Wall clock time and date at job start Tue Mar 31 2020 19:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47013 * 2 1 4 4 N 1.46500 * 109.47224 * 240.00289 * 2 1 3 5 5 C 1.34780 * 119.99883 * 84.99598 * 4 2 1 6 6 N 1.34776 * 119.99988 * 180.27725 * 5 4 2 7 7 O 1.21592 * 120.00031 * 0.02562 * 5 4 2 8 8 C 1.50700 * 109.47386 * 120.00317 * 2 1 3 9 9 O 1.21283 * 119.99847 * 119.99734 * 8 2 1 10 10 N 1.34773 * 119.99798 * 300.00192 * 8 2 1 11 11 C 1.46501 * 119.99899 * 179.97438 * 10 8 2 12 12 C 1.53003 * 109.47517 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.49412 * 54.99652 * 12 11 10 14 14 C 1.53191 * 109.49325 * 294.93904 * 12 11 10 15 15 N 1.46927 * 108.77609 * 185.41166 * 14 12 11 16 16 C 1.36936 * 120.63291 * 233.63221 * 15 14 12 17 17 H 1.07995 * 120.00404 * 151.82073 * 16 15 14 18 18 C 1.38815 * 119.99669 * 331.82009 * 16 15 14 19 19 N 1.31618 * 120.00230 * 343.06859 * 18 16 15 20 20 Si 1.86805 * 119.99978 * 163.07083 * 18 16 15 21 21 H 1.48501 * 109.46772 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47049 * 119.99881 * 20 18 16 23 23 H 1.48494 * 109.46991 * 240.00080 * 20 18 16 24 24 C 1.46932 * 118.73980 * 53.60300 * 15 14 12 25 25 C 1.53199 * 108.77291 * 306.39449 * 24 15 14 26 26 C 1.53036 * 109.50172 * 175.06438 * 12 11 10 27 27 F 1.39900 * 109.45958 * 301.33667 * 26 12 11 28 28 F 1.39897 * 109.45849 * 61.29720 * 26 12 11 29 29 H 1.09002 * 109.47029 * 299.99296 * 1 2 3 30 30 H 1.08993 * 109.47210 * 59.99757 * 1 2 3 31 31 H 1.08999 * 109.46811 * 179.97438 * 1 2 3 32 32 H 0.96997 * 120.00482 * 265.00182 * 4 2 1 33 33 H 0.96996 * 120.00083 * 179.72426 * 6 5 4 34 34 H 0.97007 * 120.00244 * 359.72668 * 6 5 4 35 35 H 0.96998 * 120.00033 * 0.02562 * 10 8 2 36 36 H 1.09000 * 109.47337 * 299.99772 * 11 10 8 37 37 H 1.09001 * 109.47262 * 59.99478 * 11 10 8 38 38 H 1.09004 * 109.58660 * 305.19162 * 14 12 11 39 39 H 1.09005 * 109.59047 * 65.62313 * 14 12 11 40 40 H 0.96999 * 120.00262 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.58432 * 66.17839 * 24 15 14 42 42 H 1.08997 * 109.58696 * 186.46556 * 24 15 14 43 43 H 1.09004 * 109.49539 * 174.58186 * 25 24 15 44 44 H 1.08997 * 109.50252 * 294.64769 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 7 2.5910 -0.6547 -3.4590 7 8 1.8582 1.1617 -2.4116 8 6 2.0324 -0.7105 1.2304 9 8 2.7297 -1.6966 1.1190 10 7 1.7068 -0.2501 2.4545 11 6 2.1947 -0.9411 3.6506 12 6 1.6843 -0.2203 4.9000 13 1 0.5980 -0.1418 4.8564 14 6 2.2960 1.1827 4.9665 15 7 1.9002 1.8115 6.2341 16 6 1.2978 3.0412 6.2447 17 1 0.6210 3.3041 7.0441 18 6 1.5572 3.9499 5.2278 19 7 2.6057 3.7850 4.4495 20 14 0.4181 5.4067 4.9641 21 1 -0.6784 5.3652 5.9648 22 1 1.1841 6.6690 5.1220 23 1 -0.1567 5.3443 3.5963 24 6 2.1625 1.0956 7.4901 25 6 1.5522 -0.3064 7.3951 26 6 2.0898 -1.0097 6.1467 27 9 1.5583 -2.3017 6.0736 28 9 3.4850 -1.0833 6.2184 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 -1.1528 33 1 2.6798 -0.1718 -4.2955 34 1 2.8217 -1.5959 -3.4156 35 1 1.1488 0.5383 2.5435 36 1 1.8310 -1.9686 3.6505 37 1 3.2847 -0.9415 3.6507 38 1 3.3826 1.1102 4.9183 39 1 1.9301 1.7809 4.1320 40 1 2.7867 4.4198 3.7388 41 1 3.2381 1.0159 7.6475 42 1 1.7107 1.6376 8.3208 43 1 1.8219 -0.8813 8.2811 44 1 0.4671 -0.2272 7.3293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733477680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:28 Heat of formation + Delta-G solvation = -153.187494 kcal Electronic energy + Delta-G solvation = -30419.708852 eV Core-core repulsion = 25850.101542 eV Total energy + Delta-G solvation = -4569.607310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.57339 -46.52491 -40.44871 -39.26886 -37.39703 -35.15569 -34.82651 -33.84989 -32.81443 -31.49454 -29.95890 -29.82504 -26.05718 -25.23738 -24.28258 -22.53823 -21.58894 -21.08866 -20.26633 -19.59319 -18.80674 -17.80773 -17.18711 -16.85853 -16.49334 -16.22436 -15.76602 -15.54581 -15.45009 -15.10854 -14.87810 -14.58924 -14.19414 -14.07950 -13.65888 -13.53552 -13.30091 -13.19296 -12.97188 -12.84664 -12.54965 -12.42543 -12.27129 -11.80571 -11.71189 -11.68509 -11.54172 -11.23373 -10.87490 -10.63036 -10.52085 -10.43790 -10.09395 -9.97380 -9.93300 -9.85636 -9.68457 -9.21704 -8.94259 -8.66761 -6.93417 -5.97494 -3.42462 2.56485 2.61218 3.08172 3.27700 3.31733 3.37359 3.38791 4.18612 4.32285 4.35028 4.52332 4.63972 4.74153 4.90480 4.97270 5.10502 5.15544 5.29670 5.38548 5.45945 5.52066 5.66941 5.76285 5.86132 5.96085 6.02217 6.03267 6.17055 6.27113 6.32817 6.44672 6.47095 6.55630 6.70065 6.74526 6.96426 7.32954 7.53430 7.63864 7.81464 8.19550 8.22586 8.48485 8.99375 9.61234 10.17050 11.11367 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.009901 B = 0.004119 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.329946 B = 6795.688189 C = 9033.806017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 H 0.119 0.881 4 N -0.727 5.727 5 C 0.708 3.292 6 N -0.867 5.867 7 O -0.593 6.593 8 C 0.513 3.487 9 O -0.545 6.545 10 N -0.710 5.710 11 C 0.129 3.871 12 C -0.165 4.165 13 H 0.099 0.901 14 C 0.178 3.822 15 N -0.591 5.591 16 C -0.261 4.261 17 H 0.070 0.930 18 C 0.007 3.993 19 N -0.899 5.899 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.286 1.286 24 C 0.143 3.857 25 C -0.171 4.171 26 C 0.300 3.700 27 F -0.213 7.213 28 F -0.199 7.199 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.405 0.595 33 H 0.415 0.585 34 H 0.397 0.603 35 H 0.409 0.591 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.101 0.899 40 H 0.257 0.743 41 H 0.031 0.969 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 -11.293 -7.458 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 H 0.137 0.863 4 N -0.384 5.384 5 C 0.406 3.594 6 N -0.435 5.435 7 O -0.471 6.471 8 C 0.298 3.702 9 O -0.423 6.423 10 N -0.361 5.361 11 C 0.005 3.995 12 C -0.187 4.187 13 H 0.117 0.883 14 C 0.052 3.948 15 N -0.313 5.313 16 C -0.390 4.390 17 H 0.088 0.912 18 C -0.192 4.192 19 N -0.542 5.542 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.213 1.213 24 C 0.017 3.983 25 C -0.211 4.211 26 C 0.263 3.737 27 F -0.194 7.194 28 F -0.180 7.180 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.241 0.759 33 H 0.247 0.753 34 H 0.225 0.775 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.088 -10.888 -7.500 13.577 hybrid contribution -0.355 0.222 -0.402 0.581 sum -3.443 -10.666 -7.902 13.713 Atomic orbital electron populations 1.22159 0.92851 1.02908 1.03950 1.20609 0.95498 0.98126 0.82474 0.86302 1.44761 1.71341 1.14340 1.07994 1.15876 0.78015 0.84866 0.80606 1.42931 1.73829 1.14932 1.11828 1.90993 1.57193 1.14230 1.84680 1.20477 0.80270 0.84616 0.84818 1.90673 1.38255 1.26665 1.86715 1.45835 1.53149 1.32113 1.05049 1.21294 1.00097 0.95473 0.82684 1.23207 1.03710 1.00552 0.91183 0.88253 1.20887 0.96594 0.86050 0.91292 1.44090 1.70067 1.17971 0.99151 1.19221 1.19425 0.90250 1.10150 0.91193 1.25088 0.96514 0.97474 1.00118 1.70014 1.25064 1.37622 1.21504 0.86236 0.80367 0.82323 0.77922 1.20166 1.21571 1.21264 1.20918 0.97414 0.89023 0.90995 1.23050 1.03001 1.00089 0.94911 1.21008 0.75008 0.78724 0.98926 1.92956 1.86293 1.42624 1.97571 1.92968 1.31091 1.96439 1.97517 0.90580 0.90689 0.91917 0.75865 0.75346 0.77507 0.75506 0.91207 0.90658 0.94827 0.88104 0.93276 0.95111 0.91244 0.90429 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.38 37.16 0.35 -1.38 16 2 C 0.14 1.82 2.98 -69.08 -0.21 1.62 16 3 H 0.12 1.69 7.58 -51.93 -0.39 1.30 16 4 N -0.73 -8.48 4.96 -59.81 -0.30 -8.78 16 5 C 0.71 8.86 8.80 -86.92 -0.77 8.09 16 6 N -0.87 -6.72 8.88 27.64 0.25 -6.47 16 7 O -0.59 -9.98 16.84 5.29 0.09 -9.89 16 8 C 0.51 7.51 7.22 -10.99 -0.08 7.43 16 9 O -0.55 -9.28 15.84 5.56 0.09 -9.19 16 10 N -0.71 -10.34 5.22 -60.29 -0.31 -10.66 16 11 C 0.13 2.06 4.83 -4.04 -0.02 2.05 16 12 C -0.17 -2.81 2.03 -90.50 -0.18 -2.99 16 13 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 14 C 0.18 3.76 4.19 -3.71 -0.02 3.75 16 15 N -0.59 -13.32 2.99 -172.31 -0.52 -13.84 16 16 C -0.26 -6.50 9.58 -15.06 -0.14 -6.64 16 17 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 18 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 19 N -0.90 -24.03 11.20 55.49 0.62 -23.41 16 20 Si 0.90 20.13 29.59 -169.99 -5.03 15.10 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.14 2.73 6.31 -3.70 -0.02 2.71 16 25 C -0.17 -2.73 5.62 -26.61 -0.15 -2.88 16 26 C 0.30 5.10 1.63 -26.69 -0.04 5.06 16 27 F -0.21 -3.53 16.41 2.25 0.04 -3.49 16 28 F -0.20 -3.71 15.73 2.25 0.04 -3.67 16 29 H 0.08 0.76 7.56 -51.93 -0.39 0.36 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.41 4.18 7.80 -40.82 -0.32 3.86 16 33 H 0.41 2.70 8.93 -40.82 -0.36 2.34 16 34 H 0.40 1.93 8.84 -40.82 -0.36 1.56 16 35 H 0.41 5.63 7.12 -40.82 -0.29 5.34 16 36 H 0.07 1.10 7.63 -51.93 -0.40 0.71 16 37 H 0.08 1.33 7.97 -51.93 -0.41 0.92 16 38 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 39 H 0.10 2.29 5.26 -51.93 -0.27 2.01 16 40 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.03 0.61 7.92 -51.93 -0.41 0.20 16 42 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -31.83 365.85 -7.00 -38.83 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -6.10 Total: 13.05 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: -1.37 Total: 16.91 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.26 Total: -63.15 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.18 Total: -19.09 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.07 Total: -7.17 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.83 -7.00 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733477680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.360 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds