Wall clock time and date at job start Tue Mar 31 2020 19:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47013 * 2 1 4 4 N 1.46500 * 109.47224 * 240.00289 * 2 1 3 5 5 C 1.34780 * 119.99883 * 84.99598 * 4 2 1 6 6 N 1.34776 * 119.99988 * 180.27725 * 5 4 2 7 7 O 1.21592 * 120.00031 * 0.02562 * 5 4 2 8 8 C 1.50700 * 109.47386 * 120.00317 * 2 1 3 9 9 O 1.21283 * 119.99847 * 119.99734 * 8 2 1 10 10 N 1.34773 * 119.99798 * 300.00192 * 8 2 1 11 11 C 1.46501 * 119.99899 * 179.97438 * 10 8 2 12 12 C 1.53003 * 109.47517 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.49412 * 54.99652 * 12 11 10 14 14 C 1.53191 * 109.49325 * 294.93904 * 12 11 10 15 15 N 1.46927 * 108.77609 * 185.41166 * 14 12 11 16 16 C 1.36936 * 120.63291 * 233.63221 * 15 14 12 17 17 H 1.07995 * 120.00404 * 151.82073 * 16 15 14 18 18 C 1.38815 * 119.99669 * 331.82009 * 16 15 14 19 19 N 1.31618 * 120.00230 * 343.06859 * 18 16 15 20 20 Si 1.86805 * 119.99978 * 163.07083 * 18 16 15 21 21 H 1.48501 * 109.46772 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47049 * 119.99881 * 20 18 16 23 23 H 1.48494 * 109.46991 * 240.00080 * 20 18 16 24 24 C 1.46932 * 118.73980 * 53.60300 * 15 14 12 25 25 C 1.53199 * 108.77291 * 306.39449 * 24 15 14 26 26 C 1.53036 * 109.50172 * 175.06438 * 12 11 10 27 27 F 1.39900 * 109.45958 * 301.33667 * 26 12 11 28 28 F 1.39897 * 109.45849 * 61.29720 * 26 12 11 29 29 H 1.09002 * 109.47029 * 299.99296 * 1 2 3 30 30 H 1.08993 * 109.47210 * 59.99757 * 1 2 3 31 31 H 1.08999 * 109.46811 * 179.97438 * 1 2 3 32 32 H 0.96997 * 120.00482 * 265.00182 * 4 2 1 33 33 H 0.96996 * 120.00083 * 179.72426 * 6 5 4 34 34 H 0.97007 * 120.00244 * 359.72668 * 6 5 4 35 35 H 0.96998 * 120.00033 * 0.02562 * 10 8 2 36 36 H 1.09000 * 109.47337 * 299.99772 * 11 10 8 37 37 H 1.09001 * 109.47262 * 59.99478 * 11 10 8 38 38 H 1.09004 * 109.58660 * 305.19162 * 14 12 11 39 39 H 1.09005 * 109.59047 * 65.62313 * 14 12 11 40 40 H 0.96999 * 120.00262 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.58432 * 66.17839 * 24 15 14 42 42 H 1.08997 * 109.58696 * 186.46556 * 24 15 14 43 43 H 1.09004 * 109.49539 * 174.58186 * 25 24 15 44 44 H 1.08997 * 109.50252 * 294.64769 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 7 2.5910 -0.6547 -3.4590 7 8 1.8582 1.1617 -2.4116 8 6 2.0324 -0.7105 1.2304 9 8 2.7297 -1.6966 1.1190 10 7 1.7068 -0.2501 2.4545 11 6 2.1947 -0.9411 3.6506 12 6 1.6843 -0.2203 4.9000 13 1 0.5980 -0.1418 4.8564 14 6 2.2960 1.1827 4.9665 15 7 1.9002 1.8115 6.2341 16 6 1.2978 3.0412 6.2447 17 1 0.6210 3.3041 7.0441 18 6 1.5572 3.9499 5.2278 19 7 2.6057 3.7850 4.4495 20 14 0.4181 5.4067 4.9641 21 1 -0.6784 5.3652 5.9648 22 1 1.1841 6.6690 5.1220 23 1 -0.1567 5.3443 3.5963 24 6 2.1625 1.0956 7.4901 25 6 1.5522 -0.3064 7.3951 26 6 2.0898 -1.0097 6.1467 27 9 1.5583 -2.3017 6.0736 28 9 3.4850 -1.0833 6.2184 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 -1.1528 33 1 2.6798 -0.1718 -4.2955 34 1 2.8217 -1.5959 -3.4156 35 1 1.1488 0.5383 2.5435 36 1 1.8310 -1.9686 3.6505 37 1 3.2847 -0.9415 3.6507 38 1 3.3826 1.1102 4.9183 39 1 1.9301 1.7809 4.1320 40 1 2.7867 4.4198 3.7388 41 1 3.2381 1.0159 7.6475 42 1 1.7107 1.6376 8.3208 43 1 1.8219 -0.8813 8.2811 44 1 0.4671 -0.2272 7.3293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733477680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:27 Heat of formation + Delta-G solvation = -178.089730 kcal Electronic energy + Delta-G solvation = -30420.788694 eV Core-core repulsion = 25850.101542 eV Total energy + Delta-G solvation = -4570.687152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.96563 -47.92081 -41.55170 -40.40229 -38.94218 -36.43252 -36.00865 -34.76829 -34.50694 -32.82761 -31.53364 -30.97445 -27.48474 -26.92440 -25.40785 -24.07844 -22.97909 -22.21195 -21.45238 -21.05562 -19.82307 -19.00734 -18.60231 -18.28838 -17.78945 -17.44277 -17.02275 -16.80373 -16.76587 -16.62341 -16.15285 -15.71569 -15.53199 -15.39543 -15.24011 -14.78872 -14.71934 -14.56322 -14.30830 -14.24465 -13.80982 -13.70665 -13.37618 -13.27905 -13.19209 -13.02707 -12.98585 -12.68103 -12.62828 -12.19562 -12.11650 -11.85840 -11.61622 -11.55169 -11.33928 -11.01600 -10.74884 -10.57988 -10.25217 -10.12859 -8.77572 -7.89410 -5.36037 1.41026 1.50378 1.55517 1.55670 1.63570 2.09392 2.21661 2.51507 2.83090 3.16598 3.24524 3.30702 3.46754 3.57169 3.60035 3.65747 3.95852 4.00978 4.09042 4.10911 4.32573 4.48598 4.56542 4.62446 4.69609 4.75365 4.77040 4.91401 4.98261 5.13090 5.15740 5.22682 5.27190 5.30042 5.59593 5.68568 5.81277 6.00661 6.33427 6.35798 6.96776 7.02598 7.11084 7.59230 7.78178 8.30909 9.17830 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.009901 B = 0.004119 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.329946 B = 6795.688189 C = 9033.806017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.102 0.898 4 N -0.721 5.721 5 C 0.704 3.296 6 N -0.844 5.844 7 O -0.640 6.640 8 C 0.517 3.483 9 O -0.568 6.568 10 N -0.706 5.706 11 C 0.137 3.863 12 C -0.151 4.151 13 H 0.116 0.884 14 C 0.191 3.809 15 N -0.608 5.608 16 C -0.263 4.263 17 H 0.075 0.925 18 C -0.039 4.039 19 N -0.931 5.931 20 Si 0.960 3.040 21 H -0.265 1.265 22 H -0.301 1.301 23 H -0.287 1.287 24 C 0.139 3.861 25 C -0.159 4.159 26 C 0.298 3.702 27 F -0.206 7.206 28 F -0.211 7.211 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.413 0.587 33 H 0.423 0.577 34 H 0.414 0.586 35 H 0.413 0.587 36 H 0.080 0.920 37 H 0.054 0.946 38 H -0.002 1.002 39 H 0.083 0.917 40 H 0.251 0.749 41 H 0.017 0.983 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 -12.559 -7.207 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.036 3.964 3 H 0.120 0.880 4 N -0.379 5.379 5 C 0.401 3.599 6 N -0.413 5.413 7 O -0.522 6.522 8 C 0.303 3.697 9 O -0.448 6.448 10 N -0.358 5.358 11 C 0.012 3.988 12 C -0.172 4.172 13 H 0.134 0.866 14 C 0.064 3.936 15 N -0.330 5.330 16 C -0.392 4.392 17 H 0.093 0.907 18 C -0.235 4.235 19 N -0.576 5.576 20 Si 0.789 3.211 21 H -0.189 1.189 22 H -0.228 1.228 23 H -0.214 1.214 24 C 0.013 3.987 25 C -0.199 4.199 26 C 0.261 3.739 27 F -0.187 7.187 28 F -0.192 7.192 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.251 0.749 33 H 0.256 0.744 34 H 0.245 0.755 35 H 0.251 0.749 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.016 0.984 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.098 0.902 43 H 0.123 0.877 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.693 -12.219 -7.247 14.962 hybrid contribution 0.222 0.569 -0.438 0.751 sum -4.471 -11.650 -7.685 14.655 Atomic orbital electron populations 1.22109 0.90998 1.03809 1.04137 1.20530 0.96860 0.96946 0.82022 0.87974 1.44669 1.71183 1.14560 1.07512 1.16080 0.77969 0.84383 0.81435 1.42718 1.72085 1.15731 1.10788 1.90963 1.59352 1.16372 1.85472 1.20750 0.79613 0.84210 0.85141 1.90658 1.39263 1.27816 1.87044 1.45793 1.53049 1.32131 1.04792 1.21131 0.98860 0.95933 0.82853 1.22985 1.04210 0.98039 0.91968 0.86587 1.20565 0.94536 0.87981 0.90484 1.44348 1.70072 1.17922 1.00666 1.19538 1.18925 0.90974 1.09799 0.90702 1.25710 0.97629 0.99785 1.00362 1.70160 1.26765 1.38487 1.22183 0.85322 0.78860 0.79081 0.77828 1.18889 1.22843 1.21360 1.21032 0.97045 0.90707 0.89888 1.22946 1.03540 0.97932 0.95447 1.21090 0.74466 0.79062 0.99251 1.92970 1.86085 1.42058 1.97569 1.92954 1.32203 1.96508 1.97557 0.89688 0.91194 0.90596 0.74907 0.74358 0.75508 0.74950 0.90215 0.92739 0.98420 0.89873 0.93975 0.96448 0.90211 0.87679 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.38 71.98 0.68 -2.45 16 2 C 0.15 3.71 2.98 44.25 0.13 3.84 16 3 H 0.10 2.99 7.58 -2.39 -0.02 2.97 16 4 N -0.72 -16.35 4.96 -461.40 -2.29 -18.63 16 5 C 0.70 17.16 8.80 179.05 1.58 18.74 16 6 N -0.84 -11.85 8.88 -184.74 -1.64 -13.49 16 7 O -0.64 -21.68 16.84 -4.00 -0.07 -21.75 16 8 C 0.52 14.94 7.22 87.66 0.63 15.57 16 9 O -0.57 -19.06 15.84 -3.04 -0.05 -19.11 16 10 N -0.71 -20.34 5.22 -463.05 -2.42 -22.75 16 11 C 0.14 4.32 4.83 86.38 0.42 4.74 16 12 C -0.15 -4.98 2.03 -10.72 -0.02 -5.00 16 13 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 14 C 0.19 8.13 4.19 86.36 0.36 8.49 16 15 N -0.61 -27.14 2.99 -699.06 -2.09 -29.24 16 16 C -0.26 -12.89 9.58 84.03 0.81 -12.09 16 17 H 0.08 3.55 7.88 -2.91 -0.02 3.53 16 18 C -0.04 -1.96 4.92 84.86 0.42 -1.55 16 19 N -0.93 -50.84 11.20 21.65 0.24 -50.60 16 20 Si 0.96 41.37 29.59 68.60 2.03 43.40 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 24 C 0.14 5.12 6.31 86.36 0.55 5.66 16 25 C -0.16 -4.65 5.62 30.67 0.17 -4.48 16 26 C 0.30 9.59 1.63 30.62 0.05 9.64 16 27 F -0.21 -6.25 16.41 44.97 0.74 -5.51 16 28 F -0.21 -7.72 15.73 44.97 0.71 -7.01 16 29 H 0.08 1.58 7.56 -2.39 -0.02 1.56 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.41 8.04 7.80 -92.71 -0.72 7.32 16 33 H 0.42 4.89 8.93 -92.71 -0.83 4.07 16 34 H 0.41 3.18 8.84 -92.70 -0.82 2.36 16 35 H 0.41 11.27 7.12 -92.71 -0.66 10.61 16 36 H 0.08 2.39 7.63 -2.39 -0.02 2.38 16 37 H 0.05 1.96 7.97 -2.39 -0.02 1.94 16 38 H 0.00 -0.11 7.92 -2.38 -0.02 -0.13 16 39 H 0.08 3.85 5.26 -2.38 -0.01 3.83 16 40 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 41 H 0.02 0.69 7.92 -2.39 -0.02 0.67 16 42 H 0.08 2.74 7.93 -2.39 -0.02 2.73 16 43 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -68.76 365.85 -1.02 -69.78 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -1.94 Total: 33.79 kcal Atomic # 6 Polarization: 35.36 SS G_CDS: 5.76 Total: 41.12 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -8.20 Total: -134.71 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.12 Total: -40.86 kcal Atomic # 9 Polarization: -13.97 SS G_CDS: 1.45 Total: -12.52 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -68.76 -1.02 -69.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733477680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.309 kcal (2) G-P(sol) polarization free energy of solvation -68.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds