Wall clock time and date at job start Tue Mar 31 2020 21:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46835 * 299.99923 * 3 2 1 6 6 H 1.48496 * 109.46808 * 59.99812 * 3 2 1 7 7 C 1.38818 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99651 * 198.04087 * 7 2 1 9 9 N 1.36937 * 120.00027 * 18.03748 * 7 2 1 10 10 C 1.46925 * 120.63135 * 28.30137 * 9 7 2 11 11 C 1.53187 * 108.77859 * 126.36378 * 10 9 7 12 12 C 1.53049 * 109.30702 * 54.63501 * 11 10 9 13 13 F 1.39908 * 109.45563 * 178.61378 * 12 11 10 14 14 F 1.39896 * 109.46053 * 58.65701 * 12 11 10 15 15 C 1.53035 * 109.53762 * 298.63214 * 12 11 10 16 16 H 1.08998 * 109.52633 * 301.39733 * 15 12 11 17 17 C 1.53005 * 109.49482 * 181.31655 * 15 12 11 18 18 N 1.46502 * 109.46930 * 175.16017 * 17 15 12 19 19 C 1.34773 * 119.99805 * 179.97438 * 18 17 15 20 20 O 1.21280 * 120.00018 * 354.86974 * 19 18 17 21 21 C 1.50697 * 120.00049 * 174.86995 * 19 18 17 22 22 C 1.53004 * 115.55234 * 294.61174 * 21 19 18 23 23 C 1.53000 * 109.46754 * 295.86552 * 22 21 19 24 24 F 1.39899 * 109.47038 * 176.58461 * 23 22 21 25 25 C 1.53007 * 117.50093 * 80.27778 * 21 19 18 26 26 C 1.53002 * 117.50301 * 148.93833 * 21 19 18 27 27 C 1.46923 * 120.63170 * 208.27254 * 9 7 2 28 28 H 0.96998 * 119.99975 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58620 * 246.15635 * 10 9 7 30 30 H 1.09003 * 109.58466 * 6.57797 * 10 9 7 31 31 H 1.09001 * 109.49913 * 174.58203 * 11 10 9 32 32 H 1.08997 * 109.50173 * 294.68737 * 11 10 9 33 33 H 1.09000 * 109.46951 * 55.16571 * 17 15 12 34 34 H 1.08998 * 109.47587 * 295.16731 * 17 15 12 35 35 H 0.96994 * 119.99985 * 0.02562 * 18 17 15 36 36 H 1.08995 * 109.47136 * 175.86246 * 22 21 19 37 37 H 1.09001 * 109.46862 * 55.85897 * 22 21 19 38 38 H 1.08996 * 109.47684 * 56.57902 * 23 22 21 39 39 H 1.09007 * 109.47169 * 296.58154 * 23 22 21 40 40 H 1.09001 * 117.50166 * 215.00541 * 25 21 19 41 41 H 1.08997 * 117.49438 * 0.02860 * 25 21 19 42 42 H 1.09001 * 117.49569 * 359.97438 * 26 21 19 43 43 H 1.08995 * 117.50298 * 144.97009 * 26 21 19 44 44 H 1.09005 * 109.58602 * 113.84452 * 27 9 7 45 45 H 1.09010 * 109.58524 * 353.42466 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0505 -1.2253 0.2891 9 7 1.3760 -2.3588 -0.3683 10 6 0.2497 -2.3277 -1.3112 11 6 0.5427 -3.2962 -2.4614 12 6 0.8460 -4.6833 -1.8901 13 9 1.0831 -5.5778 -2.9394 14 9 -0.2469 -5.1267 -1.1378 15 6 2.0847 -4.6082 -0.9945 16 1 2.9313 -4.2395 -1.5737 17 6 2.4064 -6.0015 -0.4501 18 7 3.6564 -5.9512 0.3123 19 6 4.1393 -7.0694 0.8891 20 8 3.4940 -8.0957 0.8566 21 6 5.4812 -7.0445 1.5744 22 6 6.6836 -6.7935 0.6622 23 6 6.8212 -7.9500 -0.3300 24 9 7.8723 -7.6836 -1.2139 25 6 5.5396 -6.4741 2.9930 26 6 5.6829 -7.9813 2.7672 27 6 1.8092 -3.6545 0.1722 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6633 -2.6328 -0.8001 30 1 0.1306 -1.3183 -1.7049 31 1 -0.3257 -3.3550 -3.1176 32 1 1.4034 -2.9396 -3.0271 33 1 2.5150 -6.6996 -1.2801 34 1 1.5972 -6.3333 0.2003 35 1 4.1361 -5.1130 0.4025 36 1 7.5887 -6.7225 1.2653 37 1 6.5370 -5.8617 0.1159 38 1 5.8933 -8.0596 -0.8913 39 1 7.0282 -8.8722 0.2132 40 1 6.4345 -5.9201 3.2763 41 1 4.6073 -6.1173 3.4306 42 1 4.8448 -8.6154 3.0564 43 1 6.6719 -8.4192 2.9017 44 1 1.0233 -4.0679 0.8044 45 1 2.7191 -3.5206 0.7574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733479346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:20 Heat of formation + Delta-G solvation = -155.662138 kcal Electronic energy + Delta-G solvation = -30292.320404 eV Core-core repulsion = 25702.685824 eV Total energy + Delta-G solvation = -4589.634580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.56728 -47.81399 -46.51816 -40.34151 -37.72617 -36.92268 -35.04126 -32.73390 -31.55907 -30.88007 -30.25156 -26.30637 -25.25101 -24.29054 -23.14802 -22.63751 -22.24092 -21.35699 -19.88783 -19.40935 -17.50411 -16.98719 -16.84594 -16.53421 -16.40247 -16.06146 -15.56435 -15.37253 -15.35352 -15.20111 -14.86309 -14.56281 -14.28157 -13.77746 -13.61176 -13.31544 -13.16321 -13.05540 -12.85668 -12.82169 -12.58748 -12.26628 -11.88572 -11.81754 -11.73005 -11.63864 -11.59198 -11.29505 -11.09587 -10.87960 -10.79851 -10.68066 -10.54768 -10.35957 -10.11875 -9.97255 -9.91060 -9.66219 -9.09019 -8.65404 -6.94088 -5.98120 -3.42669 2.44725 2.94390 3.26627 3.34673 3.35441 3.36830 4.07050 4.15429 4.33078 4.38359 4.43786 4.49906 4.59668 4.64805 4.67228 4.82006 4.85371 4.89390 5.12529 5.15829 5.23222 5.34251 5.36694 5.45275 5.47019 5.54907 5.60055 5.64778 5.73337 5.83333 5.86023 5.95193 6.11025 6.22510 6.27480 6.34551 6.38538 6.64238 7.05019 7.39137 7.42913 7.62095 8.12515 8.22401 8.98429 9.61144 10.16699 11.11109 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003594 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.007684 B = 7789.437971 C = 8937.401814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.008 3.992 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.263 4.263 8 H 0.069 0.931 9 N -0.590 5.590 10 C 0.171 3.829 11 C -0.179 4.179 12 C 0.300 3.700 13 F -0.213 7.213 14 F -0.199 7.199 15 C -0.155 4.155 16 H 0.102 0.898 17 C 0.124 3.876 18 N -0.716 5.716 19 C 0.548 3.452 20 O -0.537 6.537 21 C -0.163 4.163 22 C -0.107 4.107 23 C 0.062 3.938 24 F -0.218 7.218 25 C -0.152 4.152 26 C -0.144 4.144 27 C 0.153 3.847 28 H 0.256 0.744 29 H 0.033 0.967 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.405 0.595 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.032 0.968 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.662 -12.008 1.193 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.191 4.191 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.392 4.392 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.219 4.219 12 C 0.264 3.736 13 F -0.194 7.194 14 F -0.180 7.180 15 C -0.177 4.177 16 H 0.120 0.880 17 C 0.000 4.000 18 N -0.367 5.367 19 C 0.333 3.667 20 O -0.413 6.413 21 C -0.167 4.167 22 C -0.145 4.145 23 C 0.007 3.993 24 F -0.199 7.199 25 C -0.189 4.189 26 C -0.181 4.181 27 C 0.026 3.974 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.241 0.759 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.050 0.950 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.071 -12.604 1.133 16.173 hybrid contribution 0.469 1.177 -0.159 1.277 sum 10.541 -11.427 0.974 15.576 Atomic orbital electron populations 1.70042 1.05363 1.25866 1.52741 1.25087 0.95266 0.98652 1.00132 0.86220 0.79395 0.83668 0.77430 1.20125 1.21390 1.21573 1.19174 0.93024 0.84588 1.42437 0.91289 1.44091 1.37306 1.01337 1.48421 1.20817 0.89629 0.98155 0.86928 1.23272 1.03482 0.92858 1.02263 1.21026 0.84448 0.87656 0.80505 1.92960 1.94830 1.71773 1.59884 1.92967 1.57014 1.90929 1.77089 1.22971 0.97377 0.96823 1.00492 0.87975 1.21355 0.86303 0.96503 0.95819 1.45905 1.25565 1.11659 1.53607 1.19429 0.85751 0.83352 0.78152 1.90713 1.59613 1.31864 1.59153 1.21331 0.93974 1.10249 0.91118 1.21631 0.96300 0.99457 0.97112 1.21948 0.88193 0.98954 0.90185 1.92770 1.60457 1.95581 1.71136 1.23143 1.04501 0.96857 0.94375 1.23047 1.03964 0.93192 0.97910 1.20907 0.98898 0.86337 0.91245 0.93350 0.94917 0.88318 0.90506 0.89541 0.91054 0.90551 0.75933 0.89530 0.89641 0.90765 0.90391 0.87491 0.87802 0.87568 0.87800 0.94970 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 11.28 55.49 0.63 -23.84 16 2 C 0.01 0.21 4.88 -17.43 -0.09 0.13 16 3 Si 0.90 20.23 29.59 -169.99 -5.03 15.20 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.56 9.57 -15.06 -0.14 -6.71 16 8 H 0.07 1.66 7.89 -52.48 -0.41 1.25 16 9 N -0.59 -13.39 2.99 -172.32 -0.52 -13.90 16 10 C 0.17 3.77 5.11 -3.71 -0.02 3.75 16 11 C -0.18 -3.21 5.62 -26.61 -0.15 -3.36 16 12 C 0.30 5.21 1.63 -26.69 -0.04 5.17 16 13 F -0.21 -3.63 16.41 2.25 0.04 -3.59 16 14 F -0.20 -3.76 15.72 2.25 0.04 -3.73 16 15 C -0.16 -2.46 2.03 -90.50 -0.18 -2.64 16 16 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 17 C 0.12 1.82 4.84 -4.04 -0.02 1.80 16 18 N -0.72 -8.93 5.33 -60.29 -0.32 -9.25 16 19 C 0.55 7.06 6.36 -10.99 -0.07 6.99 16 20 O -0.54 -8.86 16.70 5.56 0.09 -8.77 16 21 C -0.16 -1.53 1.91 -155.66 -0.30 -1.83 16 22 C -0.11 -0.87 5.55 -26.73 -0.15 -1.02 16 23 C 0.06 0.58 7.46 37.16 0.28 0.85 16 24 F -0.22 -2.48 17.36 2.25 0.04 -2.44 16 25 C -0.15 -1.20 9.93 -26.69 -0.27 -1.47 16 26 C -0.14 -1.18 9.78 -26.69 -0.26 -1.44 16 27 C 0.15 2.86 5.40 -3.72 -0.02 2.84 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 30 H 0.10 2.42 6.11 -51.93 -0.32 2.10 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.07 1.07 7.63 -51.93 -0.40 0.68 16 34 H 0.08 1.23 7.97 -51.93 -0.41 0.82 16 35 H 0.41 4.40 7.70 -40.82 -0.31 4.09 16 36 H 0.09 0.58 8.10 -51.93 -0.42 0.15 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.77 7.57 -51.93 -0.39 0.37 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.11 1.01 7.99 -51.93 -0.42 0.60 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 45 H 0.07 1.13 7.13 -51.92 -0.37 0.76 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -29.60 374.15 -7.62 -37.22 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.79 Total: 4.40 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.43 Total: 3.05 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.21 Total: -46.99 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 9 Polarization: -9.87 SS G_CDS: 0.11 Total: -9.76 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.60 -7.62 -37.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733479346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.438 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds