -2.729 37.022 Atomic orbital electron populations 1.69895 1.07205 1.26797 1.59438 1.25543 0.96142 1.01448 1.02389 0.85321 0.78483 0.79265 0.78114 1.20472 1.22275 1.17626 1.19046 0.82785 0.93497 1.41763 0.92666 1.42519 1.02260 1.04054 1.90931 1.21406 0.91354 0.88147 0.99579 1.22127 0.91476 0.91673 0.89965 0.87078 1.86514 1.85756 1.48165 1.16466 1.21789 0.80933 0.96932 1.02754 1.45818 1.05917 1.10414 1.74415 1.21166 0.89540 0.84374 0.75084 1.90728 1.81024 1.23409 1.51041 1.20655 0.88287 0.96158 1.07785 1.19396 1.00419 0.97533 0.93399 1.21010 0.96456 0.93993 0.98628 1.20768 1.02465 0.98114 0.96964 1.18906 0.93900 0.86584 0.94056 1.20076 1.04373 0.97452 0.95258 1.20989 0.96161 0.94577 0.98208 1.20561 0.98949 0.99375 0.92884 1.22221 0.98570 0.97703 1.00596 1.23256 1.02605 0.93887 0.82682 1.85950 1.70464 1.31795 1.36841 0.93279 0.79633 0.94887 0.94629 0.76324 0.91334 0.91086 0.74566 0.85236 0.85328 0.84123 0.84764 0.84652 0.90288 0.88719 0.90768 0.87245 0.85326 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.14 13.97 21.65 0.30 -62.84 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.96 45.55 27.73 68.60 1.90 47.45 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.25 -10.75 6.52 99.48 0.65 -10.11 16 7 C -0.24 -13.69 10.47 84.03 0.88 -12.81 16 8 H 0.06 3.46 8.06 -2.91 -0.02 3.43 16 9 N -0.75 -34.24 5.30 -343.44 -1.82 -36.06 16 10 C 0.12 4.28 5.92 86.38 0.51 4.79 16 11 C 0.11 2.69 3.09 30.59 0.09 2.78 16 12 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 13 O -0.56 -13.90 13.03 -148.98 -1.94 -15.84 16 14 C 0.10 2.23 5.31 86.38 0.46 2.69 16 15 N -0.71 -12.64 5.50 -463.05 -2.55 -15.19 16 16 C 0.51 10.49 7.82 87.66 0.69 11.18 16 17 O -0.58 -17.79 16.03 -3.05 -0.05 -17.84 16 18 C -0.09 -1.16 5.83 29.10 0.17 -0.99 16 19 C -0.11 -1.95 4.37 -19.89 -0.09 -2.03 16 20 C -0.08 -1.57 9.70 22.22 0.22 -1.36 16 21 C -0.16 -3.41 9.94 22.42 0.22 -3.19 16 22 C 0.11 2.35 6.47 22.52 0.15 2.50 16 23 C -0.17 -3.22 5.75 -19.75 -0.11 -3.34 16 24 C -0.08 -1.49 9.32 22.30 0.21 -1.28 16 25 C -0.08 -1.02 5.86 29.90 0.18 -0.85 16 26 C -0.15 -1.46 6.20 30.76 0.19 -1.27 16 27 C 0.05 0.60 7.02 72.12 0.51 1.11 16 28 O -0.34 -6.66 10.27 -91.79 -0.94 -7.60 16 29 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.37 16.27 5.41 -92.70 -0.50 15.77 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.39 7.82 9.04 -74.06 -0.67 7.15 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.42 5.35 8.47 -92.71 -0.79 4.57 16 37 H 0.13 1.00 8.09 -2.39 -0.02 0.98 16 38 H 0.13 1.00 8.09 -2.39 -0.02 0.98 16 39 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 40 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 45 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -80.31 390.34 -1.38 -81.69 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: -1.01 Total: 31.57 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.73 Total: -5.34 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -4.07 Total: -114.08 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -2.93 Total: -41.28 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Total: -80.31 -1.38 -81.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732645772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.372 kcal (2) G-P(sol) polarization free energy of solvation -80.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.27 seconds