Wall clock time and date at job start Tue Mar 31 2020 19:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46910 * 2 1 4 4 N 1.46495 * 109.47036 * 240.00298 * 2 1 3 5 5 C 1.34770 * 120.00314 * 84.99567 * 4 2 1 6 6 N 1.34777 * 120.00033 * 179.97438 * 5 4 2 7 7 O 1.21585 * 120.00076 * 0.02562 * 5 4 2 8 8 C 1.50702 * 109.47443 * 119.99634 * 2 1 3 9 9 O 1.21279 * 119.99568 * 119.99969 * 8 2 1 10 10 N 1.34777 * 120.00119 * 300.00081 * 8 2 1 11 11 C 1.46497 * 120.00304 * 179.97438 * 10 8 2 12 12 C 1.52998 * 109.47533 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.49410 * 305.06498 * 12 11 10 14 14 C 1.53618 * 109.43308 * 65.28782 * 12 11 10 15 15 N 1.46923 * 108.54372 * 174.72588 * 14 12 11 16 16 C 1.36940 * 120.63005 * 126.36569 * 15 14 12 17 17 H 1.08003 * 120.00249 * 331.78100 * 16 15 14 18 18 C 1.38815 * 120.00013 * 151.76983 * 16 15 14 19 19 N 1.31617 * 120.00138 * 335.35859 * 18 16 15 20 20 Si 1.86800 * 119.99966 * 155.34778 * 18 16 15 21 21 H 1.48498 * 109.47028 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47108 * 300.00617 * 20 18 16 23 23 H 1.48495 * 109.47028 * 60.00290 * 20 18 16 24 24 C 1.46926 * 118.74097 * 306.09607 * 15 14 12 25 25 C 1.53189 * 108.77454 * 53.85812 * 24 15 14 26 26 C 1.53039 * 109.49774 * 185.00259 * 12 11 10 27 27 F 1.39904 * 109.45964 * 58.65745 * 26 12 11 28 28 F 1.39904 * 109.45762 * 298.70162 * 26 12 11 29 29 H 1.09005 * 109.46769 * 299.99708 * 1 2 3 30 30 H 1.08992 * 109.47666 * 60.00193 * 1 2 3 31 31 H 1.09006 * 109.47052 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99516 * 264.99227 * 4 2 1 33 33 H 0.97005 * 120.00329 * 0.02562 * 6 5 4 34 34 H 0.97002 * 120.00024 * 180.02562 * 6 5 4 35 35 H 0.97002 * 119.99686 * 0.02562 * 10 8 2 36 36 H 1.09000 * 109.46983 * 59.99727 * 11 10 8 37 37 H 1.08999 * 109.46886 * 300.00437 * 11 10 8 38 38 H 1.09005 * 109.74059 * 54.98787 * 14 12 11 39 39 H 1.09008 * 109.66683 * 294.42025 * 14 12 11 40 40 H 0.97004 * 119.99413 * 354.23471 * 19 18 16 41 41 H 1.08997 * 109.58911 * 173.64199 * 24 15 14 42 42 H 1.09000 * 109.58510 * 294.07314 * 24 15 14 43 43 H 1.09004 * 109.49994 * 65.31617 * 25 24 15 44 44 H 1.08997 * 109.50030 * 185.41799 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0182 -2.3571 6 7 2.5967 -0.6534 -3.4574 7 8 1.8582 1.1616 -2.4116 8 6 2.0324 -0.7103 1.2305 9 8 2.7297 -1.6964 1.1192 10 7 1.7069 -0.2498 2.4546 11 6 2.1948 -0.9406 3.6508 12 6 1.6844 -0.2197 4.9000 13 1 1.9716 0.8309 4.8565 14 6 0.1540 -0.3348 4.9672 15 7 -0.3035 0.2515 6.2343 16 6 -1.2641 1.2274 6.2449 17 1 -1.3726 1.8876 5.3970 18 6 -2.0985 1.3681 7.3454 19 7 -2.3240 0.3403 8.1359 20 14 -2.9010 3.0163 7.7043 21 1 -3.7376 2.9038 8.9261 22 1 -1.8494 4.0428 7.9178 23 1 -3.7534 3.4126 6.5548 24 6 0.2849 -0.2334 7.4903 25 6 1.8098 -0.1233 7.3952 26 6 2.2940 -0.8646 6.1469 27 9 3.6893 -0.7929 6.0739 28 9 1.8995 -2.2050 6.2184 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6317 -1.1526 33 1 2.8274 -1.5946 -3.4139 34 1 2.6896 -0.1695 -4.2929 35 1 1.1489 0.5386 2.5435 36 1 3.2848 -0.9411 3.6509 37 1 1.8311 -1.9682 3.6506 38 1 -0.1385 -1.3839 4.9233 39 1 -0.2916 0.2062 4.1323 40 1 -1.9759 -0.5351 7.9045 41 1 -0.0742 0.3745 8.3207 42 1 0.0028 -1.2744 7.6479 43 1 2.0954 0.9265 7.3285 44 1 2.2627 -0.5684 8.2811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733477690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:05 Heat of formation + Delta-G solvation = -155.409386 kcal Electronic energy + Delta-G solvation = -30070.536316 eV Core-core repulsion = 25500.832657 eV Total energy + Delta-G solvation = -4569.703658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 39.62 seconds Orbital eigenvalues (eV) -48.68759 -46.63877 -40.64564 -39.47073 -37.63213 -35.43220 -35.07563 -34.00190 -32.95737 -31.32780 -30.37062 -29.83800 -26.08532 -25.11147 -24.46638 -22.66830 -21.67367 -21.27217 -20.48675 -19.67571 -18.99085 -18.01404 -17.61862 -16.97624 -16.69897 -16.42748 -15.97152 -15.79121 -15.62133 -15.25068 -14.89135 -14.61962 -14.37508 -13.94977 -13.82013 -13.69960 -13.49728 -13.41630 -13.25873 -12.97339 -12.79315 -12.55521 -12.25414 -12.09461 -11.91312 -11.80126 -11.69575 -10.98417 -10.84607 -10.82323 -10.60461 -10.55199 -10.17436 -10.11893 -10.00553 -9.86665 -9.51915 -9.38863 -9.20299 -8.55641 -7.15655 -6.24877 -3.44823 2.36274 2.40525 2.91201 3.09994 3.40949 3.44021 3.62078 4.04310 4.17462 4.36277 4.39579 4.50670 4.54815 4.73866 4.80788 4.90214 5.00491 5.15985 5.29380 5.35036 5.37902 5.47700 5.52983 5.72424 5.82328 5.92864 5.95072 6.06201 6.09953 6.14855 6.19443 6.23648 6.39672 6.48072 6.60711 6.71617 6.91257 7.27131 7.65589 7.79031 7.95737 8.32678 8.37482 8.87477 9.62955 10.03678 11.04233 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.003157 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.755712 B = 8866.337888 C =10565.419546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.117 0.883 4 N -0.728 5.728 5 C 0.710 3.290 6 N -0.866 5.866 7 O -0.595 6.595 8 C 0.512 3.488 9 O -0.540 6.540 10 N -0.715 5.715 11 C 0.125 3.875 12 C -0.156 4.156 13 H 0.104 0.896 14 C 0.155 3.845 15 N -0.597 5.597 16 C -0.359 4.359 17 H 0.061 0.939 18 C -0.019 4.019 19 N -0.910 5.910 20 Si 1.065 2.935 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.149 3.851 25 C -0.174 4.174 26 C 0.301 3.699 27 F -0.211 7.211 28 F -0.199 7.199 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.406 0.594 33 H 0.398 0.602 34 H 0.415 0.585 35 H 0.407 0.593 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.032 0.968 39 H 0.068 0.932 40 H 0.270 0.730 41 H 0.093 0.907 42 H 0.031 0.969 43 H 0.090 0.910 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.084 -2.857 -14.866 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.134 0.866 4 N -0.385 5.385 5 C 0.408 3.592 6 N -0.434 5.434 7 O -0.473 6.473 8 C 0.297 3.703 9 O -0.417 6.417 10 N -0.367 5.367 11 C 0.001 3.999 12 C -0.178 4.178 13 H 0.122 0.878 14 C 0.028 3.972 15 N -0.320 5.320 16 C -0.488 4.488 17 H 0.078 0.922 18 C -0.222 4.222 19 N -0.549 5.549 20 Si 0.894 3.106 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.218 1.218 24 C 0.023 3.977 25 C -0.214 4.214 26 C 0.265 3.735 27 F -0.192 7.192 28 F -0.180 7.180 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.243 0.757 33 H 0.226 0.774 34 H 0.247 0.753 35 H 0.243 0.757 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.049 0.951 43 H 0.108 0.892 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.320 -1.764 -13.702 16.127 hybrid contribution 1.210 -1.352 -1.377 2.278 sum 9.530 -3.116 -15.079 18.108 Atomic orbital electron populations 1.22183 0.92514 1.03343 1.04037 1.20593 0.95713 0.97764 0.82445 0.86581 1.44773 1.71360 1.14446 1.07966 1.15856 0.77960 0.84844 0.80586 1.42937 1.73460 1.15017 1.12020 1.90980 1.57382 1.14278 1.84691 1.20547 0.80248 0.84720 0.84792 1.90693 1.38047 1.26362 1.86648 1.45861 1.53388 1.32258 1.05174 1.21351 0.99429 0.96633 0.82457 1.23059 1.01667 1.01435 0.91626 0.87769 1.20996 0.87782 0.97363 0.91033 1.44174 1.44219 1.44144 0.99414 1.19947 1.12194 1.09103 1.07528 0.92158 1.25928 0.95787 1.04283 0.96184 1.70806 1.42386 1.00275 1.41466 0.83519 0.76057 0.74696 0.76282 1.21017 1.21890 1.21810 1.21009 0.86805 0.98506 0.91375 1.23140 1.02214 1.01343 0.94660 1.20983 0.74887 0.78945 0.98727 1.92968 1.32312 1.96373 1.97549 1.92970 1.90576 1.36974 1.97515 0.90483 0.90564 0.91670 0.75747 0.77413 0.75272 0.75744 0.90808 0.90501 0.95058 0.91356 0.91847 0.88830 0.95107 0.89157 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.38 37.16 0.35 -1.18 16 2 C 0.14 1.51 2.98 -69.08 -0.21 1.31 16 3 H 0.12 1.25 7.58 -51.93 -0.39 0.86 16 4 N -0.73 -7.17 4.96 -59.82 -0.30 -7.47 16 5 C 0.71 7.59 8.80 -86.92 -0.77 6.83 16 6 N -0.87 -5.45 8.88 27.63 0.25 -5.20 16 7 O -0.60 -8.77 16.84 5.29 0.09 -8.68 16 8 C 0.51 6.30 7.22 -10.98 -0.08 6.22 16 9 O -0.54 -8.18 15.84 5.56 0.09 -8.09 16 10 N -0.71 -8.46 5.23 -60.30 -0.32 -8.77 16 11 C 0.13 1.75 4.83 -4.04 -0.02 1.73 16 12 C -0.16 -2.41 2.04 -90.28 -0.18 -2.59 16 13 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 14 C 0.16 2.83 5.42 -3.49 -0.02 2.81 16 15 N -0.60 -13.33 2.84 -172.05 -0.49 -13.82 16 16 C -0.36 -9.04 9.49 -15.06 -0.14 -9.18 16 17 H 0.06 1.50 7.94 -52.48 -0.42 1.08 16 18 C -0.02 -0.49 4.69 -17.43 -0.08 -0.58 16 19 N -0.91 -25.55 12.41 55.49 0.69 -24.86 16 20 Si 1.07 23.48 29.98 -169.99 -5.10 18.38 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.15 3.19 4.48 -3.71 -0.02 3.17 16 25 C -0.17 -3.02 5.62 -26.61 -0.15 -3.17 16 26 C 0.30 5.05 1.63 -26.69 -0.04 5.01 16 27 F -0.21 -3.48 16.41 2.25 0.04 -3.44 16 28 F -0.20 -3.61 15.72 2.25 0.04 -3.57 16 29 H 0.08 0.66 7.56 -51.93 -0.39 0.26 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.41 3.59 7.80 -40.82 -0.32 3.27 16 33 H 0.40 1.42 8.84 -40.82 -0.36 1.06 16 34 H 0.42 2.12 8.93 -40.82 -0.36 1.76 16 35 H 0.41 4.16 7.14 -40.82 -0.29 3.87 16 36 H 0.07 1.07 7.63 -51.93 -0.40 0.68 16 37 H 0.08 1.16 7.97 -51.93 -0.41 0.75 16 38 H 0.03 0.61 7.92 -51.93 -0.41 0.20 16 39 H 0.07 1.16 7.16 -51.92 -0.37 0.79 16 40 H 0.27 7.66 6.69 -40.82 -0.27 7.38 16 41 H 0.09 2.23 6.31 -51.93 -0.33 1.90 16 42 H 0.03 0.69 7.64 -51.93 -0.40 0.29 16 43 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 44 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -32.65 364.84 -6.91 -39.56 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.04 Total: 10.11 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: -1.36 Total: 10.36 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.17 Total: -60.13 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.18 Total: -16.77 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 0.07 Total: -7.01 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.10 Total: 18.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.65 -6.91 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733477690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.848 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 39.62 seconds