Wall clock time and date at job start Tue Mar 31 2020 19:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46910 * 2 1 4 4 N 1.46495 * 109.47036 * 240.00298 * 2 1 3 5 5 C 1.34770 * 120.00314 * 84.99567 * 4 2 1 6 6 N 1.34777 * 120.00033 * 179.97438 * 5 4 2 7 7 O 1.21585 * 120.00076 * 0.02562 * 5 4 2 8 8 C 1.50702 * 109.47443 * 119.99634 * 2 1 3 9 9 O 1.21279 * 119.99568 * 119.99969 * 8 2 1 10 10 N 1.34777 * 120.00119 * 300.00081 * 8 2 1 11 11 C 1.46497 * 120.00304 * 179.97438 * 10 8 2 12 12 C 1.52998 * 109.47533 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.49410 * 305.06498 * 12 11 10 14 14 C 1.53618 * 109.43308 * 65.28782 * 12 11 10 15 15 N 1.46923 * 108.54372 * 174.72588 * 14 12 11 16 16 C 1.36940 * 120.63005 * 126.36569 * 15 14 12 17 17 H 1.08003 * 120.00249 * 331.78100 * 16 15 14 18 18 C 1.38815 * 120.00013 * 151.76983 * 16 15 14 19 19 N 1.31617 * 120.00138 * 335.35859 * 18 16 15 20 20 Si 1.86800 * 119.99966 * 155.34778 * 18 16 15 21 21 H 1.48498 * 109.47028 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47108 * 300.00617 * 20 18 16 23 23 H 1.48495 * 109.47028 * 60.00290 * 20 18 16 24 24 C 1.46926 * 118.74097 * 306.09607 * 15 14 12 25 25 C 1.53189 * 108.77454 * 53.85812 * 24 15 14 26 26 C 1.53039 * 109.49774 * 185.00259 * 12 11 10 27 27 F 1.39904 * 109.45964 * 58.65745 * 26 12 11 28 28 F 1.39904 * 109.45762 * 298.70162 * 26 12 11 29 29 H 1.09005 * 109.46769 * 299.99708 * 1 2 3 30 30 H 1.08992 * 109.47666 * 60.00193 * 1 2 3 31 31 H 1.09006 * 109.47052 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99516 * 264.99227 * 4 2 1 33 33 H 0.97005 * 120.00329 * 0.02562 * 6 5 4 34 34 H 0.97002 * 120.00024 * 180.02562 * 6 5 4 35 35 H 0.97002 * 119.99686 * 0.02562 * 10 8 2 36 36 H 1.09000 * 109.46983 * 59.99727 * 11 10 8 37 37 H 1.08999 * 109.46886 * 300.00437 * 11 10 8 38 38 H 1.09005 * 109.74059 * 54.98787 * 14 12 11 39 39 H 1.09008 * 109.66683 * 294.42025 * 14 12 11 40 40 H 0.97004 * 119.99413 * 354.23471 * 19 18 16 41 41 H 1.08997 * 109.58911 * 173.64199 * 24 15 14 42 42 H 1.09000 * 109.58510 * 294.07314 * 24 15 14 43 43 H 1.09004 * 109.49994 * 65.31617 * 25 24 15 44 44 H 1.08997 * 109.50030 * 185.41799 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0182 -2.3571 6 7 2.5967 -0.6534 -3.4574 7 8 1.8582 1.1616 -2.4116 8 6 2.0324 -0.7103 1.2305 9 8 2.7297 -1.6964 1.1192 10 7 1.7069 -0.2498 2.4546 11 6 2.1948 -0.9406 3.6508 12 6 1.6844 -0.2197 4.9000 13 1 1.9716 0.8309 4.8565 14 6 0.1540 -0.3348 4.9672 15 7 -0.3035 0.2515 6.2343 16 6 -1.2641 1.2274 6.2449 17 1 -1.3726 1.8876 5.3970 18 6 -2.0985 1.3681 7.3454 19 7 -2.3240 0.3403 8.1359 20 14 -2.9010 3.0163 7.7043 21 1 -3.7376 2.9038 8.9261 22 1 -1.8494 4.0428 7.9178 23 1 -3.7534 3.4126 6.5548 24 6 0.2849 -0.2334 7.4903 25 6 1.8098 -0.1233 7.3952 26 6 2.2940 -0.8646 6.1469 27 9 3.6893 -0.7929 6.0739 28 9 1.8995 -2.2050 6.2184 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6317 -1.1526 33 1 2.8274 -1.5946 -3.4139 34 1 2.6896 -0.1695 -4.2929 35 1 1.1489 0.5386 2.5435 36 1 3.2848 -0.9411 3.6509 37 1 1.8311 -1.9682 3.6506 38 1 -0.1385 -1.3839 4.9233 39 1 -0.2916 0.2062 4.1323 40 1 -1.9759 -0.5351 7.9045 41 1 -0.0742 0.3745 8.3207 42 1 0.0028 -1.2744 7.6479 43 1 2.0954 0.9265 7.3285 44 1 2.2627 -0.5684 8.2811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733477690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:52 Heat of formation + Delta-G solvation = -180.943415 kcal Electronic energy + Delta-G solvation = -30071.643554 eV Core-core repulsion = 25500.832657 eV Total energy + Delta-G solvation = -4570.810897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 33.07 seconds Orbital eigenvalues (eV) -50.07245 -48.02582 -41.57214 -40.42467 -39.14927 -36.67770 -36.03330 -34.79237 -34.50131 -32.63106 -31.92015 -30.91575 -27.31408 -26.91659 -25.45997 -24.14755 -23.07170 -22.24124 -21.49937 -21.10805 -19.88439 -19.47012 -18.67147 -18.37774 -17.87028 -17.53996 -17.15249 -16.90273 -16.79659 -16.39852 -15.99118 -15.72279 -15.63476 -15.40422 -15.35760 -14.98618 -14.92852 -14.70638 -14.44522 -14.33775 -13.82606 -13.72893 -13.53939 -13.39664 -13.32171 -13.10354 -12.70509 -12.68485 -12.49937 -12.26104 -12.16628 -11.87342 -11.55120 -11.46887 -11.35639 -11.05588 -10.74152 -10.48349 -10.29335 -10.13982 -9.02959 -8.25450 -5.43171 1.38802 1.53504 1.65105 1.70621 1.88909 2.08330 2.18960 2.62415 2.74026 3.05930 3.13171 3.21975 3.41407 3.43799 3.52861 3.62647 3.80005 3.96027 4.00894 4.08913 4.16664 4.38835 4.40262 4.57050 4.61812 4.65747 4.75183 4.77301 4.78066 4.95242 5.02518 5.15739 5.18386 5.23150 5.29725 5.80455 5.85733 6.01327 6.30941 6.38057 6.95548 6.97817 7.01222 7.59086 7.72056 8.15205 9.01675 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.003157 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.755712 B = 8866.337888 C =10565.419546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.149 3.851 3 H 0.116 0.884 4 N -0.724 5.724 5 C 0.705 3.295 6 N -0.846 5.846 7 O -0.638 6.638 8 C 0.517 3.483 9 O -0.568 6.568 10 N -0.707 5.707 11 C 0.136 3.864 12 C -0.140 4.140 13 H 0.118 0.882 14 C 0.156 3.844 15 N -0.612 5.612 16 C -0.354 4.354 17 H 0.066 0.934 18 C -0.072 4.072 19 N -0.944 5.944 20 Si 1.113 2.887 21 H -0.299 1.299 22 H -0.277 1.277 23 H -0.275 1.275 24 C 0.156 3.844 25 C -0.165 4.165 26 C 0.301 3.699 27 F -0.205 7.205 28 F -0.208 7.208 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.412 0.588 33 H 0.413 0.587 34 H 0.423 0.577 35 H 0.417 0.583 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.019 0.981 39 H 0.083 0.917 40 H 0.255 0.745 41 H 0.065 0.935 42 H 0.012 0.988 43 H 0.100 0.900 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.019 -2.077 -16.327 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.134 0.866 4 N -0.382 5.382 5 C 0.403 3.597 6 N -0.415 5.415 7 O -0.520 6.520 8 C 0.303 3.697 9 O -0.447 6.447 10 N -0.360 5.360 11 C 0.012 3.988 12 C -0.161 4.161 13 H 0.136 0.864 14 C 0.031 3.969 15 N -0.336 5.336 16 C -0.483 4.483 17 H 0.084 0.916 18 C -0.268 4.268 19 N -0.585 5.585 20 Si 0.938 3.062 21 H -0.226 1.226 22 H -0.203 1.203 23 H -0.201 1.201 24 C 0.030 3.970 25 C -0.204 4.204 26 C 0.264 3.736 27 F -0.186 7.186 28 F -0.189 7.189 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.250 0.750 33 H 0.244 0.756 34 H 0.256 0.744 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.030 0.970 43 H 0.119 0.881 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.292 -1.016 -15.216 17.858 hybrid contribution 0.964 -1.676 -0.978 2.167 sum 10.256 -2.692 -16.194 19.357 Atomic orbital electron populations 1.22142 0.91564 1.03487 1.04289 1.20546 0.96307 0.97394 0.81776 0.86637 1.44718 1.71168 1.14622 1.07671 1.16043 0.77912 0.84407 0.81348 1.42761 1.71855 1.15768 1.11118 1.90951 1.59391 1.16214 1.85424 1.20804 0.79536 0.84213 0.85162 1.90685 1.39331 1.27660 1.87021 1.45749 1.53313 1.32360 1.04530 1.21118 0.99272 0.95992 0.82454 1.22857 0.99207 1.02299 0.91776 0.86375 1.21068 0.89648 0.96512 0.89716 1.44384 1.44093 1.44212 1.00908 1.20250 1.11741 1.09128 1.07226 0.91581 1.27129 0.96782 1.06200 0.96723 1.70921 1.44623 1.00209 1.42764 0.82875 0.75640 0.71815 0.75913 1.22579 1.20347 1.20089 1.20777 0.89318 0.96626 0.90312 1.22992 0.99073 1.02362 0.96000 1.20988 0.75185 0.78466 0.98913 1.92980 1.31749 1.96312 1.97524 1.92960 1.90713 1.37709 1.97558 0.89451 0.91088 0.91544 0.75050 0.75590 0.74363 0.74572 0.90784 0.91602 0.96289 0.89905 0.93491 0.91705 0.97008 0.88116 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.38 71.98 0.68 -2.01 16 2 C 0.15 2.90 2.98 44.25 0.13 3.03 16 3 H 0.12 2.32 7.58 -2.39 -0.02 2.30 16 4 N -0.72 -13.22 4.96 -461.43 -2.29 -15.50 16 5 C 0.71 14.13 8.80 179.06 1.58 15.70 16 6 N -0.85 -9.09 8.88 -184.75 -1.64 -10.73 16 7 O -0.64 -18.28 16.84 -3.98 -0.07 -18.35 16 8 C 0.52 11.83 7.22 87.66 0.63 12.46 16 9 O -0.57 -16.36 15.84 -3.03 -0.05 -16.40 16 10 N -0.71 -15.25 5.23 -463.07 -2.42 -17.67 16 11 C 0.14 3.55 4.83 86.38 0.42 3.96 16 12 C -0.14 -4.04 2.04 -10.57 -0.02 -4.06 16 13 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 14 C 0.16 5.50 5.42 86.51 0.47 5.97 16 15 N -0.61 -27.06 2.84 -698.26 -1.99 -29.05 16 16 C -0.35 -17.57 9.49 84.03 0.80 -16.77 16 17 H 0.07 3.16 7.94 -2.91 -0.02 3.14 16 18 C -0.07 -3.75 4.69 84.86 0.40 -3.35 16 19 N -0.94 -54.17 12.41 21.65 0.27 -53.90 16 20 Si 1.11 47.08 29.98 68.60 2.06 49.13 16 21 H -0.30 -13.29 7.11 99.48 0.71 -12.59 16 22 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 24 C 0.16 6.71 4.48 86.36 0.39 7.10 16 25 C -0.16 -5.52 5.62 30.67 0.17 -5.35 16 26 C 0.30 9.59 1.63 30.62 0.05 9.64 16 27 F -0.20 -6.26 16.41 44.97 0.74 -5.52 16 28 F -0.21 -7.36 15.72 44.97 0.71 -6.65 16 29 H 0.09 1.30 7.56 -2.38 -0.02 1.28 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.41 6.61 7.80 -92.70 -0.72 5.89 16 33 H 0.41 2.03 8.84 -92.70 -0.82 1.21 16 34 H 0.42 3.55 8.93 -92.71 -0.83 2.73 16 35 H 0.42 7.45 7.14 -92.71 -0.66 6.79 16 36 H 0.07 1.99 7.63 -2.39 -0.02 1.97 16 37 H 0.07 1.90 7.97 -2.39 -0.02 1.88 16 38 H 0.02 0.73 7.92 -2.38 -0.02 0.71 16 39 H 0.08 2.64 7.16 -2.38 -0.02 2.63 16 40 H 0.26 14.97 6.69 -92.71 -0.62 14.35 16 41 H 0.06 3.17 6.31 -2.39 -0.02 3.15 16 42 H 0.01 0.55 7.64 -2.39 -0.02 0.53 16 43 H 0.10 3.19 8.14 -2.39 -0.02 3.18 16 44 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -70.34 364.84 -0.79 -71.13 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -1.80 Total: 27.19 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 5.69 Total: 26.33 kcal Atomic # 7 Polarization: -118.79 SS G_CDS: -8.06 Total: -126.85 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.12 Total: -34.75 kcal Atomic # 9 Polarization: -13.62 SS G_CDS: 1.44 Total: -12.17 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.06 Total: 49.13 kcal Total: -70.34 -0.79 -71.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733477690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.816 kcal (2) G-P(sol) polarization free energy of solvation -70.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 33.07 seconds